Gcaud2204.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2204.t1
Unique NameGcaud2204.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_19_length_78712_cov_4.326007contigNODE_19_length_78712_cov_4.326007:69624..69959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML304CT
Preferred nameRPL35A
PFAMsRibosomal_L35Ae
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC01160
KEGG koko:K01412,ko:K01952,ko:K02917,ko:K09377
KEGG ReactionR04463
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03010,map00230,map01100,map01110,map01130,map03010
KEGG ModuleM00048,M00177,M00179
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004518,GO:0004519,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009451,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0016787,GO:0016788,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022414,GO:0022613,GO:0022625,GO:0022626,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043021,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046872,GO:0046907,GO:0046914,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061458,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.34e-40
EggNOG OGsCOG2451@1|root,KOG0887@2759|Eukaryota
EC3.4.24.64,6.3.5.3
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01002,ko03000,ko03011,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2204Gcaud2204Gracilaria caudata M_176_S67 malegeneNODE_19_length_78712_cov_4.326007 69624..69959 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1.stop1Gcaud2204.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_19_length_78712_cov_4.326007 69624..69626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1.CDS1Gcaud2204.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_19_length_78712_cov_4.326007 69624..69959 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1.exon1Gcaud2204.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_19_length_78712_cov_4.326007 69624..69959 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1.start1Gcaud2204.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_19_length_78712_cov_4.326007 69957..69959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2204.t1Gcaud2204.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_19_length_78712_cov_4.326007 69624..69959 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=112bp
MSQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAY
VYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGK
PVRIMLYPSKI*
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spliced messenger RNA

>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:69624..69959- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAAGTCAGATTGCATGTCAAGGGCGTTCATCTGGGTTACAAGCG
CAACCGTCGCAACCAACATTGCGGACAATCGCGCATCCAAATTGAAGGTG
TCAAAGATCGAAAGGACACTCAGTTCTATCTCGGAAAGCGTATCGCGTAT
GTGTACAAGGCAAACACGCTCAAGAAGTCTCGAACGGGTGAATTGAGCAA
GTATCGTTTCATGTGGGGCCGAATCATCGCTCCGCACGGCAACAACGGTC
ACGTCAGGGCTAAGTTCACTAAAAACTTGCCTGCTACTTCAATCGGGAAG
CCTGTGCGCATCATGCTCTATCCAAGCAAGATTTGA
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protein sequence of Gcaud2204.t1

>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MSQVRLHVKGVHLGYKRNRRNQHCGQSRIQIEGVKDRKDTQFYLGKRIAY
VYKANTLKKSRTGELSKYRFMWGRIIAPHGNNGHVRAKFTKNLPATSIGK
PVRIMLYPSKI*
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mRNA from alignment at NODE_19_length_78712_cov_4.326007:69624..69959-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:69624..69959- (Gracilaria caudata M_176_S67 male)
ATGTCTCAAGTCAGATTGCATGTCAAGGGCGTTCATCTGGGTTACAAGCG
CAACCGTCGCAACCAACATTGCGGACAATCGCGCATCCAAATTGAAGGTG
TCAAAGATCGAAAGGACACTCAGTTCTATCTCGGAAAGCGTATCGCGTAT
GTGTACAAGGCAAACACGCTCAAGAAGTCTCGAACGGGTGAATTGAGCAA
GTATCGTTTCATGTGGGGCCGAATCATCGCTCCGCACGGCAACAACGGTC
ACGTCAGGGCTAAGTTCACTAAAAACTTGCCTGCTACTTCAATCGGGAAG
CCTGTGCGCATCATGCTCTATCCAAGCAAGATTTGA
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Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:69624..69959-

>Gcaud2204.t1 ID=Gcaud2204.t1|Name=Gcaud2204.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=336bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:69624..69959- (Gracilaria caudata M_176_S67 male)
ATGTCTCAAGTCAGATTGCATGTCAAGGGCGTTCATCTGGGTTACAAGCG
CAACCGTCGCAACCAACATTGCGGACAATCGCGCATCCAAATTGAAGGTG
TCAAAGATCGAAAGGACACTCAGTTCTATCTCGGAAAGCGTATCGCGTAT
GTGTACAAGGCAAACACGCTCAAGAAGTCTCGAACGGGTGAATTGAGCAA
GTATCGTTTCATGTGGGGCCGAATCATCGCTCCGCACGGCAACAACGGTC
ACGTCAGGGCTAAGTTCACTAAAAACTTGCCTGCTACTTCAATCGGGAAG
CCTGTGCGCATCATGCTCTATCCAAGCAAGATTTGA
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