Gcaud1896.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1896.t1
Unique NameGcaud1896.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length487
Homology
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A2V3IHJ5_9FLOR (Squalene synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHJ5_9FLOR)

HSP 1 Score: 789 bits (2037), Expect = 2.710e-285
Identity = 389/486 (80.04%), Postives = 430/486 (88.48%), Query Frame = 0
Query:    1 MAVLKEAMAAGSLKELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQKLQREEVRRMQQSNRDARRREQVVILEE 486
            M VLK+AMAAGSL ELIAL+RYKRKAAAAN LMT+ALD +W YAY AL AVSRSFALVIMEL TE+RHPVCIFYLVLR LDTIEDDTS DP +R +LC  FW+ L+         PWSSSQFGTG EK LC+ F SVLRC+ SLH KYQ II DITRRMG GMAEHI+DV+C++++DYDLYCHYVAGLVGYGLSDIFAQS +ED SF+ER DLSNSMGLFLQKTNI+RDYLEDINEGRTFWP+EIWSNYGN LSDF+D ANRKFAL  LNHMVTDA+ HVP C+EYMSRVRT+++FKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTA LVLRTK+MD+VYKVF+DYARTI   +E HDPNA++TR  LN ++DICVPHVP+TPDL+IPNVLSIILFC LSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLA+AALFLVCIYMFGFFLLPYMQKLQREEVRRMQ S R ARR+E +V LE+
Sbjct:    1 MGVLKDAMAAGSLSELIALVRYKRKAAAANALMTAALDHNWKYAYTALCAVSRSFALVIMELSTEMRHPVCIFYLVLRALDTIEDDTSADPDLRQQLCSNFWKQLDVNPALPDAQPWSSSQFGTGAEKHLCQNFPSVLRCYHSLHVKYQRIIRDITRRMGNGMAEHIRDVACDSIRDYDLYCHYVAGLVGYGLSDIFAQSALEDKSFAERKDLSNSMGLFLQKTNIVRDYLEDINEGRTFWPQEIWSNYGNSLSDFKDPANRKFALPLLNHMVTDALRHVPHCLEYMSRVRTNDIFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTAQLVLRTKNMDYVYKVFFDYARTIMTAVESHDPNAEKTRQLLNEVMDICVPHVPSTPDLIIPNVLSIILFCVLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAVAALFLVCIYMFGFFLLPYMQKLQREEVRRMQTSARLARRQENIVSLED 486          
BLAST of Gcaud1896.t1 vs. uniprot
Match: R7Q3V5_CHOCR (Squalene synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3V5_CHOCR)

HSP 1 Score: 672 bits (1734), Expect = 3.340e-239
Identity = 333/485 (68.66%), Postives = 397/485 (81.86%), Query Frame = 0
Query:    1 MAVLKEAMAAG-SLKELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQKLQREEVRRMQQSNRDARRREQVVIL 484
            M VLKE +AA  +  E++AL+RYKRKA  A   MT +LD DW YAY  LS VSRSF+LVIMEL   LRHP+C+FYLVLR LDT+EDDTS+ P +R ++C  F   LE    +E  + WSS+ FG G EK+L   F  VLRC+ ++   ++T+I DIT+RMG GMAEHI+D SC++  DYD YCHYVAGLVG GLSDIFA SG E+ +FS+RT+LSNSMGLFLQKTNIIRDYLEDINEGRTFWP+EIW  YGN L+DF+D ANRKF+LA LNHM+TDA+ H+PDCIEYMS V+T +VF FVA+PQVMAIATLAE YNNGKVFEGVVKIRRSKTA LVL TK+MD +YKVF+DYA T+ + +EPHDPNA++TR  LN ++D+C+PHVPA+PDLVIPNV+SIILFCGLSSYVLKRRQ+HFDGAVFTWRSAGGIME  DM+AIAALFLVCIYMFGFFLLPYM KLQ++EVRRM   +R +  R Q V++
