Gcaud2454.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2454.t1
Unique NameGcaud2454.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length182
Homology
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A2V3J1F6_9FLOR (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F6_9FLOR)

HSP 1 Score: 322 bits (826), Expect = 2.250e-110
Identity = 148/181 (81.77%), Postives = 165/181 (91.16%), Query Frame = 0
Query:    1 MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            M+E SAAIPFLPKP NIP+D  GYAGFDPLGF+NVMNFKFLQEAEIKH RICMLAV+GIL+ E Y FPWYS+APKLAAGIH WGV QG +NQ+LIW+SFWEI+VGTPA++QM+TLDSPRQPG YAFDPLGLGKT AAFK+FQ +E+ NGRLAMIA+GGLLHQEFLTGMTPVQQLL GKFLP
Sbjct:   38 MAETSAAIPFLPKPQNIPEDAAGYAGFDPLGFTNVMNFKFLQEAEIKHARICMLAVLGILIPEQYVFPWYSEAPKLAAGIHQWGVNQGSLNQILIWSSFWEIVVGTPALIQMLTLDSPRQPGYYAFDPLGLGKTQAAFKRFQTSEIKNGRLAMIAIGGLLHQEFLTGMTPVQQLLEGKFLP 218          
BLAST of Gcaud2454.t1 vs. uniprot
Match: J9V789_NEOYE (Light-harvesting protein n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=J9V789_NEOYE)

HSP 1 Score: 216 bits (551), Expect = 1.450e-68
Identity = 107/178 (60.11%), Postives = 131/178 (73.60%), Query Frame = 0
Query:    4 KSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            KS AIPF+  P  +   + G  GFDPLGFSN ++ KFL+EAEIKH R+ MLAV+G+ V EFYT P+YS  P LA   H + V QG M QLL+W    EIIVG PAV+QM+   S R+PGE+ FDPL L KT+AAF KFQNAELVNGRL MIA+GGL+HQ+++T  TPVQQ+L+GK  P
Sbjct:   40 KSKAIPFMEAPPALDGSMIGDVGFDPLGFSNYIDLKFLREAEIKHCRVTMLAVLGLFVQEFYTLPFYSGGPALAEPSHNYFVTQGAMQQLLLWICGLEIIVGVPAVLQMMQ-GSGRRPGEFGFDPLNLAKTNAAFDKFQNAELVNGRLTMIAIGGLIHQQWMTHCTPVQQILSGKLFP 216          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A1X6P5L2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5L2_PORUM)

HSP 1 Score: 211 bits (537), Expect = 1.810e-66
Identity = 105/178 (58.99%), Postives = 131/178 (73.60%), Query Frame = 0
Query:    4 KSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            KS AIPF+  P  +   + G  GFDP GF+N ++ KFL+EAEIKH RI MLAV+G+ V EFYT P+YS  P LA   H + V  G M QLL+WTS  EII G PA++QM+   SPR+PGE+ FDPLGL K +AAF ++QNAEL+NGRLAMIAVGGL+HQE++T +TP+ QL AGK  P
Sbjct:   39 KSKAIPFMEAPPALDGSMIGDVGFDPFGFTNYIDLKFLREAEIKHCRITMLAVLGLFVQEFYTLPFYSG-PALAEPSHNFYVAHGAMKQLLLWTSGLEIITGVPALLQMMQ-GSPRRPGEFGFDPLGLAKNNAAFARWQNAELINGRLAMIAVGGLIHQEWMTKLTPIHQLTAGKIFP 214          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A5J4YN76_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 202 bits (513), Expect = 9.030e-63
Identity = 94/181 (51.93%), Postives = 130/181 (71.82%), Query Frame = 0
Query:    1 MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            M  KS ++PF+  PA +   + G  GFDPLGFSN ++ KFL+EAE+KH RICMLA +GI+V E Y FP+YS AP+LA   H + VK G +NQ+L++ SF E++ GTP ++Q +  ++ R PG +AFDPLGLGK  A F+++Q +EL NGRLAMIAVGG +HQ ++  +  ++QL  GK LP
Sbjct:   38 MMAKSKSVPFMEAPAALDGSMVGDVGFDPLGFSNYIDLKFLREAELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGYFAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP 218          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A2V3J3X6_9FLOR (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3X6_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 1.900e-61
Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = 0
Query:    1 MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            M+EKS ++PF+  P+ +  D+ GY GFDP   S  +N K+LQEAEIKH RIC+LA++G +VAE Y FPWYSD P +    H W V  G ++Q+L+W SF+EI+   PAV QMVT  S R+PG++ FDPLGLGK  A    ++  E+ NGRLAMIAV G +H   +T    ++QL AG  LP
Sbjct:    1 MAEKSPSVPFMDAPSRLTPDMAGYVGFDPFNISAFLNVKWLQEAEIKHARICLLAILGFMVAEVYQFPWYSDYPHVVIYRHNWAVTNGSLSQILLWCSFFEIMT-MPAVTQMVTGRSDREPGDFKFDPLGLGKDPAKLAVYKVNEIKNGRLAMIAVSGAIHHAAVTNQNLIEQLTAGNILP 180          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A5J4YYC4_PORPP (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYC4_PORPP)

