Gcaud2365.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2365.t1
Unique NameGcaud2365.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length324
Homology
BLAST of Gcaud2365.t1 vs. uniprot
Match: A0A2V3IUK7_9FLOR (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 167 bits (424), Expect = 1.680e-44
Identity = 110/327 (33.64%), Postives = 160/327 (48.93%), Query Frame = 0
Query:    2 CDIGVGGWFQTPSRFHQVDFLPPFTTDSYRVFADFSNTVIDLQPHFFLTSFSTNAWILIAVQIVTFAVLRLMDSRFAPAPSYHPLPNTQPFFIRFWYGLINHPLSYRIRRSIRITLSRMILSPDVDDIRN---AAQWFIDLLQALCSLFLLMVYSASGTFEL-----------------------------------FWRKVIAANERDCHRNDSPT--FLRTYEEVFSHVSQKKCLYGLHLESTAKDAIHNRYCGRFTLIGDELYTGGLSMILPKHSPMTKHMTEATLALQDIADSPRMTKYFMNRRNCEANLATTVGAKKLELFF 288
            C+IG+GGWF +  R  +VD LPPF  D  RV    SNT       FF+T+F   +W+ +   I+ FA+ + +D RFAP PS    PN    + R  + L  +    R+  SIR T  R++L  D D ++N   A  + ++L+  +  L +++ Y AS T  L                                   FW   IA    DCHR       F  ++EE    V    C +GL L+ST ++AIH +YCG+    G+ +YTGGLSMILPK+S +TK M  ATL L++ A +P + +YF     C     + +  +KL+L F
Sbjct:  115 CEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADE-PNAANSWGRCLHFLRTN--WNRLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYG--DCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLF 436          
BLAST of Gcaud2365.t1 vs. uniprot
Match: R7QE12_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 123 bits (308), Expect = 8.170e-31
Identity = 64/158 (40.51%), Postives = 90/158 (56.96%), Query Frame = 0
Query:    4 IGVGGWFQTPSRFHQVDFLPPFTTDSYRVFADFSNTVIDLQPHFFLTSFSTNAWILIAVQIVTFAVLRLMDSRFAPAP-SYHPLPNTQPFFIRFWYGLINHPLSYRIRRSIRITLSRMILSPDVDDIR---NAAQWFIDLLQALCSLFLLMVYSASGT 157
            + VGGWF+ P RF +VDFLPPF  D   +     NT       FF+T+FST  W  I   +  F  L+++D RF P   SY PLP T     R  + L+   + YR+R++++ TLSRM+     D I    ++ QW ++LL ALCSLFL++ Y A+ T
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYEAAMT 158          
BLAST of Gcaud2365.t1 vs. uniprot
Match: R7Q656_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q656_CHOCR)

HSP 1 Score: 64.3 bits (155), Expect = 1.380e-9
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   72 LMDSRFAPAP-SYHPLPNTQPFFIRFWYGLINHPLSYRIRRSIRITLSRMILSPDVDDIR---NAAQWFIDLLQALCSLFLLMVYSASGT 157
            ++D RF P   SY PLP T     R  + L+   + YR+R++++ T+SRM+     D I    ++ QW ++LL ALCSLFL++ Y ++ T
Sbjct:    1 MLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTMSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYESAMT 90          
The following BLAST results are available for this feature:
BLAST of Gcaud2365.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IUK7_9FLOR1.680e-4433.64Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7QE12_CHOCR8.170e-3140.51Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q656_CHOCR1.380e-937.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 308..323
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..134
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..154
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 155..285
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 286..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..46
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 2..254
NoneNo IPR availableTMHMMTMhelixcoord: 139..161
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 285..307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1784_length_8405_cov_4.763050contigNODE_1784_length_8405_cov_4.763050:6277..7541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2365.t1Gcaud2365.t1Gracilaria caudata M_176_S67 malemRNANODE_1784_length_8405_cov_4.763050 6277..7541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2365.t1 ID=Gcaud2365.t1|Name=Gcaud2365.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MCDIGVGGWFQTPSRFHQVDFLPPFTTDSYRVFADFSNTVIDLQPHFFLT
SFSTNAWILIAVQIVTFAVLRLMDSRFAPAPSYHPLPNTQPFFIRFWYGL
INHPLSYRIRRSIRITLSRMILSPDVDDIRNAAQWFIDLLQALCSLFLLM
VYSASGTFELFWRKVIAANERDCHRNDSPTFLRTYEEVFSHVSQKKCLYG
LHLESTAKDAIHNRYCGRFTLIGDELYTGGLSMILPKHSPMTKHMTEATL
ALQDIADSPRMTKYFMNRRNCEANLATTVGAKKLELFFSLSFLLLGLIWI
VLVFKLLRSFMKRRRMAADNDVV*
back to top