Gcaud2372.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2372.t1
Unique NameGcaud2372.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length732
Homology
BLAST of Gcaud2372.t1 vs. uniprot
Match: A0A2V3IMD5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 171 bits (432), Expect = 1.280e-42
Identity = 119/361 (32.96%), Postives = 184/361 (50.97%), Query Frame = 0
Query:  384 SGNCKVDIGLGGFFEIPSRYGKVHFLPPFAYDKHRMYIRVEDASDSSGIDLFFIQGFDRHIWFCIIGTLVLFTFLKFFDRHFE----YDHLS-----QDGLSF---KDEGFRLLKAVQST---------------GKFG-------AFSCSGAFFLSATKCS--ATLLQEEPSSRFQSLEDIKKCKISPSEVCFLSGISFEDLWISTFEAGNEGNGSCGDKKATRVKTYDELFDKILNGECKFGVALESAAEVAIRERYCGRLVAQGDEIFSSGLSMVLPLRSSYADVDVNRIMSEGTLELLMEKRKSHMDVYFDSLAACETSRTS-LKFAKLRGFFIITVSVLGVGALVLLLGNVWRMRR 707
            S +C  DIG+GG+F+   RYGKV FLPPF +D++R+   V + +D+SG   FF++ FD   W  I+    +FT LK  D  F     Y  LS     +  L F       +RL KA QS+               GK                F + + + S  A+L+QE+ +S ++S ED + CKI PS+VC L G + E  W +     N  NG+        + TY+E++D + +G+CKF + LES     IR + CG+LV   + +++SGLSMV+P  S+  +      MS+ T+ LL+ +  S ++ +      C     S L F KL+ FFI+  SV      V+LLG+++ +++
Sbjct:   72 SNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSN-TDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGVSRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGN----PIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEA-----MSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKK 422          
BLAST of Gcaud2372.t1 vs. uniprot
Match: A0A2V3IUK7_9FLOR (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 128 bits (321), Expect = 1.030e-27
Identity = 94/322 (29.19%), Postives = 158/322 (49.07%), Query Frame = 0
Query:   31 KVDFLPGFTLDQYRVYTSIENTSFSSSADGDFFLGAFGGWVWLTILGIMVIVIFLKTFDNSYAPFEPREMRNPYEKSW----NFRRDDKDPSYLNLHRFKRSVQSTISNMLIQPEEEIQSDNEQKKGRNSFFRAYLNIIFAVFALFIILVYEASVTSSILKDKLTSDYQSVENFRSCDIKPNDVCFVKNEAFEYIWVTYIKPRHVDPKCFSIDAPGSRQILLNETRVDTYEELFDRIANGSCLYGVALETGGPTMMRELG--YCRKIVAQGDPIFEYDVAMALSISSNYTSTLSEATLQLKAKRVQPIKTSFFQENELCPPL 346
            +VD LP F  D  RV   + NT  S S    FF+  F    WL +  I+++    K  D  +AP    +  N    SW    +F R        N +R   S++ST   +++Q + +I    + + G ++F    LN+I  +F L ++L YEAS+T++++++ + SDYQSVE+ ++C IKP DVC     A    W   I        C   ++ G            ++EE  D + NG+C +G+ L++   T+   +   YC ++++ G+PI+   ++M L  +SN T  +  ATL+L+ +   P    +FQ    C P+
Sbjct:  131 RVDLLPPFVYDGIRVTFHVSNTRRSGSKL--FFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNA-ANSWGRCLHFLRT-------NWNRLITSIRSTTLRIVLQSDHDIV---QNQHGAHNF---NLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAI----AYGDCHR-ESKGKNYFR------GSFEETLDAVKNGTCKFGLVLDS---TIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPI 422          
BLAST of Gcaud2372.t1 vs. uniprot
Match: R7Q540_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 69.7 bits (169), Expect = 8.140e-10
Identity = 42/166 (25.30%), Postives = 78/166 (46.99%), Query Frame = 0
Query:  182 TSSILKDKLTSDYQSVENFRSCDIKPNDVCFVKNEAFEYIWVTYIKPR--HVD-PKCFSIDAPGSRQILLNETRVDTYEELFDRIANGSCLYGVALETGGPTMMRELGYCRKIVAQGDPIFEYDVAMALSISSNYTSTLSEATLQLKAKRVQPIKTSFFQENELCP 344
            ++++++D L+S Y+ +++ ++C+++P+DVC  K  A +  W+  I     H + P  FS                  Y++  D +    CLY + L + G  + +   YC +++  G+P     ++  L   SN TS LSE T+ L    V P    + +    CP
Sbjct:   10 SAALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGKNACHKEKPVYFS-----------------RYKDGIDNLLTKKCLYMLTLSSSGNELTQR-EYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKCP 157          
The following BLAST results are available for this feature:
BLAST of Gcaud2372.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IMD5_9FLOR1.280e-4232.96Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK7_9FLOR1.030e-2729.19Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q540_CHOCR8.140e-1025.30Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 61..222
e-value: 3.0E-6
score: 28.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 704..731
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 160..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..159
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 178..442
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 681..703
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 462..680
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 443..461
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..61
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 388..634
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 160..182
NoneNo IPR availableTMHMMTMhelixcoord: 681..703

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2249_length_6306_cov_4.837490contigNODE_2249_length_6306_cov_4.837490:1059..5753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2372.t1Gcaud2372.t1Gracilaria caudata M_176_S67 malemRNANODE_2249_length_6306_cov_4.837490 1059..5753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2372.t1 ID=Gcaud2372.t1|Name=Gcaud2372.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=732bp
MIEEPISGIPPDLKPDQVTHVRNLTGIIANKVDFLPGFTLDQYRVYTSIE
NTSFSSSADGDFFLGAFGGWVWLTILGIMVIVIFLKTFDNSYAPFEPREM
RNPYEKSWNFRRDDKDPSYLNLHRFKRSVQSTISNMLIQPEEEIQSDNEQ
KKGRNSFFRAYLNIIFAVFALFIILVYEASVTSSILKDKLTSDYQSVENF
RSCDIKPNDVCFVKNEAFEYIWVTYIKPRHVDPKCFSIDAPGSRQILLNE
TRVDTYEELFDRIANGSCLYGVALETGGPTMMRELGYCRKIVAQGDPIFE
YDVAMALSISSNYTSTLSEATLQLKAKRVQPIKTSFFQENELCPPLVLCY
PRRIREGNEKQSPEDACPAREWKKACKVGFCSFSGNCKVDIGLGGFFEIP
SRYGKVHFLPPFAYDKHRMYIRVEDASDSSGIDLFFIQGFDRHIWFCIIG
TLVLFTFLKFFDRHFEYDHLSQDGLSFKDEGFRLLKAVQSTGKFGAFSCS
GAFFLSATKCSATLLQEEPSSRFQSLEDIKKCKISPSEVCFLSGISFEDL
WISTFEAGNEGNGSCGDKKATRVKTYDELFDKILNGECKFGVALESAAEV
AIRERYCGRLVAQGDEIFSSGLSMVLPLRSSYADVDVNRIMSEGTLELLM
EKRKSHMDVYFDSLAACETSRTSLKFAKLRGFFIITVSVLGVGALVLLLG
NVWRMRRRKATSAHGTGSLEGLEGMEGDAAQ*
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