|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 554065.XP_005846128.1 |
| PFAMs | MRP-L46 |
| Max annot lvl | 3041|Chlorophyta |
| KEGG ko | ko:K17427 |
| Evalue | 5.29e-10 |
| EggNOG OGs | KOG4548@1|root,KOG4548@2759|Eukaryota,37NKE@33090|Viridiplantae,34IFD@3041|Chlorophyta |
| Description | 39S ribosomal protein L46 |
| COG category | J |
| BRITE | br01610,ko00000,ko03011 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2218.t1.stop1 | Gcaud2218.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_492_length_23814_cov_5.019981 19415..19417 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2218.t1.start1 | Gcaud2218.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_492_length_23814_cov_5.019981 20551..20553 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
MQRALGWRSYRRLHTSVKSIEQHVLKKVKRGLDRLPKEGSDPAANFKHGW
RLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKD
RVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRR
SKTSAHMQFPQVLVSKDDVKMKEYAEKARRLTAPAHSLDDACPSMIIHFA
QTDTRQREKTKILVENGTFDVPHVDLVKTVHKDQVST* back to topspliced messenger RNA >Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:19415..20553- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGCGTGCGTTGGGTTGGCGCTCGTACAGAAGGCTGCACACCAGCGT
CAAATCGATCGAACAACATGTGTTAAAGAAGGTCAAGCGCGGGCTCGACC
GTCTCCCCAAGGAGGGATCCGACCCAGCAGCCAACTTCAAACACGGCTGG
CGTCTGGCCTCAGCGGCCGTTCTCGAGCGCTATCCGGTCGTCACACCCGA
CCCGCACAAGTTCGAGGCTGAGTATCTACTGGGTCGTTTCATCGATCAGC
AGAAGCGGGCGCGTCCCATTCCAGCGTATTTGTTTCTTTCGGAGAAGGAC
CGCGTTGAAGGGCGCACAGAGCCCAGTTTCGATGATCCAGTCGCGGATAA
ATATGTGCCAGCGCCGAGAGTTACTGAGGCTGATGCAACCAACGATCAAA
AGTCTTTGGACCGTGCGTTACAGGAGCGTTTGTACTTTGTGATTCGACGG
AGTAAAACCTCGGCACACATGCAGTTTCCGCAGGTTCTGGTGTCGAAGGA
TGACGTTAAGATGAAAGAGTATGCTGAAAAAGCACGACGTCTCACCGCCC
CTGCTCACTCTCTCGATGATGCATGCCCTTCGATGATTATCCACTTTGCT
CAAACGGATACCCGTCAGAGGGAGAAGACGAAAATTTTGGTAGAAAATGG
AACGTTTGATGTCCCGCATGTTGACCTTGTTAAGACTGTGCACAAGGACC
AGGTGTCGACATGA back to topprotein sequence of Gcaud2218.t1 >Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MQRALGWRSYRRLHTSVKSIEQHVLKKVKRGLDRLPKEGSDPAANFKHGW
RLASAAVLERYPVVTPDPHKFEAEYLLGRFIDQQKRARPIPAYLFLSEKD
RVEGRTEPSFDDPVADKYVPAPRVTEADATNDQKSLDRALQERLYFVIRR
SKTSAHMQFPQVLVSKDDVKMKEYAEKARRLTAPAHSLDDACPSMIIHFA
