Gcaud1896.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1896.t1
Unique NameGcaud1896.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_807_length_17687_cov_4.345135contigNODE_807_length_17687_cov_4.345135:5409..6869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG178CT
Preferred nameFDFT1
PFAMsSQS_PSY
Max annot lvl2759|Eukaryota
KEGG rclassRC00362,RC00796,RC02839
KEGG koko:K00801
KEGG ReactionR00702,R02872,R06223
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
GOsGO:0003674,GO:0003824,GO:0004310,GO:0004311,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0019867,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0051996,GO:0062012,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090181,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue6.35e-130
EggNOG OGsCOG1562@1|root,KOG1459@2759|Eukaryota
EC2.5.1.21
Descriptionfarnesyl-diphosphate farnesyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1896Gcaud1896Gracilaria caudata M_176_S67 malegeneNODE_807_length_17687_cov_4.345135 5409..6869 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1.stop1Gcaud1896.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_807_length_17687_cov_4.345135 5409..5411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1.CDS1Gcaud1896.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_807_length_17687_cov_4.345135 5409..6869 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1.exon1Gcaud1896.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_807_length_17687_cov_4.345135 5409..6869 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1.start1Gcaud1896.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_807_length_17687_cov_4.345135 6867..6869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1896.t1Gcaud1896.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_807_length_17687_cov_4.345135 5409..6869 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=487bp
MAVLKEAMAAGSLKELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSA
VSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYT
FWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQT
IIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQS
GVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG
NDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVA
IPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYD
YARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIIL
FCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFG
FFLLPYMQKLQREEVRRMQQSNRDARRREQVVILEE*
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spliced messenger RNA

>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:5409..6869- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTTCTCAAGGAGGCAATGGCTGCCGGCTCCCTCAAAGAGTTGAT
CGCGCTCATACGTTACAAGCGCAAAGCTGCCGCAGCCAATTTGCTGATGA
CTTCCGCCCTCGACGATGATTGGAGTTATGCTTACAAAGCCCTCAGCGCG