HSP 1 Score: 190 bits (483), Expect = 2.820e-58
Identity = 95/182 (52.20%), Postives = 128/182 (70.33%), Query Frame = 0
Query:    1 MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVK-QGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            M  KS ++PF+  P  +   + G  GFDPL  S  +N K+L+E+E+KHGRICMLA +G++V E Y FP+Y  AP +A   H +  K  G + Q+LI+ SF+EI+  TPAV+QM+T +S R PG +AFDPLGLGK   A K+F+ +EL NGRLAMIAVGG++HQ +LT M  + QL AGKF+P
Sbjct:   34 MMAKSKSVPFMDAPPALDGSLAGDVGFDPLNISGFLNIKWLRESELKHGRICMLAALGMIVQEVYRFPFYQGAPAVATEAHDYFAKWNGPLGQVLIFASFFEIMT-TPAVIQMITGESDRAPGYFAFDPLGLGKNPDARKRFEVSELKNGRLAMIAVGGMVHQMWLTKMGIIGQLQAGKFMP 214          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A7S0ZC59_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZC59_9RHOD)

HSP 1 Score: 186 bits (473), Expect = 2.240e-57
Identity = 90/170 (52.94%), Postives = 122/170 (71.76%), Query Frame = 0
Query:   13 KPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVK-QGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            KP+ +   + G  GFDPLG S+ +N K+L+EAE+KHGRICMLA +G LV E YTFP+Y  AP +    H +  K  G + Q+L++TSF+EI+  TPA++QMVT +S R PG++ FDPL L K +   KKFQ  E+ NGRLAMIA+GGL+HQ +LT M  ++QL +GKF+P
Sbjct:    1 KPSALDGSMAGDVGFDPLGISDFLNIKWLREAELKHGRICMLAALGWLVQEIYTFPFYPGAPHVPTAAHDYFAKWNGPLGQILLFTSFFEIMT-TPAIIQMVTGESDRMPGDFKFDPLKLAKNEETMKKFQLNEVKNGRLAMIAIGGLVHQAWLTNMGAIEQLQSGKFIP 169          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A7S2ZRW4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRW4_9RHOD)

HSP 1 Score: 176 bits (445), Expect = 1.710e-52
Identity = 92/183 (50.27%), Postives = 123/183 (67.21%), Query Frame = 0
Query:    1 MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGL-GKTDAA-FKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            M  KS ++PF+  P  +   + G  GFDPL FS  +   +L+EAEIKH R+CMLA +G L  EFYTFP+Y++APKL    H +  +   + Q+L++   WEI+  TPAV+QMVT  S R+PG + FDPL L  K D A F+K+Q +EL NGRLAMIA+GGL+HQ +LT M  + Q+ AGKF P
Sbjct:   36 MQAKSKSVPFMDCPKALDGSMVGDVGFDPLNFSAYLPLSWLREAEIKHCRLCMLAALGWLTTEFYTFPFYANAPKLPTDAHDYFTRTA-LAQVLLFVCVWEILT-TPAVIQMVTGKSDRKPGYFGFDPLNLTSKWDPAKFEKYQLSELKNGRLAMIAIGGLVHQAWLTKMPAIAQIQAGKFFP 216          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A1X6P6J5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6J5_PORUM)