QTDTRQREKTKILVENGTFDVPHVDLVKTVHKDQVST* back to topmRNA from alignment at NODE_492_length_23814_cov_5.019981:19415..20553- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1139bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:19415..20553- (Gracilaria caudata M_176_S67 male)
ATGCAGCGTGCGTTGGGTTGGCGCTCGTACAGAAGGCTGCACACCAGCGT
CAAATCGATCGAACAACATGTGTTAAAGAAGGTCAAGCGCGGGCTCGACC
GTCTCCCCAAGGAGGGATCCGACCCAGCAGCCAACTTCAAACACGGCTGG
CGTCTGGCCTCAGCGGCCGTTCTCGAGCGCTATCCGGTCGTCACACCCGA
CCCGCACAAGTTCGAGGCTGAGTATCTACTGGGTCGTTTCATCGATCAGC
AGAAGCGGGCGCGTCCCATTCCAGCGTATTTGTTTCTTTCGGAGAAGGAC
CGCGTTGAAGGGCGCACAGAGCCCAGTTTCGATGATCCAGTCGCGGATAA
ATATGTGCCAGCGCCGAGAGTTACTGAGGCTGATGCAACCAACGATCAAA
AGTCTTTGGACCGTGCGTTACAGGAGCGTTTGTACTTTGTGATTCGACGG
AGTAAAACCTCGGCACACATGCAGTTTCCGCAGGTTCTGGTGTCGAAGGA
TGACGTTAAGATGAAAGAGTATGCTGAAAGTGCGTTGAAGAGCGTTACTG
TACACGGGTCGCGCCCCGTGTTTCACTTTGTTTCGTATTCACCAGCTTGT
CACCTGGAGCACGTTTATCCTCTTTCATATCAACAGAAGCACGACGTGTA
TGGCGTGAAGATCTTTTTTTATCGAGCAATGTTGCTTTCGGGAGATGTCA
GTCAAACTCGCAACTGTGAGGATTACATATGGGCGAGAGATTGTGAGCTA
CCTGATTTGCTAAGCCAAGAGTATTACTCGGCCATCAAACCTATGCTGCT
GGGCAATGGTCCTACAATACATCCAGCTGATAAAGCAAAATTGTAAATGC
GCTCTTCGGTTGGGTGCACCTGCACAGTTTGTACAACCTTCTTTAATCGA
GTTGCAATTCACAGCAGTCTCGCCTGTACGATAGCTCTTGAACTAACTTT
TGCTTTTCTATGCAGCTCACCGCCCCTGCTCACTCTCTCGATGATGCATG
CCCTTCGATGATTATCCACTTTGCTCAAACGGATACCCGTCAGAGGGAGA
AGACGAAAATTTTGGTAGAAAATGGAACGTTTGATGTCCCGCATGTTGAC
CTTGTTAAGACTGTGCACAAGGACCAGGTGTCGACATGA back to topCoding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:19415..20553- >Gcaud2218.t1 ID=Gcaud2218.t1|Name=Gcaud2218.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:19415..20553- (Gracilaria caudata M_176_S67 male)
ATGCAGCGTGCGTTGGGTTGGCGCTCGTACAGAAGGCTGCACACCAGCGT
CAAATCGATCGAACAACATGTGTTAAAGAAGGTCAAGCGCGGGCTCGACC
GTCTCCCCAAGGAGGGATCCGACCCAGCAGCCAACTTCAAACACGGCTGG
CGTCTGGCCTCAGCGGCCGTTCTCGAGCGCTATCCGGTCGTCACACCCGA
CCCGCACAAGTTCGAGGCTGAGTATCTACTGGGTCGTTTCATCGATCAGC
AGAAGCGGGCGCGTCCCATTCCAGCGTATTTGTTTCTTTCGGAGAAGGAC
CGCGTTGAAGGGCGCACAGAGCCCAGTTTCGATGATCCAGTCGCGGATAA
ATATGTGCCAGCGCCGAGAGTTACTGAGGCTGATGCAACCAACGATCAAA
AGTCTTTGGACCGTGCGTTACAGGAGCGTTTGTACTTTGTGATTCGACGG
AGTAAAACCTCGGCACACATGCAGTTTCCGCAGGTTCTGGTGTCGAAGGA
TGACGTTAAGATGAAAGAGTATGCTGAAAAAGCACGACGTCTCACCGCCC
CTGCTCACTCTCTCGATGATGCATGCCCTTCGATGATTATCCACTTTGCT
CAAACGGATACCCGTCAGAGGGAGAAGACGAAAATTTTGGTAGAAAATGG
AACGTTTGATGTCCCGCATGTTGACCTTGTTAAGACTGTGCACAAGGACC
AGGTGTCGACATGA back to top
|