Gcaud2452.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2452.t1
Unique NameGcaud2452.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length452
Homology
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7QEY9_CHOCR (Sel1-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEY9_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 7.450e-17
Identity = 62/216 (28.70%), Postives = 111/216 (51.39%), Query Frame = 0
Query:   33 GSEEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITK--RKIRVWREWGPFRYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGM 246
            G+E  F+WEWWR+A +GR+EG+K WQE   +  VE     +   +G+R+    + +   +   W  W PFR + C+LE+E+++LL E  + + +      +N+  T      + R + V Y  A    +++GC+++RE+L  G    E     + + E+      + ++L+   ++      + +LK+AA+E  +  AL   V +L  R GG  GM
Sbjct:   33 GAEGVFEWEWWRDAAMGRMEGLKRWQENHEMEAVEFRTSRLPIDSGLRIVDSAVRESGHEFVTWAGWEPFRTKHCKLEVESEKLLVEF-AVTRQPESLVAKNKKITYSVNRMVGRRRSVGYAEAKRESIRDGCLIVREALIEGTRVVESGTALSNQTEDTKDVIRKAENLIGGGHE-NFGRAIFLLKVAALERNDIGALCTCVELL--RKGGPTGM 244          
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7QEZ2_CHOCR (Sel1-repeat containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QEZ2_CHOCR)

HSP 1 Score: 93.6 bits (231), Expect = 1.580e-16
Identity = 66/222 (29.73%), Postives = 113/222 (50.90%), Query Frame = 0
Query:   33 GSEEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITK--RKIRVWREWGPFRYRICRLELENKELLWE--LKSESGRLAGYTDRNEVTTQLAYLPIQRM----KKVCYNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGM 246
            G+E  F+WEWWR+A +GR+EG+K WQE   +  VE     +   +G+R+    + +   +   W  W PFR + C+LE+E+++LL E  +  + G LA       V  +  Y  + RM    + V Y  A    +++GC+++RE+L  G    E     + + E+      + ++L+   ++      + +LK+AA+E  +  AL   V +L  R GG  GM
Sbjct:  296 GAEGVFEWEWWRDAAMGRMEGLKRWQENHEMEAVEFRTSRLPIDSGLRIVDSAVRESGHEFVTWAGWEPFRTKHCKLEVESEKLLVEFAVTRQPGSLA-------VRNKKIYYSVDRMVGRRRSVGYAEAKRESIRDGCLIVREALIEGTRVVESGTALSNQTEDTKDVIRKAENLIGGGHE-NFGRAIFLLKVAALERNDIGALCTCVELL--RKGGPTGM 507          
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7QM04_CHOCR (Sel1-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM04_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 5.170e-14
Identity = 71/253 (28.06%), Postives = 122/253 (48.22%), Query Frame = 0
Query:    8 MCGVQEMGVVVEIYD-------------GRECRLKLVWGS---EEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKR--KIRVWREWGPFRYRICRLELENKELL--WELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESLK----GGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGML 236
            +CG Q M + V++ D             G + R++L  G+   +E F+W WWREA LGR+EG++ WQ+  G+   ++  G     +G+        K   ++ +W  W PFR + CR ELE  ++L  +E+    G L     +  +TT       +R   V  ++  E  L++GC+++ E+L     G L      A E  E  +   +  E    V+     +   ++ +LK+AA+E+G+  AL+R V +L
Sbjct:  661 ICGPQRMRLQVQVGDDDDWSNRSGAGDRGCKVRVRLCRGATSRDERFEWGWWREAALGRMEGLRRWQKNHGMCSPDLHAGHRNMTSGIVCVKPRAHKTGTEVEMWSGWEPFRSQQCRFELEGDKVLAKFEVSMRHGDLV--VTKKNITTSHTQAVGERSFTVYEDNDREA-LQDGCLIVGEALDDKSPGCLSSVRAGAYEDEEFAKNLPAKGEN---VIGEELGQVRRDIFLLKVAALEHGDMNALQRCVKLL 907          
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7Q4G3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4G3_CHOCR)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-13
Identity = 70/253 (27.67%), Postives = 120/253 (47.43%), Query Frame = 0
Query:    8 MCGVQEMGVVVEIYD-------------GRECRLKLVWGS---EEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKR--KIRVWREWGPFRYRICRLELENKELL--WELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESL----KGGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGML 236
            +CG Q M + V++ D             G + R++L  G+   +E F+W WWREA LGR+EG++ WQ+  G+   ++  G     +G+        K   ++ +W  W PFR + CR ELE  ++L  +E+    G L   T +N  T+    +  +R     Y       L++GC+++ E+L     G L        E  E  +   +  E    V+     +   ++ +LK+AA+E+G+  AL+R V +L
Sbjct:  661 ICGPQRMRLQVQVGDDDDWSNRSGAGDRGCKVRVRLCRGAASRDERFEWGWWREAALGRMEGLRRWQKNHGMCSPDLHAGHRNMTSGIVCVKPRAHKTGTEVEMWSGWEPFRSQQCRFELEGDKVLAKFEVSMRHGDLV-VTKKNIATSHTQAVGERRF--TMYEDNDREALQDGCLIVGEALVDKSPGCLSSVRAGVYEDEEFAKNLPAKGEN---VIGEELGQVRRDIFLLKVAALEHGDMNALQRCVKLL 907          
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7QNV9_CHOCR (Sel1-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNV9_CHOCR)