Sbjct:    1 MGVLKEVIAARYNPAEVLALLRYKRKAVKAREQMTLSLDPDWVYAYSNLSKVSRSFSLVIMELRPVLRHPICVFYLVLRALDTVEDDTSIHPDIRRDICTNFHNFLEP---EEGENAWSSNSFGDGAEKDLLIHFPIVLRCYNTIDPSFRTVIKDITKRMGAGMAEHIEDTSCDSTADYDQYCHYVAGLVGLGLSDIFAISGCEEPAFSDRTELSNSMGLFLQKTNIIRDYLEDINEGRTFWPREIWVQYGNCLTDFKDPANRKFSLAVLNHMITDALRHMPDCIEYMSHVQTQDVFNFVAVPQVMAIATLAELYNNGKVFEGVVKIRRSKTAQLVLSTKNMDALYKVFFDYAVTMLKNVEPHDPNAEKTRQILNKVIDVCLPHVPASPDLVIPNVISIILFCGLSSYVLKRRQDHFDGAVFTWRSAGGIMEFSDMVAIAALFLVCIYMFGFFLLPYMSKLQQDEVRRMYTESRTSNPRPQRVVM 482          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A1X6P6R7_PORUM (Squalene synthase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6R7_PORUM)

HSP 1 Score: 470 bits (1209), Expect = 5.670e-159
Identity = 245/444 (55.18%), Postives = 304/444 (68.47%), Query Frame = 0
Query:   15 ELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSE--RTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPY 456
            EL+AL+R++ +  AA       +DD W + Y  L  VSRSFALVIMELE ELR PV IFYLVLR LDT+EDDT+V+  VR  LC  F   L           W++  FG G EKEL E+F +V  CF  L  +YQ +I DITR MG GMAEH+ D +C T+ DYD YCHYVAGLVG GL+ +FA SG+E  + ++  R  L+NSMGLFLQKTNIIRDYLED+ +GRTFWP+EIWS Y + L  F     RK AL+ LN MVTDA+ HVPDC+EYMS +R+  VF FVAIPQVMA+ATLAE Y N  VF GVVK+RR KTA L+ R   ++ V+ +F+  A  +   + P DP+ + TR  L  I+   +PHVPATPDL +PN LS+I F  LS+Y+L+RR EH DG  F+WR  GGI EP DMLA AALFLV +++F FF L +
Sbjct:   21 ELLALLRFRARGKAAIAAALGGMDDRWRWCYGILGQVSRSFALVIMELEAELRDPVAIFYLVLRALDTVEDDTAVEAVVRRALCIDFHNKLAP-----EAGGWTTDGFGKGAEKELLERFDTVHSCFSDLKPEYQRVIADITREMGFGMAEHMDDTACVTIADYDRYCHYVAGLVGLGLTRMFAVSGLESPALADPRRDHLANSMGLFLQKTNIIRDYLEDLTDGRTFWPEEIWSVYADRLGAFAAPEQRKAALSCLNAMVTDALRHVPDCLEYMSAIRSPTVFHFVAIPQVMAMATLAEVYANPGVFAGVVKLRRGKTAVLIARATSVESVHALFFGSAVGMRAALAPADPSVEETRSALERIIRRSLPHVPATPDLTVPNRLSLIAFVTLSTYLLRRRAEHNDGTSFSWRR-GGIPEPLDMLAAAALFLVMMWLFSFFGLQF 458          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A7S1THX1_9RHOD (Squalene synthase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THX1_9RHOD)

HSP 1 Score: 457 bits (1176), Expect = 9.430e-155
Identity = 238/453 (52.54%), Postives = 307/453 (67.77%), Query Frame = 0
Query:   15 ELIALIRYKRKAAAANLLM-----TSALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQKLQR 462
            EL+A+++YK KA  A                  + Y  L  VSRSFALVIMEL  +LR PVCIFYLVLR LDT+EDDT+VDP VR  L   F++ ++        + W+   FGT     L + F  V+ CF++L  KYQ +I DITR MG GMA+H++D +C T+ DYDLYCHYVAGLVG GL+ +F +SG ED     R DLSNSMGLFLQKTNIIRDYLED+NE RTFWP EIWS +GN+L DF++   R  A+A LN MVTDA+ HVPDCIEYM R+R ++VF FVAIPQVMAI TLAEC+NN  VFEGVVK+RR  TA LVLRTK M  ++++++D+A  + +K+EP DP+A  TR  LN ++++ +PHVP TPDL +PN  ++++F  LS Y+L RR    DG     R  G +    D+ A++ALFL   Y+  FF L Y++  +R