GTGTCTCGCTCGTTTGCTCTCGTTATCATGGAGCTTGAAACCGAGCTTCG
TCACCCAGTGTGCATCTTTTATCTCGTTCTGCGTACCCTTGATACTATTG
AGGATGATACTTCCGTAGACCCCGCCGTCCGTCACGAATTGTGTTACACC
TTTTGGCAGAACCTTGAATCCTATGTCAAAGACGAATCGTGCGACCCATG
GTCATCCTCCCAATTTGGTACAGGAGTCGAGAAGGAACTCTGCGAAAAAT
TCGCGTCCGTATTGCGTTGCTTCAAGTCACTCCACACCAAGTACCAGACA
ATTATTATAGATATTACCCGTCGAATGGGTTGTGGCATGGCTGAGCACAT
CCAAGATGTGTCATGTGAGACGGTGAAGGACTACGACTTGTATTGTCATT
ATGTAGCTGGTTTGGTAGGATACGGCCTTTCGGACATCTTTGCGCAGTCT
GGCGTCGAGGATGCGTCCTTCTCAGAGCGAACGGATCTCAGCAACTCAAT
GGGACTGTTCTTGCAAAAGACCAATATCATTCGTGACTACCTCGAAGACA
TCAACGAAGGCCGCACGTTTTGGCCAAAAGAAATATGGAGCAATTACGGA
AACGACCTCTCTGACTTCAGAGATCGAGCTAATCGCAAGTTCGCACTCGC
TTCACTTAATCACATGGTGACGGATGCCATGAGTCACGTTCCTGATTGTA
TAGAGTATATGAGTCGAGTACGCACAGATAATGTCTTCAAATTCGTGGCA
ATTCCACAAGTCATGGCCATCGCTACGTTGGCCGAATGTTACAACAACGG
GAAGGTCTTTGAAGGTGTCGTCAAGATACGCCGCTCGAAAACCGCTGATT
TGGTTCTCCGTACCAAGGACATGGACTTTGTCTATAAGGTGTTCTATGAC
TATGCTCGGACTATCACTCAGAAAATAGAACCTCATGATCCAAACGCAGA
TAGAACTCGTCACCGTCTGAACTGCATTCTCGACATATGCGTTCCACACG
TCCCAGCTACACCAGACTTGGTCATCCCCAATGTGCTGAGCATAATTCTA
TTCTGTGGTCTGAGCAGTTATGTGTTGAAGAGGCGCCAAGAGCATTTCGA
TGGCGCGGTATTCACGTGGCGATCTGCTGGTGGTATCATGGAACCGCGTG
ATATGCTAGCTATTGCAGCGTTGTTCCTGGTGTGCATATACATGTTTGGG
TTCTTCTTGCTTCCATACATGCAAAAACTGCAACGAGAAGAAGTTAGACG
AATGCAACAGTCTAATCGTGATGCCCGTCGCAGAGAACAAGTCGTGATAT
TGGAGGAATGA
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protein sequence of Gcaud1896.t1

>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MAVLKEAMAAGSLKELIALIRYKRKAAAANLLMTSALDDDWSYAYKALSA
VSRSFALVIMELETELRHPVCIFYLVLRTLDTIEDDTSVDPAVRHELCYT
FWQNLESYVKDESCDPWSSSQFGTGVEKELCEKFASVLRCFKSLHTKYQT
IIIDITRRMGCGMAEHIQDVSCETVKDYDLYCHYVAGLVGYGLSDIFAQS
GVEDASFSERTDLSNSMGLFLQKTNIIRDYLEDINEGRTFWPKEIWSNYG
NDLSDFRDRANRKFALASLNHMVTDAMSHVPDCIEYMSRVRTDNVFKFVA
IPQVMAIATLAECYNNGKVFEGVVKIRRSKTADLVLRTKDMDFVYKVFYD
YARTITQKIEPHDPNADRTRHRLNCILDICVPHVPATPDLVIPNVLSIIL
FCGLSSYVLKRRQEHFDGAVFTWRSAGGIMEPRDMLAIAALFLVCIYMFG
FFLLPYMQKLQREEVRRMQQSNRDARRREQVVILEE*
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mRNA from alignment at NODE_807_length_17687_cov_4.345135:5409..6869-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:5409..6869- (Gracilaria caudata M_176_S67 male)
ATGGCTGTTCTCAAGGAGGCAATGGCTGCCGGCTCCCTCAAAGAGTTGAT
CGCGCTCATACGTTACAAGCGCAAAGCTGCCGCAGCCAATTTGCTGATGA
CTTCCGCCCTCGACGATGATTGGAGTTATGCTTACAAAGCCCTCAGCGCG
GTGTCTCGCTCGTTTGCTCTCGTTATCATGGAGCTTGAAACCGAGCTTCG
TCACCCAGTGTGCATCTTTTATCTCGTTCTGCGTACCCTTGATACTATTG
AGGATGATACTTCCGTAGACCCCGCCGTCCGTCACGAATTGTGTTACACC
TTTTGGCAGAACCTTGAATCCTATGTCAAAGACGAATCGTGCGACCCATG
GTCATCCTCCCAATTTGGTACAGGAGTCGAGAAGGAACTCTGCGAAAAAT
TCGCGTCCGTATTGCGTTGCTTCAAGTCACTCCACACCAAGTACCAGACA
ATTATTATAGATATTACCCGTCGAATGGGTTGTGGCATGGCTGAGCACAT
CCAAGATGTGTCATGTGAGACGGTGAAGGACTACGACTTGTATTGTCATT
ATGTAGCTGGTTTGGTAGGATACGGCCTTTCGGACATCTTTGCGCAGTCT
