Gcaud2218.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2218.t1
Unique NameGcaud2218.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length238
Homology
BLAST of Gcaud2218.t1 vs. uniprot
Match: A0A2V3IMW8_9FLOR (39S ribosomal protein L46, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMW8_9FLOR)

HSP 1 Score: 242 bits (617), Expect = 1.060e-76
Identity = 122/188 (64.89%), Postives = 151/188 (80.32%), Query Frame = 0
Query:    1 MQRALGWRSY--RRLHTSVKSIEQHVLKKVKRGLDRLPKEGSDPAANFKHGWRLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQFPQVLVSKDDVKMKEYAEKA-RRLTAPA 185
            MQ A G R+   + L   +K ++ HV KK+KRG+DRLPK+G DPAA FKHGWRLA+AAVLERYPV+TPD H FE +YLLGR ++ QKRARPIP   FLSEKDR+ G TEP+FDDP+AD+YVPAPRVT+AD TND KSL RALQERLYFV+RR++ S +MQFPQVL +K DV +++YA+ A + +T PA
Sbjct:    1 MQAAGGLRAAAPKALPKRLKLLQDHVRKKLKRGVDRLPKDGPDPAAQFKHGWRLATAAVLERYPVITPDLHPFEDKYLLGRILEMQKRARPIPPSFFLSEKDRLGGITEPTFDDPIADRYVPAPRVTDADRTNDHKSLHRALQERLYFVVRRTEKSKNMQFPQVLATKPDVTLRQYAQHALKSVTVPA 188          
BLAST of Gcaud2218.t1 vs. uniprot
Match: R7QDY3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDY3_CHOCR)

HSP 1 Score: 189 bits (479), Expect = 9.840e-56
Identity = 92/170 (54.12%), Postives = 124/170 (72.94%), Query Frame = 0
Query:   11 RRLHTSVKSIEQHVLKKVKRGLDRLPKEGSDPAANFKHGWRLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQFPQVLVSKDDVKMKEYAEKARR 180
            R +  + + + Q+VL+K+K+G++RLP +G DPAA+F  GWRLA AAV+ERYPVVTP+   FE+EYL GRF++ Q+RARPI   LFL+EKD +EG+ EP   DP A+ Y PAPR TEAD T D +SL+RAL ERLYF+++R +     QFPQ+L + + V +  YAE A R
Sbjct:   25 RAISNNARIVRQNVLRKMKKGVERLPSQGPDPAASFGKGWRLACAAVVERYPVVTPECDPFESEYLTGRFLEMQRRARPISPALFLTEKDLMEGKREPDLSDPYAEMYQPAPRTTEADRTGDMRSLERALDERLYFLVKRGE-KGRFQFPQILAADEKVPLWRYAELAWR 193          
BLAST of Gcaud2218.t1 vs. uniprot
Match: A0A7S2F346_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F346_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.250e-14
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 0
Query:   43 AANFKHGWRLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFL------SEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQFPQVLVSKDDVKMKEYAEKARRLTAPAHSLDDACPSM--IIHF 199
            AA+   GW L S AV+ER P+V PD   ++ E+L  +   +  + R  P  + +       E D V  + E S  + V  KY PAPRVT+AD  ND +S++RAL E LY V+++  T     FPQ  V +D++  K          A   ++D+ C  +  + HF
Sbjct:   64 AADMNLGWLLKSTAVVERPPIVLPDMPDWKREFLEIQASLEYYKLRDYPPGIGVPHPSEPDEDDMVSDQNEDSDGEQVM-KYEPAPRVTQADEDNDLRSMERALPESLYLVVKQKSTGT-WAFPQTTVKEDEMLGK----------AAQRAIDETCSELPELFHF 216          
BLAST of Gcaud2218.t1 vs. uniprot
Match: E1ZJP2_CHLVA (MRP-L46 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJP2_CHLVA)

HSP 1 Score: 66.2 bits (160), Expect = 2.260e-9
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 0
Query:   43 AANFKHGWRLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIR 149
            AA    G +L    VLER PV+ PDP ++E E+   +    +K  + +P       KD VE +      D    +Y PAPR+T AD  ND++SL R L +RL+ ++R
Sbjct:   47 AAAAASGGKLFGVCVLERLPVIIPDPPEWEQEHREWQQAITEKYFKVLP-------KDFVELKDSERQADDAGARYEPAPRITAADKANDRRSLQRRLDQRLFMLVR 146          
BLAST of Gcaud2218.t1 vs. uniprot
Match: A0A218XF04_PUNGR (39S ribosomal protein L46, mitochondrial n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218XF04_PUNGR)

HSP 1 Score: 65.5 bits (158), Expect = 3.260e-9
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 0
Query:   51 RLASAAVLERYPVVTP--DPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQ-----FPQVLVSKDDVKMKEYAEKA 178
            ++ ++ + ER PVV P  DP  +  +    R+  Q +R  P     FL+ K    G+ E  FD      YVPAPR+TEAD TND+KSL+RAL  RLY ++  +   A  +     FP+ +   D+  +++ AE A
Sbjct:   25 KIVTSVLFERLPVVIPKIDPVVYAFQEFSFRWQQQYRRKYPDE---FLN-KSSTRGKGEYQFD------YVPAPRITEADKTNDRKSLERALDRRLYLLLYGNAYGAPTEDPVWHFPEKVYESDET-LRKCAESA 148          
BLAST of Gcaud2218.t1 vs. uniprot
Match: A0A1Y1IDZ7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDZ7_KLENI)

HSP 1 Score: 64.7 bits (156), Expect = 8.960e-9
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:   51 RLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLS-EKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIR 149
            RL   A+LER P++ PDP K++++Y   +F   QK  R  P   F   +    EG      D        PAPR+TE D T + KSL+RAL  RLY +++
Sbjct:   54 RLFGVALLERLPIIVPDPPKWQSDYEDAKFERDQKLRRAYPPEFFAGFDGQSSEGARGAEVD------IEPAPRITEDDKTGNVKSLNRALDRRLYLMVQ 147          
BLAST of Gcaud2218.t1 vs. uniprot
Match: UPI0009014B00 (39S ribosomal protein L46, mitochondrial n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009014B00)

HSP 1 Score: 63.9 bits (154), Expect = 1.110e-8
Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 0
Query:   31 GLDRLPKEGSDPAANFKHGWRLASAAVLERYPVVTP--DPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSA 155
            GL  L K G   +++   G ++ ++ + ER PVV P  DP  +  +    R+  Q +R  P     FL + D   G+ E   D      Y PAPR+TEAD TND+KSL RAL +RLY ++  +  S+
Sbjct:    6 GLALLAKRGFSTSSS---GDKIVASVLFERLPVVVPKIDPVVYAFQEFSFRWRQQYRREYPEN---FLKKAD-TRGKGEYQID------YTPAPRITEADKTNDRKSLQRALDKRLYLLLHGTSLSS 119          
BLAST of Gcaud2218.t1 vs. uniprot
Match: UPI0009E18D71 (39S ribosomal protein L46, mitochondrial isoform X1 n=3 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E18D71)

HSP 1 Score: 63.2 bits (152), Expect = 1.740e-8
Identity = 52/146 (35.62%), Postives = 70/146 (47.95%), Query Frame = 0
Query:   40 SDPAANFKHGWRLASAAVLERYPVVTP--DPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQ-----FPQVLVSKDDVKMKEYAEKA 178
            S  AA+  H  ++ +A + ER PVV P  DP  +  +    R+  Q +R  P          D V G+ E          YVPAPR+TEAD  NDQKSL RAL  RLY ++  S   A  +     FP+ +   +D  M+  AE A
Sbjct:   25 SSTAASASHD-QIVAAVLFERLPVVIPKIDPIVYAFQEFSLRWGQQYRRKYP----------DEVLGKGEARGKGDYHIDYVPAPRITEADKINDQKSLKRALDRRLYLLLYGSTFGAPSKKPVWHFPEKVYENEDT-MRLCAESA 158          
BLAST of Gcaud2218.t1 vs. uniprot
Match: UPI0009F6147C (39S ribosomal protein L46, mitochondrial isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F6147C)

HSP 1 Score: 63.2 bits (152), Expect = 2.270e-8
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 0
Query:   51 RLASAAVLERYPVVTP--DPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKDRVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHMQFP 160
            ++ +A + ER PVV P  DP  +  +    R+  Q +R  P          D V GR E          YVPAPR+TEAD TNDQKSL RAL  RLY ++  S   A  + P
Sbjct:   28 KIIAAVLFERLPVVIPKIDPVVYAFQEFSLRWGQQYRRKYP----------DEVLGRGEARGKGDYQIDYVPAPRITEADKTNDQKSLKRALDRRLYLLLYGSTYGAPNKKP 129          
BLAST of Gcaud2218.t1 vs. uniprot
Match: A0A7J7IET9_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IET9_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 4.570e-8
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 0
Query:   47 KHGWRLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLF--LSEKDRVEGRTEPSFDDPVADK--------YVPAPRVTEADATNDQKSLDRALQERLYFVIRRSKTSAHM---QFPQ 161
            +H +R A A +LER P++ P+P   E  +   R +    +AR +P  +F  LS+  R +   E    DP   +        Y PAPR TEAD TN++ SLDR L   L+ +++R    A     QFPQ
Sbjct:   71 QHPFRYAVATILERTPIILPEPTPEERAFRRFRLLMANAQARELPPEVFELLSQSGRPKQNAEM---DPKRSELFELDEGEYEPAPRETEADRTNNRHSLDRKLDRWLFLLVQRKLGPAGRAIWQFPQ 195          
The following BLAST results are available for this feature:
BLAST of Gcaud2218.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMW8_9FLOR1.060e-7664.8939S ribosomal protein L46, mitochondrial n=1 Tax=G... [more]
R7QDY3_CHOCR9.840e-5654.12Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2F346_9STRA6.250e-1433.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
E1ZJP2_CHLVA2.260e-936.45MRP-L46 domain-containing protein n=1 Tax=Chlorell... [more]
A0A218XF04_PUNGR3.260e-935.5639S ribosomal protein L46, mitochondrial n=1 Tax=P... [more]
A0A1Y1IDZ7_KLENI8.960e-938.00Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
UPI0009014B001.110e-836.2239S ribosomal protein L46, mitochondrial n=2 Tax=I... [more]
UPI0009E18D711.740e-835.6239S ribosomal protein L46, mitochondrial isoform X... [more]
UPI0009F6147C2.270e-839.2939S ribosomal protein L46, mitochondrial isoform X... [more]
A0A7J7IET9_9RHOD4.570e-835.16Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021757Ribosomal protein L46, N-terminalPFAMPF11788MRP-L46coord: 50..75
e-value: 8.6E-5
score: 23.2
NoneNo IPR availableGENE3D3.90.79.10Nucleoside Triphosphate Pyrophosphohydrolasecoord: 132..215
e-value: 3.5E-5
score: 25.5
NoneNo IPR availablePANTHERPTHR13124:SF1239S RIBOSOMAL PROTEIN L46, MITOCHONDRIALcoord: 37..178
IPR04000839S ribosomal protein L46, mitochondrialPANTHERPTHR1312439S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATEDcoord: 37..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_492_length_23814_cov_5.019981contigNODE_492_length_23814_cov_5.019981:19415..20553 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2218.t1Gcaud2218.t1Gracilaria caudata M_176_S67 malemRNANODE_492_length_23814_cov_5.019981 19415..20553 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MQRALGWRSYRRLHTSVKSIEQHVLKKVKRGLDRLPKEGSDPAANFKHGW
RLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKD
RVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRR
SKTSAHMQFPQVLVSKDDVKMKEYAEKARRLTAPAHSLDDACPSMIIHFA
QTDTRQREKTKILVENGTFDVPHVDLVKTVHKDQVST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021757Ribosomal_L46_N
IPR040008MRPL46