Sbjct:   13 ELVAMVQYKLKARQAEKETKRPGRAPVRPGSREFCYGILKDVSRSFALVIMELAEDLRDPVCIFYLVLRGLDTVEDDTAVDPDVRVPLLREFYKKIDQ-------EGWTLDGFGTNHYLRLLQGFDRVIDCFRALEPKYQAVIRDITRMMGAGMADHVRDEACVTIADYDLYCHYVAGLVGVGLTRMFVESGNEDPYLLNREDLSNSMGLFLQKTNIIRDYLEDMNEARTFWPSEIWSRFGNELGDFQNPEKRDDAVACLNAMVTDALRHVPDCIEYMVRIRNEHVFNFVAIPQVMAIGTLAECFNNPMVFEGVVKLRRGLTAKLVLRTKAMPALFRLYFDFANVMLKKLEPSDPSASATRTSLNQVVELSLPHVPGTPDLTVPNGAAVVVFAVLSFYLLGRRGAG-DGIEVGSRRTGQLPSLGDIAAMSALFLAISYLLTFFGLQYVKPTRR 457          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A7S0ZHI8_9RHOD (Squalene synthase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHI8_9RHOD)

HSP 1 Score: 424 bits (1091), Expect = 7.640e-142
Identity = 234/452 (51.77%), Postives = 305/452 (67.48%), Query Frame = 0
Query:   15 ELIALIRYKRKAAAA---NLLMTSALDD---DWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG--NDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQ 458
            E +A++R+K KA AA   ++ + SA D     W + Y+ L  VSRSFA+VIMEL+ ELR PVCIFYLVLR LDT+EDDT+ D   R +LC  F++ LE          WS+S++G   EKEL E+F++VL CF SL  KY+ +I DITRRMG GMAEHI D  C +V DYD YC YVAGLVG GLS +F  SG ED  F E   LS SMGLFLQK NIIRDYLEDI++ RTFWP+EIWS +    +LS F+    R  A+  LN M+TDA+ HVPDCI+YMSR++   VF FVAIPQVMAI TLAEC+NN  VFEG+VK+RR  TA LV++TK M  ++K+++D+A  + +K +  D + + T  RLN I D+ +P++ ++ DL   N L  +L   LS Y++ RR++ FD  V+    AG + E +DM A+ ALFL   YM  FF L +M+
Sbjct:   16 EALAMVRFKLKARAAYAASVALRSASDPMTAKWEFCYEYLGKVSRSFAMVIMELDDELRDPVCIFYLVLRALDTVEDDTAKDSQARIDLCTQFYKKLE-------LPEWSTSEYGYAHEKELLEQFSAVLACFGSLPEKYRKVISDITRRMGKGMAEHIHDKECISVADYDQYCFYVAGLVGIGLSSMFVASGREDRFFVENDHLSISMGLFLQKVNIIRDYLEDIHDARTFWPREIWSEFSPTGELSAFKHPEYRMEAVECLNAMITDALRHVPDCIQYMSRIQNSFVFNFVAIPQVMAIGTLAECFNNPLVFEGIVKLRRGLTAKLVMKTKTMSALFKLYFDFAMNMKKKCQVADASYELTAMRLNSICDLSLPYIVSSHDLQASNWLFALLLVFLSVYLVNRRRD-FD--VYGIAQAG-LPEIQDMAALGALFLCLAYMLVFFGLQFMR 456          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A5J4YXY5_PORPP (Squalene synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXY5_PORPP)

HSP 1 Score: 422 bits (1086), Expect = 8.100e-141
Identity = 235/469 (50.11%), Postives = 314/469 (66.95%), Query Frame = 0
Query:    4 LKEAMAAG-SLKELIALIRYKRKAAAANLLMTS---------ALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCD-PWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG--NDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQE-HFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQ 458
            +K+ MA+G  + E++A++R+K KA+ A     +         A    W + Y+ L  VSRSFALVIMEL+ ELR PVCIFYLVLR LDTIEDDTS D   R  LC  F+  L+   +    +  + SS+FG   EK L EKF  V+ CF+SL  KYQ++I DIT++MG GMAEHI D  C TV++YD YC YVAGLVG GLS++F  SG E   F++   LS SMGLFLQKTNIIRDYLEDI++ RTFWPKEIWS +     L+DF+D  NR  A+  LN MV DA+ HVPDCIEYMS+V+ ++VF FVAIPQVMAI T++EC NN  VFEGVVK+R+  TA L+++TK M  +  +++D+A  + +K+E  DP+ +    RL+ + D+ V ++  TP+L++PN +  IL   LS Y+++RR+E   +G        GG+   +DMLA+A LFL   YM GFF L +M+
