Gcaud2058.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2058.t1
Unique NameGcaud2058.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length238
Homology
BLAST of Gcaud2058.t1 vs. uniprot
Match: A0A2V3J4R4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4R4_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 4.280e-10
Identity = 66/184 (35.87%), Postives = 93/184 (50.54%), Query Frame = 0
Query:    1 MTSNTVETEKYVEVDLPEHEHCLLEKVLIPRNARVVAFRG--SRSAGTDAQIKVVHTMSNKEDNVAKLLSK---GSIQKRLWRQIAKNRTTENENQRKRHKRQRLSEPPGARAHRLAKRRKWYAKKKKDKKLPD--------RKVSESTENSHFSNSGTQSSYDSPYNSLSTNDMSHTLGTESS 171
            M SN  E   YVE+ +P+     L KV +P NA V+        +   DA  +VVHT+S K+ NVAK  +     SI+K LWR+   NR  ENE  R R+++  L+E    R  RLAKRR  YA K  +  + +        ++   S  N+  S S +Q S DS   SL +N +S   G+ +S
Sbjct:    1 MASNE-EKRSYVEIMVPQSVQFPLNKVWLPGNAEVLVVNAVLPNNRNNDADPEVVHTVSEKQGNVAKPTASRLSASIRKTLWRERGNNRANENERNRSRYRKAVLNESQIERKSRLAKRRARYAHKHSNLDIDEQSEDNTWSKRSQSSAPNTESSKSSSQYSSDSEL-SLISNGVSELEGSVTS 182          
BLAST of Gcaud2058.t1 vs. uniprot
Match: A0A2V3IRZ8_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ8_9FLOR)

HSP 1 Score: 56.6 bits (135), Expect = 5.760e-6
Identity = 62/184 (33.70%), Postives = 90/184 (48.91%), Query Frame = 0
Query:    1 MTSNTVETEKYVEVDLPEHEHCLLEKVLIPRNARVVAFRG--SRSAGTDAQIKVVHTMSNKEDNVAKLLSK---GSIQKRLWRQIAKNRTTENENQRKRHKRQRLSEPPGARAHRLAKRRKWYAKKKKDKKLPD--------RKVSESTENSHFSNSGTQSSYDSPYNSLSTNDMSHTLGTESS 171
            M SN  E   YVE+ +P+     L KV +  NA V+        +   DA  ++VHT+S K+ NVAK  +     SI+K L R+    R  ENE  R R+++  L+E    R  RLAKRR  YA K  +  + +        ++   S  N+  S S +Q S DS   SL +N +S   G+ +S
Sbjct:    1 MASNE-EKRSYVEIMVPQSVQFPLNKVWLQGNAEVLVVNAVLPNNRNNDADPELVHTVSEKQGNVAKPTASRLSASIRKALCRERGNKRANENERNRSRYRKAVLNESQIERKSRLAKRRARYAHKHSNLDIDEQSEDNTWSKRSQSSAPNTESSKSSSQYSSDSEL-SLISNGVSELEGSVTS 182          
The following BLAST results are available for this feature:
BLAST of Gcaud2058.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4R4_9FLOR4.280e-1035.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IRZ8_9FLOR5.760e-633.70Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_787_length_17995_cov_4.546805contigNODE_787_length_17995_cov_4.546805:16..729 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1Gcaud2058.t1Gracilaria caudata M_176_S67 malemRNANODE_787_length_17995_cov_4.546805 16..729 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MTSNTVETEKYVEVDLPEHEHCLLEKVLIPRNARVVAFRGSRSAGTDAQI
KVVHTMSNKEDNVAKLLSKGSIQKRLWRQIAKNRTTENENQRKRHKRQRL
SEPPGARAHRLAKRRKWYAKKKKDKKLPDRKVSESTENSHFSNSGTQSSY
DSPYNSLSTNDMSHTLGTESSSVDAIDTRNQNSSPSVAQTESELQGGSLS
GSSNSFLYEIHEYIYSLKFYRHILCQSTKYRIQISKY*
back to top