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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 55529.EKX37817 |
| Preferred name | LHCQ |
| PFAMs | Chloroa_b-bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08907,ko:K08914,ko:K14172 |
| KEGG Pathway | ko00196,ko01100,map00196,map01100 |
| GOs | GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363 |
| Evalue | 2.79e-49 |
| EggNOG OGs | 2CMFR@1|root,2QQ8A@2759|Eukaryota |
| Description | The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated |
| COG category | U |
| BRITE | ko00000,ko00001,ko00194 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2454.t1.stop1 | Gcaud2454.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_742_length_18867_cov_4.749521 2884..2886 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2454.t1.intron1 | Gcaud2454.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_742_length_18867_cov_4.749521 3285..3367 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2454.t1.start1 | Gcaud2454.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_742_length_18867_cov_4.749521 3510..3512 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=182bp
MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGR
ICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFW
EIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGR
LAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP* back to topspliced messenger RNA >Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2884..3512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTGAGAAGTCTGCGGCCATTCCGTTTCTCCCCAAGCCGGCCAATAT
CCCGGATGACATCCCTGGGTATGCCGGCTTCGACCCCTTGGGCTTCTCTA
ACGTCATGAACTTCAAGTTTTTGCAAGAGGCTGAAATCAAGCACGGTCGC
ATTTGCATGCTCGCTGTTATTGGCATCTTGGTCGCCGAGTTCTACACTTT
TCCCTGGTACTCTGATGCACCGAAGCTTGCGGCTGGTATTCACGCATGGG
GTGTGAAGCAGGGTTGCATGAACCAACTGCTCATCTGGACTTCCTTCTGG
GAGATCATTGTAGGAACTCCCGCTGTGGTGCAGATGGTCACCCTCGATTC
GCCCCGTCAACCAGGAGAATATGCGTTCGATCCTCTTGGTCTCGGAAAGA
CTGACGCTGCGTTCAAGAAATTCCAAAACGCTGAGCTCGTCAACGGACGT
CTTGCTATGATTGCTGTTGGTGGCCTTTTGCATCAAGAGTTTCTCACTGG
TATGACGCCTGTCCAGCAACTGTTGGCTGGAAAGTTTTTGCCGTAA back to topprotein sequence of Gcaud2454.t1 >Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=182bp
MSEKSAAIPFLPKPANIPDDIPGYAGFDPLGFSNVMNFKFLQEAEIKHGR
ICMLAVIGILVAEFYTFPWYSDAPKLAAGIHAWGVKQGCMNQLLIWTSFW
EIIVGTPAVVQMVTLDSPRQPGEYAFDPLGLGKTDAAFKKFQNAELVNGR
LAMIAVGGLLHQEFLTGMTPVQQLLAGKFLP* back to topmRNA from alignment at NODE_742_length_18867_cov_4.749521:2884..3512- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=629bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2884..3512- (Gracilaria caudata M_176_S67 male)
ATGAGTGAGAAGTCTGCGGCCATTCCGTTTCTCCCCAAGCCGGCCAATAT
CCCGGATGACATCCCTGGGTATGCCGGCTTCGACCCCTTGGGCTTCTCTA
ACGTCATGAACTTCAAGTTTTTGCAAGAGGCTGAAATCAAGCACGGTAAG
TTTCCACACGCACCAAAAGTCGAGCGGCATCAGTTGGTTTGCTAACGTCT
TTTTCACGACACGTGCTGAAACGTACAGGTCGCATTTGCATGCTCGCTGT
TATTGGCATCTTGGTCGCCGAGTTCTACACTTTTCCCTGGTACTCTGATG
CACCGAAGCTTGCGGCTGGTATTCACGCATGGGGTGTGAAGCAGGGTTGC
ATGAACCAACTGCTCATCTGGACTTCCTTCTGGGAGATCATTGTAGGAAC
TCCCGCTGTGGTGCAGATGGTCACCCTCGATTCGCCCCGTCAACCAGGAG
AATATGCGTTCGATCCTCTTGGTCTCGGAAAGACTGACGCTGCGTTCAAG
AAATTCCAAAACGCTGAGCTCGTCAACGGACGTCTTGCTATGATTGCTGT
TGGTGGCCTTTTGCATCAAGAGTTTCTCACTGGTATGACGCCTGTCCAGC
AACTGTTGGCTGGAAAGTTTTTGCCGTAA back to topCoding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:2884..3512- >Gcaud2454.t1 ID=Gcaud2454.t1|Name=Gcaud2454.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=546bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2884..3512- (Gracilaria caudata M_176_S67 male)
ATGAGTGAGAAGTCTGCGGCCATTCCGTTTCTCCCCAAGCCGGCCAATAT
CCCGGATGACATCCCTGGGTATGCCGGCTTCGACCCCTTGGGCTTCTCTA
ACGTCATGAACTTCAAGTTTTTGCAAGAGGCTGAAATCAAGCACGGTCGC
ATTTGCATGCTCGCTGTTATTGGCATCTTGGTCGCCGAGTTCTACACTTT
TCCCTGGTACTCTGATGCACCGAAGCTTGCGGCTGGTATTCACGCATGGG
GTGTGAAGCAGGGTTGCATGAACCAACTGCTCATCTGGACTTCCTTCTGG
GAGATCATTGTAGGAACTCCCGCTGTGGTGCAGATGGTCACCCTCGATTC
GCCCCGTCAACCAGGAGAATATGCGTTCGATCCTCTTGGTCTCGGAAAGA
CTGACGCTGCGTTCAAGAAATTCCAAAACGCTGAGCTCGTCAACGGACGT
CTTGCTATGATTGCTGTTGGTGGCCTTTTGCATCAAGAGTTTCTCACTGG
TATGACGCCTGTCCAGCAACTGTTGGCTGGAAAGTTTTTGCCGTAA back to top
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