Sbjct:    5 MKDVMASGWRVDEVLAMLRFKVKASRAGTAAQARRHAGAADAAAAAHWDFCYEYLKLVSRSFALVIMELDDELRDPVCIFYLVLRALDTIEDDTSHDAERRIALCKQFYTFLDVASEQNVAEVAFRSSEFGKLHEKVLLEKFPVVIECFRSLAPKYQSVIRDITQKMGAGMAEHIHDKECITVEEYDTYCFYVAGLVGLGLSEMFVVSGRESDFFTKNEHLSISMGLFLQKTNIIRDYLEDIHDARTFWPKEIWSAHAPNQSLADFKDPDNRVHAVECLNAMVADALRHVPDCIEYMSQVQNEHVFNFVAIPQVMAIGTISECLNNSLVFEGVVKLRKGLTAKLIMQTKSMPALSSLYFDFACVMQKKLESSDPSYELVCDRLSQVKDLSVAYMRTTPNLMVPNWVVAILSVLLSYYLVQRRRELDLEGLPH-----GGLPSGQDMLAMAGLFLGVAYMLGFFGLQFMK 468          
BLAST of Gcaud1896.t1 vs. uniprot
Match: M1UQ86_CYAM1 (Squalene synthase n=2 Tax=cellular organisms TaxID=131567 RepID=M1UQ86_CYAM1)

HSP 1 Score: 394 bits (1011), Expect = 1.830e-129
Identity = 235/485 (48.45%), Postives = 298/485 (61.44%), Query Frame = 0
Query:   15 ELIALIRYKRKAAAANLLMTSALDD---------DWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASF---SERTD-LSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGND--LSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRT----RHRLNCILDI----------CVPHVPA-TPDLVIP--NVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSA-GGIMEPRDMLAIAALFLVCIYMFGFFLLPYMQKLQREEVR 466
            EL AL++Y+ K+  A  +    L           DW + Y+ L  VSRSFALVIMEL++ELR PVCIFYL+LR LDTIEDDTSVD  +R  LC   + +L+        + ++    G+  E++L E+F  VL CF  L   Y+ II DITR MG GMA+HI   +C T+ DYDLYCHYVAGLVG GLS +FA SG E       S+  D L+NSMGLFLQKTNIIRDYLED  +GRTFWP+EIW  +G D  L+D     +R+ A+  LN MVTDA+ HVPDC++YMS+VR+++VF FVAIPQVMAIATLA CYNN  VF   VK+RR +TA LVLR +DM  V  +F +Y   I   ++P DP+   T     H L     I           V  VPA  P L +   N ++++LF  LS YVL RR++  DG    WR+A GGI    D+ AIA LF V  Y+ G F L Y+      E++
Sbjct:   13 ELWALVKYREKSRKAVNVQEEGLRQRVGDAERIADWRFCYEYLRRVSRSFALVIMELDSELRDPVCIFYLILRALDTIEDDTSVDATLRMRLCQELYTHLQG-------NSYAVHDIGSADERKLLEEFPRVLGCFHELKPAYREIITDITRCMGDGMAQHIHHKACATIADYDLYCHYVAGLVGIGLSAMFAASGYESREVFVESKLADALANSMGLFLQKTNIIRDYLEDQRDGRTFWPQEIWGRFGKDMELADLARPEHRRVAVECLNAMVTDALRHVPDCLQYMSQVRSESVFYFVAIPQVMAIATLALCYNNADVFVRRVKLRRGQTAKLVLRARDMPAVLTIFTEYCEAIASSVDPCDPSYAETVAAVEHALTVAARIRDELIYRPMATVYRVPAYRPPLGLKYANRIAVLLFIILSLYVLYRRKQQ-DGGGLGWRAAFGGIPSLGDLAAIALLFAVLSYLLGVFGLQYVSLAPPNEIK 489          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A7J7ICJ5_9RHOD (Squalene synthase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ICJ5_9RHOD)

HSP 1 Score: 387 bits (994), Expect = 6.450e-127
Identity = 236/476 (49.58%), Postives = 288/476 (60.50%), Query Frame = 0
