Gcaud2204.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2204.t1
Unique NameGcaud2204.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length112
Homology
BLAST of Gcaud2204.t1 vs. uniprot
Match: A0A2V3J374_9FLOR (60S ribosomal protein L35a-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J374_9FLOR)

HSP 1 Score: 205 bits (522), Expect = 8.360e-67
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 0
Query:    1 MSQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            + QVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDR D +FYLGKRIAYVY+A TLKKSRTGE+SKYRFMWGRIIA HGNNGHVRAKFTKNLP  SIG+PVRIMLYPS I
Sbjct:    4 VPQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRNDAKFYLGKRIAYVYRAKTLKKSRTGEMSKYRFMWGRIIATHGNNGHVRAKFTKNLPPVSIGRPVRIMLYPSNI 114          
BLAST of Gcaud2204.t1 vs. uniprot
Match: R7Q341_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q341_CHOCR)

HSP 1 Score: 179 bits (454), Expect = 1.840e-56
Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    2 SQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            +  RLH KG+HLGYKRNRRNQHCGQSR+QIEGVKDRKD QFY+GKR+AYVYK    K++ +G  SKYR MWGRIIAPHGNNGHVRAKF KNLP  SIGK VR+MLYPS I
Sbjct:    3 NTARLHSKGIHLGYKRNRRNQHCGQSRLQIEGVKDRKDAQFYMGKRVAYVYKGLVEKRTPSGASSKYRVMWGRIIAPHGNNGHVRAKFRKNLPPNSIGKGVRVMLYPSTI 112          
BLAST of Gcaud2204.t1 vs. uniprot
Match: UPI001E1D5AC2 (60S ribosomal protein L35a-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5AC2)

HSP 1 Score: 148 bits (374), Expect = 2.860e-44
Identity = 70/111 (63.06%), Postives = 90/111 (81.08%), Query Frame = 0
Query:    1 MSQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            +  VRL+ K V++GYKR+ +NQH  QSR++IEGV  R +T FY+GKR+AYVYKA T K++ TG  S+YR MWG++IAPHGN+G V+AKF  NLPA+SIGKP+RIMLYPS I
Sbjct:    2 VKPVRLYSKAVNIGYKRSLKNQHPQQSRLKIEGVNSRDETAFYMGKRVAYVYKAPTEKRTATGAKSRYRVMWGKVIAPHGNSGVVKAKFRNNLPASSIGKPLRIMLYPSTI 112          
BLAST of Gcaud2204.t1 vs. uniprot
Match: A0A5J4YVY4_PORPP (60S ribosomal protein L35a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVY4_PORPP)

HSP 1 Score: 144 bits (362), Expect = 1.980e-42
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPS 109
            VRL+ KGV  GYKR  RNQH  Q+R+ I+GV  R D Q+YLGKR+AY+YKA+ LKK   G+ +K R +WG++IAPHGN+GHVRAKF KNLP T+IG PVR+MLYPS
Sbjct:    6 VRLYSKGVVQGYKRGIRNQHPAQTRLSIQGVCTRDDVQWYLGKRVAYIYKASALKKGTRGKETKIRVIWGKVIAPHGNSGHVRAKFAKNLPPTAIGGPVRVMLYPS 111          
BLAST of Gcaud2204.t1 vs. uniprot
Match: A0A1X6NKY7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKY7_PORUM)

HSP 1 Score: 141 bits (356), Expect = 1.000e-40
Identity = 64/108 (59.26%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            VRL+ KG+ +GYKR+ RNQ+  Q RI+++G+ D+KDT FY+GKR+AY+YKA T+KK+      +YR +WG+II  HGNNG VRAKF KNLP TSIG PVR+M+YPS++
Sbjct:   66 VRLYSKGLVMGYKRSLRNQYVNQVRIKVQGLDDKKDTDFYMGKRVAYIYKAKTVKKATPKTEGRYRVVWGKIIGAHGNNGCVRAKFRKNLPPTSIGGPVRVMMYPSRV 173          
BLAST of Gcaud2204.t1 vs. uniprot
Match: A0A7S0ZBM0_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBM0_9RHOD)

HSP 1 Score: 137 bits (346), Expect = 5.420e-40
Identity = 67/108 (62.04%), Postives = 82/108 (75.93%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            VRL+ KGV  GYKR   NQH  Q+RI ++G+  RKD QFYLGKR+AYVYK +  KK+  G+ SK R +WG+IIAPHGN+G V+AKF+ NLP  SIG PVR+MLYPS I
Sbjct:    6 VRLYSKGVVQGYKRGMHNQHPSQARIAVDGLHSRKDVQFYLGKRVAYVYKGSVEKKTVRGKSSKIRVIWGKIIAPHGNSGVVKAKFSSNLPPKSIGGPVRVMLYPSHI 113          
BLAST of Gcaud2204.t1 vs. uniprot
Match: M1UT32_CYAM1 (60S ribosomal protein L35A n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT32_CYAM1)

