Gcaud2058.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2058.t1
Unique NameGcaud2058.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_787_length_17995_cov_4.546805contigNODE_787_length_17995_cov_4.546805:16..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2058Gcaud2058Gracilaria caudata M_176_S67 malegeneNODE_787_length_17995_cov_4.546805 16..729 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1.start1Gcaud2058.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_787_length_17995_cov_4.546805 16..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1.CDS1Gcaud2058.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_787_length_17995_cov_4.546805 16..729 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1.exon1Gcaud2058.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_787_length_17995_cov_4.546805 16..729 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1.stop1Gcaud2058.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_787_length_17995_cov_4.546805 727..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2058.t1Gcaud2058.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_787_length_17995_cov_4.546805 16..729 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
MTSNTVETEKYVEVDLPEHEHCLLEKVLIPRNARVVAFRGSRSAGTDAQI
KVVHTMSNKEDNVAKLLSKGSIQKRLWRQIAKNRTTENENQRKRHKRQRL
SEPPGARAHRLAKRRKWYAKKKKDKKLPDRKVSESTENSHFSNSGTQSSY
DSPYNSLSTNDMSHTLGTESSSVDAIDTRNQNSSPSVAQTESELQGGSLS
GSSNSFLYEIHEYIYSLKFYRHILCQSTKYRIQISKY*
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spliced messenger RNA

>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:16..729+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAAACACCGTTGAGACTGAAAAGTACGTTGAAGTGGATCTTCC
GGAACATGAGCATTGTCTTTTGGAAAAGGTTCTCATACCGAGGAATGCTA
GAGTGGTTGCTTTTCGCGGATCGAGATCAGCCGGTACAGACGCGCAGATT
AAGGTCGTCCACACAATGTCCAACAAAGAAGACAATGTAGCCAAGTTGCT
TTCAAAGGGATCAATTCAGAAACGGTTGTGGCGCCAAATTGCGAAAAACC
GCACTACAGAGAATGAGAACCAAAGAAAGAGGCACAAGAGGCAGCGGTTG
TCCGAACCGCCAGGTGCAAGGGCTCATCGACTTGCAAAACGCCGAAAATG
GTACGCAAAAAAGAAAAAGGACAAGAAATTGCCCGACAGGAAGGTTTCTG
AGTCCACTGAAAACAGTCATTTTTCAAATTCTGGGACGCAAAGCTCGTAT
GATTCTCCTTACAACTCCCTATCTACAAACGATATGAGTCACACTCTGGG
TACAGAATCAAGCTCCGTAGATGCCATAGACACTCGTAATCAGAATTCTT
CACCTTCCGTAGCCCAAACAGAATCCGAGTTGCAGGGGGGATCGTTGAGT
GGCTCGAGCAATTCGTTTCTTTACGAGATTCATGAGTACATTTATTCCCT
CAAATTTTACCGCCACATATTGTGCCAGTCAACGAAATACCGCATTCAAA
TTTCAAAGTACTAA
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protein sequence of Gcaud2058.t1

>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MTSNTVETEKYVEVDLPEHEHCLLEKVLIPRNARVVAFRGSRSAGTDAQI
KVVHTMSNKEDNVAKLLSKGSIQKRLWRQIAKNRTTENENQRKRHKRQRL
SEPPGARAHRLAKRRKWYAKKKKDKKLPDRKVSESTENSHFSNSGTQSSY
DSPYNSLSTNDMSHTLGTESSSVDAIDTRNQNSSPSVAQTESELQGGSLS
GSSNSFLYEIHEYIYSLKFYRHILCQSTKYRIQISKY*
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mRNA from alignment at NODE_787_length_17995_cov_4.546805:16..729+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:16..729+ (Gracilaria caudata M_176_S67 male)
ATGACTTCAAACACCGTTGAGACTGAAAAGTACGTTGAAGTGGATCTTCC
GGAACATGAGCATTGTCTTTTGGAAAAGGTTCTCATACCGAGGAATGCTA
GAGTGGTTGCTTTTCGCGGATCGAGATCAGCCGGTACAGACGCGCAGATT
AAGGTCGTCCACACAATGTCCAACAAAGAAGACAATGTAGCCAAGTTGCT
TTCAAAGGGATCAATTCAGAAACGGTTGTGGCGCCAAATTGCGAAAAACC
GCACTACAGAGAATGAGAACCAAAGAAAGAGGCACAAGAGGCAGCGGTTG
TCCGAACCGCCAGGTGCAAGGGCTCATCGACTTGCAAAACGCCGAAAATG
GTACGCAAAAAAGAAAAAGGACAAGAAATTGCCCGACAGGAAGGTTTCTG
AGTCCACTGAAAACAGTCATTTTTCAAATTCTGGGACGCAAAGCTCGTAT
GATTCTCCTTACAACTCCCTATCTACAAACGATATGAGTCACACTCTGGG
TACAGAATCAAGCTCCGTAGATGCCATAGACACTCGTAATCAGAATTCTT
CACCTTCCGTAGCCCAAACAGAATCCGAGTTGCAGGGGGGATCGTTGAGT
GGCTCGAGCAATTCGTTTCTTTACGAGATTCATGAGTACATTTATTCCCT
CAAATTTTACCGCCACATATTGTGCCAGTCAACGAAATACCGCATTCAAA
TTTCAAAGTACTAA
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Coding sequence (CDS) from alignment at NODE_787_length_17995_cov_4.546805:16..729+

>Gcaud2058.t1 ID=Gcaud2058.t1|Name=Gcaud2058.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_787_length_17995_cov_4.546805:16..729+ (Gracilaria caudata M_176_S67 male)
ATGACTTCAAACACCGTTGAGACTGAAAAGTACGTTGAAGTGGATCTTCC
GGAACATGAGCATTGTCTTTTGGAAAAGGTTCTCATACCGAGGAATGCTA
GAGTGGTTGCTTTTCGCGGATCGAGATCAGCCGGTACAGACGCGCAGATT
AAGGTCGTCCACACAATGTCCAACAAAGAAGACAATGTAGCCAAGTTGCT
TTCAAAGGGATCAATTCAGAAACGGTTGTGGCGCCAAATTGCGAAAAACC
GCACTACAGAGAATGAGAACCAAAGAAAGAGGCACAAGAGGCAGCGGTTG
TCCGAACCGCCAGGTGCAAGGGCTCATCGACTTGCAAAACGCCGAAAATG
GTACGCAAAAAAGAAAAAGGACAAGAAATTGCCCGACAGGAAGGTTTCTG
AGTCCACTGAAAACAGTCATTTTTCAAATTCTGGGACGCAAAGCTCGTAT
GATTCTCCTTACAACTCCCTATCTACAAACGATATGAGTCACACTCTGGG
TACAGAATCAAGCTCCGTAGATGCCATAGACACTCGTAATCAGAATTCTT
CACCTTCCGTAGCCCAAACAGAATCCGAGTTGCAGGGGGGATCGTTGAGT
GGCTCGAGCAATTCGTTTCTTTACGAGATTCATGAGTACATTTATTCCCT
CAAATTTTACCGCCACATATTGTGCCAGTCAACGAAATACCGCATTCAAA
TTTCAAAGTACTAA
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