Query:   15 ELIALIRYKRKAAAANLLMTSALDD---------DWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNL--ESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASF---SERTD-LSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGN--DLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRT----RHRLNCILDI------C------VPHVPATPDLVIPNVLSIILFCGLSSYVLKRRQEHFDGAVFTWRSA-GGIMEPRDMLAIAALFLVCIYMFGFFLLPY 456
            E++AL++YK K+  A      AL           DW + Y  L  VSRSFALVIMEL++ LR PVC+FYLVLR LDTIEDDT++D  +R  LC   + +L   +YV             G   E+ L E+   V  CF+ L   YQ II DITRRMG GMA+HI   +CETV DYDLYCHYVAGLVG GLS +FA SG E       S+  D L+NSMGLFLQKTNIIRD+LED  EGRTFWP+EIWS +G   +L       NR+ A+  LN M+TDA+ HVPDC+ YMS+VR+ +VF FVAIPQVMAIATLA CYNN +VFE  VK+RR +TA LVLRT+DM  V  +F +    I    +P DP+   T     H L+    I      C       P   A  DL   N +++ILF  LS YVL RR++  DG    WR+A GGI    D+ AIA LF V  Y+ G F L Y
Sbjct:   13 EVVALVQYKHKSRKAAYEQERALRRRVCDTKRVCDWRFCYDYLQRVSRSFALVIMELDSHLRDPVCVFYLVLRALDTIEDDTNLDATLRMRLCREMYTHLGETAYVLHG---------IGEADERALLEQLPRVFGCFRELDPAYQEIISDITRRMGDGMAQHIHQCACETVADYDLYCHYVAGLVGIGLSAMFAASGHESREVFVESKLADTLANSMGLFLQKTNIIRDFLEDHTEGRTFWPREIWSQFGKGMELGALALPENRRAAVECLNAMITDALRHVPDCLLYMSQVRSKSVFYFVAIPQVMAIATLALCYNNPEVFERRVKLRRGQTAKLVLRTRDMSAVLSIFRERCEEIASSADPCDPSYAETVAAVEHALSVTTQIGNDLVFCPVGSQRAPAYRAPLDLKYANRIAVILFIVLSLYVLYRRKQQ-DGGGLGWRAAFGGIPSLGDLAAIALLFAVLSYLLGVFGLQY 478          
BLAST of Gcaud1896.t1 vs. uniprot
Match: A0A814H994_ADIRI (Squalene synthase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814H994_ADIRI)

HSP 1 Score: 335 bits (859), Expect = 1.230e-107
Identity = 176/346 (50.87%), Postives = 230/346 (66.47%), Query Frame = 0
Query:   39 DDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKE-LCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDV-SCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNAD--RTRHRLNCILDIC 380
            +D  + Y  L+ VSRSFA VI EL +EL+  +CIFYLVLR LD++EDD +     +  L   F + L       S D W+    G   + + L E F  V+R FKSL  KYQ +II+ITRRMGCGMA+++  + S ET   Y+LYCHYVAGLVGYGLS+IFA+SG+EDA      +LSNSMGLFLQKTNIIRDYLED+  GRT+WP+EIW NY NDLSDF    N K +L  LNHMV D++SHVP  I+Y++R++   +FKF AIPQVMA+ATLA+ Y+N KVF  V+KIR+  T  L+L   ++   +  FY +   I  KI PH+ N +  + +  +  I D+C
Sbjct:   81 NDIDFCYATLNKVSRSFAFVIQELPSELKDAICIFYLVLRGLDSVEDDMNYPDEKKIILLREFHKKL-------SIDNWTIKNVGDTKDYQILLEHFDKVIRVFKSLDIKYQLVIIEITRRMGCGMADYVGKIGSIETTSSYNLYCHYVAGLVGYGLSEIFAKSGLEDADLHLNEELSNSMGLFLQKTNIIRDYLEDLQAGRTWWPREIWQNYANDLSDFSHHPNAKQSLECLNHMVMDSLSHVPHIIQYLNRLQNSRIFKFCAIPQVMAMATLAQLYSNPKVFTSVIKIRKGLTCKLMLNCSNVSQTHSWFYLFIEKIQSKI-PHENNTNVQQMKTLVQQIKDLC 418          
BLAST of Gcaud1896.t1 vs. uniprot
