Gcaud2356.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2356.t1
Unique NameGcaud2356.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length327
Homology
BLAST of Gcaud2356.t1 vs. uniprot
Match: A0A2V3J060_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J060_9FLOR)

HSP 1 Score: 238 bits (608), Expect = 9.360e-74
Identity = 121/217 (55.76%), Postives = 154/217 (70.97%), Query Frame = 0
Query:    1 MRVLPTAQHAL--RQVTEISSTAFPSAIRTLASIIASITMVITIYLGYRKCMRGRDGSFTADRGQEQAFSIPLTSYEEPGNAYSDEYLPVYVGGGRYVYVSRNELPRDPPHTVRRDASVPPRFDANTLKQFEATNEEKQHPCPICLEELETEPVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCRVRIEESASFDMLRGKVIELPSLAHAPGERNGVV 215
            M VL T Q  +  +   ++ ST+FP+AIRTLAS++AS+TMV+TIYLGY+KC R R  SF A+R +E A   PLTS ++  N + D  +PVYVG GRY+Y+SR+E+PR P H VR ++   PRFDA++LK FEA   E+Q  C ICLE+LE E VSAGQCLHLMHT+CL SWL KD+NSNCPVCRVRI ESAS + L  + + +PS     G   G V
Sbjct:    1 MPVLLTVQRLVSRQSAVDVGSTSFPAAIRTLASVVASVTMVVTIYLGYKKCFRNRLDSFEAERRREAAHGFPLTSLDQGSNGFED-LVPVYVGEGRYMYISRDEIPRRPQHVVRVNSVHSPRFDADSLKIFEAGPSERQQACAICLEQLEEETVSAGQCLHLMHTNCLASWLRKDINSNCPVCRVRIFESASLESLGERAVGIPSQTAGDGSEMGNV 216          
BLAST of Gcaud2356.t1 vs. uniprot
Match: A0A2V3IYA4_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYA4_9FLOR)

HSP 1 Score: 82.8 bits (203), Expect = 2.410e-15
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0
Query:  124 NTLKQFEATNEEKQHPCPICLEELETEPVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCRVRIEESA 189
            N+L  F A  +++  PC +CLE+L +  VS+GQCLH++HT CL +WL KD  + CPVCRV IEE A
Sbjct:  112 NSLASFRAAEKDRALPCTVCLEDLGSRGVSSGQCLHVIHTDCLQTWLAKDKKNACPVCRVPIEEGA 177          
BLAST of Gcaud2356.t1 vs. uniprot
Match: A0A2V3J0E8_9FLOR (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E8_9FLOR)

HSP 1 Score: 81.3 bits (199), Expect = 4.370e-15
Identity = 45/101 (44.55%), Postives = 53/101 (52.48%), Query Frame = 0
Query:   77 PGNAYSDEYLPVYVGGGRYVYVSRNELPRDPPHTVRRDASVP----PRFDANTLKQFEATNEEKQHPCPICLEELETEPVSAGQCLHLMHTSCLTSWLNKD 173
            P  A+   Y P+YV                 PH     A+ P    PR D + L  F+A  +EK +PCPICL  LE E VS GQCLHL+HTSCL SWL KD
Sbjct:   24 PRAAHHIHYNPMYVSAA--------------PHQSHPSAAPPELQDPRIDVDDLLSFDAPEKEKNNPCPICLAPLEDEQVSTGQCLHLIHTSCLRSWLAKD 110          
BLAST of Gcaud2356.t1 vs. uniprot
Match: A0A2V3J043_9FLOR (Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J043_9FLOR)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-7
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 0
Query:  125 TLKQFEATNEEKQHPCPICLEELETEPVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCR 182
            +L  F+         C ICLE L    VS+GQCLHL+H +CL +WL     + CPVCR
Sbjct:   76 SLASFKVAERHASRECAICLEALADNVVSSGQCLHLLHQTCLNAWLASSPRALCPVCR 133          
The following BLAST results are available for this feature:
BLAST of Gcaud2356.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J060_9FLOR9.360e-7455.76RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3IYA4_9FLOR2.410e-1553.03RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J0E8_9FLOR4.370e-1544.55RING-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3J043_9FLOR1.560e-744.83Putative E3 ubiquitin-protein ligase RHA1A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 140..181
e-value: 1.5E-6
score: 37.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 140..182
e-value: 3.6E-9
score: 36.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 140..182
score: 12.769585
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 121..202
e-value: 2.9E-14
score: 54.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..307
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 120..260
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..326
NoneNo IPR availableCDDcd16448RING-H2coord: 140..182
e-value: 2.07715E-12
score: 59.0027
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 134..188
NoneNo IPR availableTMHMMTMhelixcoord: 24..46
IPR032832E3 ubiquitin-protein ligase synoviolin/Hrd1PANTHERPTHR22763:SF169E3 UBIQUITIN-PROTEIN LIGASE SYNOVIOLINcoord: 120..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:52630..53610 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2356.t1Gcaud2356.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 52630..53610 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MRVLPTAQHALRQVTEISSTAFPSAIRTLASIIASITMVITIYLGYRKCM
RGRDGSFTADRGQEQAFSIPLTSYEEPGNAYSDEYLPVYVGGGRYVYVSR
NELPRDPPHTVRRDASVPPRFDANTLKQFEATNEEKQHPCPICLEELETE
PVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCRVRIEESASFDMLRGKVIE
LPSLAHAPGERNGVVSIETGLRRQDGVILPATDNMASIQVETEAASQPVA
SEPTQNTRENNSESNGERDSSQQENAGRPSMSEVHTQSGVDNADVLATQQ
MGSSMVGGSGRISLLGNDQEVAVANK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR032832E3_lig_synoviolin/Hrd1