HSP 1 Score: 83.6 bits (205), Expect = 2.230e-13
Identity = 67/251 (26.69%), Postives = 118/251 (47.01%), Query Frame = 0
Query:    8 MCGVQEMGVVVEIYD-------------GRECRLKLVWGS---EEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKR--KIRVWREWGPFRYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESLK----GGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGML 236
            +CG Q M + V++ D             G + R++L  G+   +E F+W WWREA LGR+EG++ WQ+  G+   ++  G     + +        K   ++ +W  W PFR + CR ELE  ++L + +           +  +TT       +R   V  ++  E  L++GC+++ E+L     G L      A E  E  +   +  E    V+     +   ++ +LK+AA+E+G+  AL+R V +L
Sbjct:  248 ICGPQRMRLQVQVGDDDDWSNRGGAGDRGFKVRVRLCRGATSRDERFEWGWWREAALGRMEGLRRWQKNHGMCSPDLHAGHRNMTSDIVSVKPRADKTGTEVEMWSGWEPFRSQQCRFELEGDKVLAKFEVSMRHHDLVVTKKNITTLYTQAVGERSFTVYEDNDREA-LQDGCLIVGEALDDKSPGCLSSVRAGAYEDEEFAKNLPAKGEN---VIEEELGQVQRDIFLLKVAALEHGDMNALQRCVELL 494          
BLAST of Gcaud2452.t1 vs. uniprot
Match: R7QAV8_CHOCR (Sel1-repeat containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QAV8_CHOCR)

HSP 1 Score: 83.6 bits (205), Expect = 2.290e-13
Identity = 72/256 (28.12%), Postives = 127/256 (49.61%), Query Frame = 0
Query:    8 MCGVQEMGVVVEIYD-------------GRECRLKLVWGS---EEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKR--KIRVWREWGPFRYRICRLELENKELL--WELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESL----KGGLECKEEDANETGENEEKTSSGN---EGKHLVLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGML 236
            +CG Q M + V++ D             G + R++L  G+   +E F+W WWREA LGR+EG++ WQ+  G+   ++  G     +G+        K   ++ +W  W PFR + CR ELE  ++L  +E+    G L     +  +TT       +R   V  ++  E  L++GC+++RE+L     G L      +   G  E++  + N   +G++ V+     +    + +LK+AA+E+G+  AL+R V +L
Sbjct:  142 ICGPQRMRLQVQVSDDDDWSNRGGAGDRGCKVRVRLCRGATSRDERFEWGWWREAALGRMEGLRRWQKNHGMCSPDLHAGHRNMTSGIVSVKPRAHKTGTEVEMWSGWEPFRSQQCRFELEGDKVLAKFEVSMRHGDLV--VRKKNITTSHTQAVGERSFTVYEDNDREA-LQDGCLIVREALVDKSPGCLS-----SVRAGVYEDEGFAKNLPAKGEN-VIGEELGQVQRAIFLLKVAALEHGDMNALQRCVKLL 388          
BLAST of Gcaud2452.t1 vs. uniprot
Match: A0A2V3J4K5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4K5_9FLOR)