Match: O22106_MAIZE (Squalene synthase n=18 Tax=PACMAD clade TaxID=147370 RepID=O22106_MAIZE)

HSP 1 Score: 331 bits (848), Expect = 3.030e-106
Identity = 182/370 (49.19%), Postives = 234/370 (63.24%), Query Frame = 0
Query:   14 KELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSAVSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYTFWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQTIIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQSGVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINE---GRTFWPKEIWSNYGNDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVAIPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYDYARTITQKIEPHDPNADRTRHRLNCILDIC 380
            +E++AL+  K + AA  +      ++ W++AY  L  VSRSFALVI +L  ELR+ VCIFYLVLR LDT+EDDTS+   V+  +   F++++ +     SC        GT   K L +KF  V   F  L   YQ  I ++TRRMG GMA+ I     ETV DYD YCHYVAGLVGYGLS +F  +G ED +      LSNSMGLFLQKTNIIRDYLEDINE    R FWP+EIWS Y + L DF+   N K A+  LN+MVTDA+ H  +C++YMS ++   +F+F AIPQ+MAI T A CYNN  VF GVVK+RR  TA ++  T  M  VY  FY+++  I  KI+  DPNA  T+ R++ I   C
Sbjct:    8 EEVLALV--KLRVAAGQIKRQIPPEEHWAFAYSMLQKVSRSFALVIQQLGPELRNAVCIFYLVLRALDTVEDDTSIPTEVKVPILQEFYRHIYNRDWHYSC--------GTNHYKMLMDKFRHVSTAFLELGEGYQKAIEEVTRRMGAGMAKFICK-EVETVDDYDEYCHYVAGLVGYGLSRLFYAAGTEDLALDS---LSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYADKLEDFKYEENSKKAVQCLNNMVTDALIHAEECLQYMSALKDPAIFRFCAIPQIMAIGTCALCYNNVHVFRGVVKMRRGLTARIIDETNSMTDVYTAFYEFSSLIESKIDDSDPNAALTQRRVDSIKQTC 363          
The following BLAST results are available for this feature:
BLAST of Gcaud1896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHJ5_9FLOR2.710e-28580.04Squalene synthase n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q3V5_CHOCR3.340e-23968.66Squalene synthase n=1 Tax=Chondrus crispus TaxID=2... [more]
A0A1X6P6R7_PORUM5.670e-15955.18Squalene synthase n=1 Tax=Porphyra umbilicalis Tax... [more]
A0A7S1THX1_9RHOD9.430e-15552.54Squalene synthase n=1 Tax=Compsopogon caeruleus Ta... [more]
A0A7S0ZHI8_9RHOD7.640e-14251.77Squalene synthase n=1 Tax=Timspurckia oligopyrenoi... [more]
A0A5J4YXY5_PORPP8.100e-14150.11Squalene synthase n=1 Tax=Porphyridium purpureum T... [more]
M1UQ86_CYAM11.830e-12948.45Squalene synthase n=2 Tax=cellular organisms TaxID... [more]
A0A7J7ICJ5_9RHOD6.450e-12749.58Squalene synthase n=1 Tax=Cyanidiococcus yangmings... [more]
A0A814H994_ADIRI1.230e-10750.87Squalene synthase n=2 Tax=Adineta ricciae TaxID=24... [more]
O22106_MAIZE3.030e-10649.19Squalene synthase n=18 Tax=PACMAD clade TaxID=1473... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002060Squalene/phytoene synthasePFAMPF00494SQS_PSYcoord: 49..328