GGCGTCGAGGATGCGTCCTTCTCAGAGCGAACGGATCTCAGCAACTCAAT
GGGACTGTTCTTGCAAAAGACCAATATCATTCGTGACTACCTCGAAGACA
TCAACGAAGGCCGCACGTTTTGGCCAAAAGAAATATGGAGCAATTACGGA
AACGACCTCTCTGACTTCAGAGATCGAGCTAATCGCAAGTTCGCACTCGC
TTCACTTAATCACATGGTGACGGATGCCATGAGTCACGTTCCTGATTGTA
TAGAGTATATGAGTCGAGTACGCACAGATAATGTCTTCAAATTCGTGGCA
ATTCCACAAGTCATGGCCATCGCTACGTTGGCCGAATGTTACAACAACGG
GAAGGTCTTTGAAGGTGTCGTCAAGATACGCCGCTCGAAAACCGCTGATT
TGGTTCTCCGTACCAAGGACATGGACTTTGTCTATAAGGTGTTCTATGAC
TATGCTCGGACTATCACTCAGAAAATAGAACCTCATGATCCAAACGCAGA
TAGAACTCGTCACCGTCTGAACTGCATTCTCGACATATGCGTTCCACACG
TCCCAGCTACACCAGACTTGGTCATCCCCAATGTGCTGAGCATAATTCTA
TTCTGTGGTCTGAGCAGTTATGTGTTGAAGAGGCGCCAAGAGCATTTCGA
TGGCGCGGTATTCACGTGGCGATCTGCTGGTGGTATCATGGAACCGCGTG
ATATGCTAGCTATTGCAGCGTTGTTCCTGGTGTGCATATACATGTTTGGG
TTCTTCTTGCTTCCATACATGCAAAAACTGCAACGAGAAGAAGTTAGACG
AATGCAACAGTCTAATCGTGATGCCCGTCGCAGAGAACAAGTCGTGATAT
TGGAGGAATGA
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Coding sequence (CDS) from alignment at NODE_807_length_17687_cov_4.345135:5409..6869-

>Gcaud1896.t1 ID=Gcaud1896.t1|Name=Gcaud1896.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1461bp|location=Sequence derived from alignment at NODE_807_length_17687_cov_4.345135:5409..6869- (Gracilaria caudata M_176_S67 male)
ATGGCTGTTCTCAAGGAGGCAATGGCTGCCGGCTCCCTCAAAGAGTTGAT
CGCGCTCATACGTTACAAGCGCAAAGCTGCCGCAGCCAATTTGCTGATGA
CTTCCGCCCTCGACGATGATTGGAGTTATGCTTACAAAGCCCTCAGCGCG
GTGTCTCGCTCGTTTGCTCTCGTTATCATGGAGCTTGAAACCGAGCTTCG
TCACCCAGTGTGCATCTTTTATCTCGTTCTGCGTACCCTTGATACTATTG
AGGATGATACTTCCGTAGACCCCGCCGTCCGTCACGAATTGTGTTACACC
TTTTGGCAGAACCTTGAATCCTATGTCAAAGACGAATCGTGCGACCCATG
GTCATCCTCCCAATTTGGTACAGGAGTCGAGAAGGAACTCTGCGAAAAAT
TCGCGTCCGTATTGCGTTGCTTCAAGTCACTCCACACCAAGTACCAGACA
ATTATTATAGATATTACCCGTCGAATGGGTTGTGGCATGGCTGAGCACAT
CCAAGATGTGTCATGTGAGACGGTGAAGGACTACGACTTGTATTGTCATT
ATGTAGCTGGTTTGGTAGGATACGGCCTTTCGGACATCTTTGCGCAGTCT
GGCGTCGAGGATGCGTCCTTCTCAGAGCGAACGGATCTCAGCAACTCAAT
GGGACTGTTCTTGCAAAAGACCAATATCATTCGTGACTACCTCGAAGACA
TCAACGAAGGCCGCACGTTTTGGCCAAAAGAAATATGGAGCAATTACGGA
AACGACCTCTCTGACTTCAGAGATCGAGCTAATCGCAAGTTCGCACTCGC
TTCACTTAATCACATGGTGACGGATGCCATGAGTCACGTTCCTGATTGTA
TAGAGTATATGAGTCGAGTACGCACAGATAATGTCTTCAAATTCGTGGCA
ATTCCACAAGTCATGGCCATCGCTACGTTGGCCGAATGTTACAACAACGG
GAAGGTCTTTGAAGGTGTCGTCAAGATACGCCGCTCGAAAACCGCTGATT
TGGTTCTCCGTACCAAGGACATGGACTTTGTCTATAAGGTGTTCTATGAC
TATGCTCGGACTATCACTCAGAAAATAGAACCTCATGATCCAAACGCAGA
TAGAACTCGTCACCGTCTGAACTGCATTCTCGACATATGCGTTCCACACG
TCCCAGCTACACCAGACTTGGTCATCCCCAATGTGCTGAGCATAATTCTA
TTCTGTGGTCTGAGCAGTTATGTGTTGAAGAGGCGCCAAGAGCATTTCGA
TGGCGCGGTATTCACGTGGCGATCTGCTGGTGGTATCATGGAACCGCGTG
ATATGCTAGCTATTGCAGCGTTGTTCCTGGTGTGCATATACATGTTTGGG
TTCTTCTTGCTTCCATACATGCAAAAACTGCAACGAGAAGAAGTTAGACG
AATGCAACAGTCTAATCGTGATGCCCGTCGCAGAGAACAAGTCGTGATAT
TGGAGGAATGA
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