HSP 1 Score: 72.8 bits (177), Expect = 7.060e-10
Identity = 64/280 (22.86%), Postives = 118/280 (42.14%), Query Frame = 0
Query:    3 LEIKVMCGVQEMGVVVEIYDGRECRLKLVW-------GSEEEFKWEWWREAFLGRLEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETI--TKRKIRVWREWGPFRYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVCYNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHLVLLSNKFEE-DEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGMIDTVRLVGAYVGSMLCSR-REVVEIE 271
            + I+ +CG Q + + +     +  R  ++        GS+ +F+WE WR+AF GRL+   EWQ+  G   ++V          V  W   I  T ++   W  W PFR+  C  EL+    + +    +     ++ R +       +P   +K   Y HA    +   C V+R++L       EE+        +     +E     L S    E    +++L+MA++E    +AL+  + +L         +   V L+  Y+G +  ++ R+ VE +
Sbjct:  732 MHIRPICGPQNLFIRIWFEKEKSQRFTVLATIGRYEEGSDRDFRWECWRDAFSGRLQAAAEWQDAHGFLPLKVFRTDASIQERVVNWCTGIMGTGKQFHTWLGWPPFRFEFCLYELQTDGFILQYPRRAKLQLDFSSRLDHQASKTTVPGFELKPFSYEHAALEYIMYACSVVRDALSPQGYVDEEETELVYLERKAIRLMHEQSQGTLDSFGVREVHRAVILLEMASVELERMDALKSCLKLLTEHSLIAADIGRAVALLERYLGKLYLTKDRDSVEFQ 1011          
The following BLAST results are available for this feature:
BLAST of Gcaud2452.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
R7QEY9_CHOCR7.450e-1728.70Sel1-repeat containing protein n=1 Tax=Chondrus cr... [more]
R7QEZ2_CHOCR1.580e-1629.73Sel1-repeat containing protein n=2 Tax=Chondrus cr... [more]
R7QM04_CHOCR5.170e-1428.06Sel1-repeat containing protein n=1 Tax=Chondrus cr... [more]
R7Q4G3_CHOCR1.120e-1327.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QNV9_CHOCR2.230e-1326.69Sel1-repeat containing protein n=1 Tax=Chondrus cr... [more]
R7QAV8_CHOCR2.290e-1328.13Sel1-repeat containing protein n=2 Tax=Chondrus cr... [more]
A0A2V3J4K5_9FLOR7.060e-1022.86Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 377..397

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2446_length_5640_cov_4.383312contigNODE_2446_length_5640_cov_4.383312:317..1670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2452.t1Gcaud2452.t1Gracilaria caudata M_176_S67 malemRNANODE_2446_length_5640_cov_4.383312 317..1670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=452bp
MELEIKVMCGVQEMGVVVEIYDGRECRLKLVWGSEEEFKWEWWREAFLGR
LEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKRKIRVWREWGPF
RYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVC
YNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHL
VLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGMIDTV
RLVGAYVGSMLCSRREVVEIERGREKEVEEVIWGIVGEIINVLSGREEVF
DSMEILATCLATNADKYEEDVGSLSERLIFFNYGESDEALMGVERLLGCL
EDRRVREGGDTCGRKMCPGGRCTRSSRKEANRTRRNILEMVSNEEKEKEI
MEEHGRRERRSMIWRGTFVRSFLKKRRKAEPHVYSDFSTPERRGSIIEDN
KX
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