e-value: 2.1E-43
score: 148.7
IPR002060Squalene/phytoene synthaseSFLDSFLDG01018Squalene/Phytoene_Synthase_Licoord: 36..338
e-value: 0.0
score: 224.5
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10Farnesyl Diphosphate Synthasecoord: 38..381
e-value: 4.7E-110
score: 369.9
IPR008949Isoprenoid synthase domain superfamilySUPERFAMILY48576Terpenoid synthasescoord: 39..378
IPR006449Squalene synthase-likeTIGRFAMTIGR01559TIGR01559coord: 40..377
e-value: 3.7E-128
score: 425.4
NoneNo IPR availableSFLDSFLDS00005Isoprenoid_Synthase_Type_Icoord: 36..338
e-value: 0.0
score: 224.5
NoneNo IPR availablePANTHERPTHR11626:SF2SQUALENE SYNTHASEcoord: 12..415
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 435..457
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 390..409
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..389
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 410..434
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 458..486
NoneNo IPR availableTMHMMTMhelixcoord: 435..457
IPR044844Trans-isoprenyl diphosphate synthases, eukaryotic-typePANTHERPTHR11626FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASEcoord: 12..415
IPR019845Squalene/phytoene synthase, conserved sitePROSITEPS01045SQUALEN_PHYTOEN_SYN_2coord: 217..242
IPR019845Squalene/phytoene synthase, conserved sitePROSITEPS01044SQUALEN_PHYTOEN_SYN_1coord: 181..196
IPR033904Trans-isoprenyl diphosphate synthases, head-to-headCDDcd00683Trans_IPPS_HHcoord: 42..332
e-value: 1.80269E-69
score: 220.569

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_807_length_17687_cov_4.345135contigNODE_807_length_17687_cov_4.345135:5409..6869 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1Gcaud1896.t1Gracilaria caudata M_176_S67 malemRNANODE_807_length_17687_cov_4.345135 5409..6869 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MAVLKEAMAAGSLKELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSA
VSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYT
FWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQT
IIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQS
GVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG
NDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVA
IPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYD
YARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIIL
FCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFG
FFLLPYMQKLQREEVRRMQQSNRDARRREQVVILEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002060Squ/phyt_synthse
IPR008949Isoprenoid_synthase_dom_sf
IPR006449Squal_synth-like
IPR044844Trans_IPPS_euk-type
IPR019845Squalene/phytoene_synthase_CS
IPR033904Trans_IPPS_HH