HSP 1 Score: 170 bits (430), Expect = 2.990e-50
Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 0
Query:    5 SAAIPFLPKPANIPDD--IPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP 181
            S ++PF+  P  + ++  +PG   FDPL  S  +  K+LQEAEIKHGR+CMLA +G+LV EF+TFP+Y +AP LA   H +GVK G M  +L+    WE +  TPAVVQM+     R+PG + FDPL LGK  A    F   E+ NGRLAMI +GG++HQ+++T    V+QLL G FLP
Sbjct:   40 SKSVPFMEVPPVLAENPSMPGNVEFDPLNISAYLPIKWLQEAEIKHGRVCMLACLGLLVQEFFTFPFYKNAPHLATSGHDYGVKVGGMVHILMAVVIWEALT-TPAVVQMIN-GGDRKPGYFGFDPLNLGKNPA----FAVNEVKNGRLAMIGIGGMIHQQWMTNQGSVEQLLKGNFLP 212          
BLAST of Gcaud2454.t1 vs. uniprot
Match: A0A7S3A203_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A203_9RHOD)

HSP 1 Score: 166 bits (420), Expect = 7.890e-49
Identity = 83/176 (47.16%), Postives = 112/176 (63.64%), Query Frame = 0
Query:    4 KSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGRICMLAVIGILVAEFYTFPW-YSDAPKLAAGIHAWGVKQGCMNQLLIWTSFWEIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGRLAMIAVGGLLHQEFLTGMTPVQQLLAGK 178
            +S A+PF+  P  +   +PG  GFDPLG +N  + K++QEAEIKHGRICMLA +G LV E +T PW Y     LA   H + VK G + Q+ ++ S WE I+G  A+    T++  R PG++ FDPLGLGK  A  KK Q  EL+NGRLAM A+GG +HQ+++     + QLL  K
Sbjct:   31 QSKAMPFMEAPPALDGTLPGDNGFDPLGLTNYFDIKWMQEAEIKHGRICMLATLGFLVPELFTLPWAYFPKGILAVDAHDYFVKTGGLAQVNLFISGWEAIIGVAAL--QATMEGKRAPGDFGFDPLGLGKDPAKMKKNQTVELINGRLAMCAIGGFIHQQWIYKQGILDQLLHFK 204          
The following BLAST results are available for this feature:
BLAST of Gcaud2454.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1F6_9FLOR2.250e-11081.77Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
J9V789_NEOYE1.450e-6860.11Light-harvesting protein n=1 Tax=Neopyropia yezoen... [more]
A0A1X6P5L2_PORUM1.810e-6658.99Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YN76_PORPP9.030e-6351.93Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A2V3J3X6_9FLOR1.900e-6150.83Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A5J4YYC4_PORPP2.820e-5852.20Chlorophyll a-b binding protein, chloroplastic n=1... [more]
A0A7S0ZC59_9RHOD2.240e-5752.94Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2ZRW4_9RHOD1.710e-5250.27Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P6J5_PORUM2.990e-5049.16Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S3A203_9RHOD7.890e-4947.16Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 3..179
e-value: 4.2E-43
score: 149.5
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 7..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 111..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..50
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 2..177
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 14..163
e-value: 6.9E-35
score: 121.0
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 7..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_742_length_18867_cov_4.749521contigNODE_742_length_18867_cov_4.749521:2884..3512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2454.t1Gcaud2454.t1Gracilaria caudata M_176_S67 malemRNANODE_742_length_18867_cov_4.749521 2884..3512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=182bp
MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGR
ICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFW
EIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGR
LAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln