Gcaud2452.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2452.t1
Unique Name	Gcaud2452.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2446_length_5640_cov_4.383312	contig	NODE_2446_length_5640_cov_4.383312:317..1670 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2452	Gcaud2452	Gracilaria caudata M_176_S67 male	gene	NODE_2446_length_5640_cov_4.383312 317..1670 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2452.t1.CDS1	Gcaud2452.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2446_length_5640_cov_4.383312 317..1670 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2452.t1.exon1	Gcaud2452.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2446_length_5640_cov_4.383312 317..1670 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2452.t1.start1	Gcaud2452.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2446_length_5640_cov_4.383312 1668..1670 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2452.t1	Gcaud2452.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2446_length_5640_cov_4.383312 317..1670 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2446_length_5640_cov_4.383312:317..1670-
coding sequence from alignment at NODE_2446_length_5640_cov_4.383312:317..1670-

mRNA sequence

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=452bp
MELEIKVMCGVQEMGVVVEIYDGRECRLKLVWGSEEEFKWEWWREAFLGR
LEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKRKIRVWREWGPF
RYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVC
YNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHL
VLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGMIDTV
RLVGAYVGSMLCSRREVVEIERGREKEVEEVIWGIVGEIINVLSGREEVF
DSMEILATCLATNADKYEEDVGSLSERLIFFNYGESDEALMGVERLLGCL
EDRRVREGGDTCGRKMCPGGRCTRSSRKEANRTRRNILEMVSNEEKEKEI
MEEHGRRERRSMIWRGTFVRSFLKKRRKAEPHVYSDFSTPERRGSIIEDN
KX

spliced messenger RNA

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1354bp|location=Sequence derived from alignment at NODE_2446_length_5640_cov_4.383312:317..1670- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTTGGAGATAAAGGTGATGTGCGGGGTGCAAGAGATGGGAGTTGT
GGTAGAAATATACGATGGGAGAGAATGCAGATTGAAGTTGGTGTGGGGAA
GTGAAGAAGAATTCAAATGGGAATGGTGGCGAGAGGCGTTTCTTGGACGT
CTGGAAGGGATGAAGGAATGGCAAGAGGAGATGGGAATAAGGGGAGTGGA
GGTTGAGGACGGAGTGATGAAGAGGGGAAACGGAGTGCGTGTGTGGATGG
AAACGATAACGAAGAGGAAAATAAGGGTATGGAGGGAATGGGGACCATTT
CGATATAGAATATGTCGACTGGAACTGGAAAACAAGGAGCTACTGTGGGA
GCTCAAGAGTGAGAGCGGAAGACTTGCCGGATACACGGATAGGAACGAGG
TAACAACTCAGCTTGCATATCTTCCGATTCAGAGAATGAAGAAGGTATGC
TACAATCATGCAATGGAGGTTGTGTTGAAGAACGGATGTGTTGTGATTCG
TGAGTCATTGAAGGGAGGACTTGAATGTAAAGAAGAGGATGCGAATGAGA
CGGGTGAGAACGAAGAGAAGACGAGCTCAGGAAATGAGGGAAAGCATCTG
GTATTACTTTCGAACAAGTTTGAGGAAGATGAAGAACTGATGGTTTTGAA
AATGGCGGCGATAGAATATGGAAACAGTGAAGCTCTTAGGAGAAGCGTGG
GGATGCTATGCAGAAGATATGGAGGCGAGGTGGGGATGATTGACACTGTG
CGCCTTGTGGGGGCTTACGTTGGATCGATGCTTTGTTCCAGACGTGAGGT
AGTCGAAATCGAAAGAGGGAGGGAGAAGGAAGTGGAGGAAGTGATTTGGG
GGATAGTAGGTGAGATCATTAATGTACTAAGCGGAAGGGAAGAAGTATTT
GATTCTATGGAAATACTGGCGACTTGTTTGGCGACGAATGCAGACAAGTA
CGAAGAGGATGTCGGGAGTTTGTCAGAACGGCTGATATTTTTCAACTACG
GGGAAAGCGATGAAGCGCTGATGGGTGTTGAACGACTTCTTGGGTGCCTG
GAAGACAGGAGGGTGAGAGAAGGAGGGGACACATGTGGGAGAAAAATGTG
TCCTGGTGGAAGGTGTACAAGAAGCAGTCGGAAAGAGGCAAACCGGACAA
GACGAAATATTCTCGAGATGGTTTCGAATGAAGAGAAGGAGAAAGAAATT
ATGGAAGAGCATGGAAGAAGAGAGAGGAGAAGCATGATTTGGAGAGGAAC
GTTTGTCAGGTCCTTTCTAAAGAAAAGAAGAAAGGCGGAGCCGCATGTTT
ATTCGGACTTTTCGACACCGGAGAGAAGAGGATCCATTATTGAAGATAAC
AAAA

protein sequence of Gcaud2452.t1

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=452bp
MELEIKVMCGVQEMGVVVEIYDGRECRLKLVWGSEEEFKWEWWREAFLGR
LEGMKEWQEEMGIRGVEVEDGVMKRGNGVRVWMETITKRKIRVWREWGPF
RYRICRLELENKELLWELKSESGRLAGYTDRNEVTTQLAYLPIQRMKKVC
YNHAMEVVLKNGCVVIRESLKGGLECKEEDANETGENEEKTSSGNEGKHL
VLLSNKFEEDEELMVLKMAAIEYGNSEALRRSVGMLCRRYGGEVGMIDTV
RLVGAYVGSMLCSRREVVEIERGREKEVEEVIWGIVGEIINVLSGREEVF
DSMEILATCLATNADKYEEDVGSLSERLIFFNYGESDEALMGVERLLGCL
EDRRVREGGDTCGRKMCPGGRCTRSSRKEANRTRRNILEMVSNEEKEKEI
MEEHGRRERRSMIWRGTFVRSFLKKRRKAEPHVYSDFSTPERRGSIIEDN
KX

mRNA from alignment at NODE_2446_length_5640_cov_4.383312:317..1670-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1354bp|location=Sequence derived from alignment at NODE_2446_length_5640_cov_4.383312:317..1670- (Gracilaria caudata M_176_S67 male)
ATGGAGTTGGAGATAAAGGTGATGTGCGGGGTGCAAGAGATGGGAGTTGT
GGTAGAAATATACGATGGGAGAGAATGCAGATTGAAGTTGGTGTGGGGAA
GTGAAGAAGAATTCAAATGGGAATGGTGGCGAGAGGCGTTTCTTGGACGT
CTGGAAGGGATGAAGGAATGGCAAGAGGAGATGGGAATAAGGGGAGTGGA
GGTTGAGGACGGAGTGATGAAGAGGGGAAACGGAGTGCGTGTGTGGATGG
AAACGATAACGAAGAGGAAAATAAGGGTATGGAGGGAATGGGGACCATTT
CGATATAGAATATGTCGACTGGAACTGGAAAACAAGGAGCTACTGTGGGA
GCTCAAGAGTGAGAGCGGAAGACTTGCCGGATACACGGATAGGAACGAGG
TAACAACTCAGCTTGCATATCTTCCGATTCAGAGAATGAAGAAGGTATGC
TACAATCATGCAATGGAGGTTGTGTTGAAGAACGGATGTGTTGTGATTCG
TGAGTCATTGAAGGGAGGACTTGAATGTAAAGAAGAGGATGCGAATGAGA
CGGGTGAGAACGAAGAGAAGACGAGCTCAGGAAATGAGGGAAAGCATCTG
GTATTACTTTCGAACAAGTTTGAGGAAGATGAAGAACTGATGGTTTTGAA
AATGGCGGCGATAGAATATGGAAACAGTGAAGCTCTTAGGAGAAGCGTGG
GGATGCTATGCAGAAGATATGGAGGCGAGGTGGGGATGATTGACACTGTG
CGCCTTGTGGGGGCTTACGTTGGATCGATGCTTTGTTCCAGACGTGAGGT
AGTCGAAATCGAAAGAGGGAGGGAGAAGGAAGTGGAGGAAGTGATTTGGG
GGATAGTAGGTGAGATCATTAATGTACTAAGCGGAAGGGAAGAAGTATTT
GATTCTATGGAAATACTGGCGACTTGTTTGGCGACGAATGCAGACAAGTA
CGAAGAGGATGTCGGGAGTTTGTCAGAACGGCTGATATTTTTCAACTACG
GGGAAAGCGATGAAGCGCTGATGGGTGTTGAACGACTTCTTGGGTGCCTG
GAAGACAGGAGGGTGAGAGAAGGAGGGGACACATGTGGGAGAAAAATGTG
TCCTGGTGGAAGGTGTACAAGAAGCAGTCGGAAAGAGGCAAACCGGACAA
GACGAAATATTCTCGAGATGGTTTCGAATGAAGAGAAGGAGAAAGAAATT
ATGGAAGAGCATGGAAGAAGAGAGAGGAGAAGCATGATTTGGAGAGGAAC
GTTTGTCAGGTCCTTTCTAAAGAAAAGAAGAAAGGCGGAGCCGCATGTTT
ATTCGGACTTTTCGACACCGGAGAGAAGAGGATCCATTATTGAAGATAAC
AAAA

Coding sequence (CDS) from alignment at NODE_2446_length_5640_cov_4.383312:317..1670-

>Gcaud2452.t1 ID=Gcaud2452.t1|Name=Gcaud2452.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1354bp|location=Sequence derived from alignment at NODE_2446_length_5640_cov_4.383312:317..1670- (Gracilaria caudata M_176_S67 male)
ATGGAGTTGGAGATAAAGGTGATGTGCGGGGTGCAAGAGATGGGAGTTGT
GGTAGAAATATACGATGGGAGAGAATGCAGATTGAAGTTGGTGTGGGGAA
GTGAAGAAGAATTCAAATGGGAATGGTGGCGAGAGGCGTTTCTTGGACGT
CTGGAAGGGATGAAGGAATGGCAAGAGGAGATGGGAATAAGGGGAGTGGA
GGTTGAGGACGGAGTGATGAAGAGGGGAAACGGAGTGCGTGTGTGGATGG
AAACGATAACGAAGAGGAAAATAAGGGTATGGAGGGAATGGGGACCATTT
CGATATAGAATATGTCGACTGGAACTGGAAAACAAGGAGCTACTGTGGGA
GCTCAAGAGTGAGAGCGGAAGACTTGCCGGATACACGGATAGGAACGAGG
TAACAACTCAGCTTGCATATCTTCCGATTCAGAGAATGAAGAAGGTATGC
TACAATCATGCAATGGAGGTTGTGTTGAAGAACGGATGTGTTGTGATTCG
TGAGTCATTGAAGGGAGGACTTGAATGTAAAGAAGAGGATGCGAATGAGA
CGGGTGAGAACGAAGAGAAGACGAGCTCAGGAAATGAGGGAAAGCATCTG
GTATTACTTTCGAACAAGTTTGAGGAAGATGAAGAACTGATGGTTTTGAA
AATGGCGGCGATAGAATATGGAAACAGTGAAGCTCTTAGGAGAAGCGTGG
GGATGCTATGCAGAAGATATGGAGGCGAGGTGGGGATGATTGACACTGTG
CGCCTTGTGGGGGCTTACGTTGGATCGATGCTTTGTTCCAGACGTGAGGT
AGTCGAAATCGAAAGAGGGAGGGAGAAGGAAGTGGAGGAAGTGATTTGGG
GGATAGTAGGTGAGATCATTAATGTACTAAGCGGAAGGGAAGAAGTATTT
GATTCTATGGAAATACTGGCGACTTGTTTGGCGACGAATGCAGACAAGTA
CGAAGAGGATGTCGGGAGTTTGTCAGAACGGCTGATATTTTTCAACTACG
GGGAAAGCGATGAAGCGCTGATGGGTGTTGAACGACTTCTTGGGTGCCTG
GAAGACAGGAGGGTGAGAGAAGGAGGGGACACATGTGGGAGAAAAATGTG
TCCTGGTGGAAGGTGTACAAGAAGCAGTCGGAAAGAGGCAAACCGGACAA
GACGAAATATTCTCGAGATGGTTTCGAATGAAGAGAAGGAGAAAGAAATT
ATGGAAGAGCATGGAAGAAGAGAGAGGAGAAGCATGATTTGGAGAGGAAC
GTTTGTCAGGTCCTTTCTAAAGAAAAGAAGAAAGGCGGAGCCGCATGTTT
ATTCGGACTTTTCGACACCGGAGAGAAGAGGATCCATTATTGAAGATAAC
AAAA