HSP 1 Score: 135 bits (341), Expect = 3.120e-39
Identity = 63/108 (58.33%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            VR++ KGV LGY+R++R Q+  Q+RIQIEGV+ R +T FY GKR+AYVYKA   + +  G +++YR +WGRIIAPHG++G VRAKF  NLP ++IGK VR+MLYPS++
Sbjct:    6 VRVYCKGVILGYRRSQRRQYPNQTRIQIEGVRTRDETTFYAGKRVAYVYKAKRARTTTRGRVTRYRCIWGRIIAPHGSSGCVRAKFATNLPPSAIGKAVRVMLYPSRV 113          
BLAST of Gcaud2204.t1 vs. uniprot
Match: M2VXN9_GALSU (60S ribosomal protein L35Ae isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXN9_GALSU)

HSP 1 Score: 134 bits (337), Expect = 1.310e-38
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 0
Query:    5 RLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            RL+ KGV LGYKR++RNQ+  Q+RI+I+GV+DR  T FY+GKR+AYVY+A   +KS  G+ +K R +WG++I PHGN+G VRAKF  NLP +S GK VR+MLYPS +
Sbjct:    8 RLYCKGVVLGYKRSQRNQYPNQTRIKIQGVEDRASTSFYIGKRVAYVYRAKRPRKSFRGKKTKIRVIWGKVIGPHGNSGVVRAKFRNNLPPSSFGKRVRVMLYPSNL 114          
BLAST of Gcaud2204.t1 vs. uniprot
Match: A0A7R9U9P7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9P7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.480e-37
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            VRL+VKGV LGYKR +RNQ+   S ++I+GV ++K+T FYLGKRIAY+YKA+T  K    E SK+R +WG++   HG+NG VR KF KNLP TSIG PVR+MLYPS+I
Sbjct:   10 VRLYVKGVVLGYKRGQRNQYNHTSLVKIQGVDEKKETTFYLGKRIAYIYKAHTPNK----EGSKFRVIWGKVCRAHGSNGVVRCKFRKNLPPTSIGAPVRVMLYPSQI 113          
BLAST of Gcaud2204.t1 vs. uniprot
Match: F0VQX2_NEOCL (60S ribosomal protein L35a n=17 Tax=Sarcocystidae TaxID=5809 RepID=F0VQX2_NEOCL)

HSP 1 Score: 130 bits (326), Expect = 5.820e-37
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    4 VRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAYVYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGKPVRIMLYPSKI 111
            VRL+V+G+ LGYKR++ NQ+   S +Q+EGV DRKDTQFYLGKR+AYVYKA T K+      SKYR +WGRI  PHGN G VRAKF  NLP +SI   VR+ LYPS I
Sbjct:   10 VRLYVRGIVLGYKRSKVNQYPSCSLLQLEGVNDRKDTQFYLGKRVAYVYKAKTEKQG-----SKYRVIWGRIRRPHGNGGIVRAKFRNNLPPSSIAGRVRVFLYPSNI 112          
The following BLAST results are available for this feature:
BLAST of Gcaud2204.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J374_9FLOR8.360e-6788.2960S ribosomal protein L35a-3 n=1 Tax=Gracilariopsi... [more]
R7Q341_CHOCR1.840e-5676.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D5AC22.860e-4463.0660S ribosomal protein L35a-like n=1 Tax=Mercenaria... [more]
A0A5J4YVY4_PORPP1.980e-4264.1560S ribosomal protein L35a n=1 Tax=Porphyridium pu... [more]
A0A1X6NKY7_PORUM1.000e-4059.26Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZBM0_9RHOD5.420e-4062.04Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M1UT32_CYAM13.120e-3958.3360S ribosomal protein L35A n=2 Tax=cellular organi... [more]
M2VXN9_GALSU1.310e-3858.8860S ribosomal protein L35Ae isoform 1 n=1 Tax=Gald... [more]
A0A7R9U9P7_9STRA1.480e-3761.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0VQX2_NEOCL5.820e-3762.0460S ribosomal protein L35a n=17 Tax=Sarcocystidae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 6..105
e-value: 2.8E-36
score: 123.6
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 2..111
IPR001780Ribosomal protein L35AHAMAPMF_00573Ribosomal_L35Aecoord: 8..105
score: 22.965807
IPR038661Ribosomal protein L35A superfamilyGENE3D2.40.10.190translation elongation factor selb, chain A, domain 4coord: 1..111
e-value: 6.4E-43
score: 147.1
NoneNo IPR availablePANTHERPTHR10902:SF0RIBOSOMAL PROTEIN L35Acoord: 2..111
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 6..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:69624..69959 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1Gcaud2204.t1Gracilaria caudata M_176_S67 malemRNANODE_19_length_78712_cov_4.326007 69624..69959 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MSQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAY
VYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGK
PVRIMLYPSKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001780Ribosomal_L35A
IPR038661L35A_sf
IPR009000Transl_B-barrel_sf