Gcaud1848.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1848.t1
Unique NameGcaud1848.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length283
Homology
BLAST of Gcaud1848.t1 vs. uniprot
Match: A0A2V3IR34_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR34_9FLOR)

HSP 1 Score: 444 bits (1143), Expect = 7.120e-156
Identity = 208/271 (76.75%), Postives = 239/271 (88.19%), Query Frame = 0
Query:    1 MTFYDAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALELLLLDDLVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYYDADQNHSDGYKPPRFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNALITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVVYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNPLSNTKYLTE-GASPEESQPLL 270
            M  YDAASLA+TALQLGQF+PQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALEL+L+D  VC  S +RCFM +QPLIQM+G+AFLCATMWYWFLKYYDA+ N +D +KPP + TP++ P+TFF+AF+ ++ AFT VGF LL +FGRTS  L+TYA+WCGL++AALN IMWIPQIYVTASYGHKGDVS+WWVLSSVLMDVVYSVYL+ MGEHWTVWANNVPDG+QTTVLLLLILRLEYLDDIAGVDDYGNP+    + T+    P+ESQPLL
Sbjct:    1 MILYDAASLAVTALQLGQFLPQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALELILVDTTVCTASHFRCFMHAQPLIQMVGAAFLCATMWYWFLKYYDANHNQADAFKPPPYFTPQLAPVTFFNAFLFISAAFTAVGFALLQIFGRTSYPLVTYAQWCGLLAAALNAIMWIPQIYVTASYGHKGDVSVWWVLSSVLMDVVYSVYLARMGEHWTVWANNVPDGVQTTVLLLLILRLEYLDDIAGVDDYGNPIHQHAHETDMPMQPDESQPLL 271          
BLAST of Gcaud1848.t1 vs. uniprot
Match: A0A5J4Z8J2_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8J2_PORPP)

HSP 1 Score: 222 bits (565), Expect = 1.080e-67
Identity = 116/248 (46.77%), Postives = 162/248 (65.32%), Query Frame = 0
Query:    5 DAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALELLLLDD--LVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYYDADQNH--SDGYKPPRFLTP--RIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNALITY-AEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVVYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVD 245
            D   L +T LQLGQ +PQH+EM  ++SAVG+S +LL F SLYTY  AL+++L       C +S YRCFM +QPLIQM+GS  L AT+WYW+LKY+   +     D  +   F+    + Q   F+H F+ +A+A  +    ++  +G      +   A + G+ISA LN IMW+PQIYVT  + H+G +S+ WVL SVLMDVVYSVYL+ +G  W+VWANN+PDGIQT+VLL L+L  ++ D  A ++
Sbjct:   53 DMGGLLMTFLQLGQVVPQHWEMYTEQSAVGISAFLLLFGSLYTYFAALDVVLTGQSYFTCGISVYRCFMLNQPLIQMVGSFVLTATLWYWYLKYHKPPREEFFKDAARLSVFVYDGDKHQAYKFYHVFLYIALATALFSVIVIVTYGSIQAPQVEILAHYFGIISAVLNAIMWLPQIYVTYRFKHRGALSLAWVLFSVLMDVVYSVYLAFLGLDWSVWANNIPDGIQTSVLLGLVLYYDWQDRQAALE 300          
BLAST of Gcaud1848.t1 vs. uniprot
Match: A0A1X6NZT7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZT7_PORUM)

HSP 1 Score: 202 bits (514), Expect = 6.060e-60
Identity = 119/296 (40.20%), Postives = 153/296 (51.69%), Query Frame = 0
Query:    5 DAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALELLLL---DDLVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYY---------------------------------------------DADQNHSDGYKPPRFLTPRIQPLTFFHAFVTLA-VAFTVVGFTLLHVFGRTSNALITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVVYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNPL 251
            D   L ++ LQLGQFIPQH+EM  +KS VGVS WLLFF  LYT+L AL++++    +   C  SPYRCF+ +QPL+QM+GSA L   MWYWFL Y                                              DA + H   +      T     L  F AF  +A VA   +G         TS     +A  CG ++  LN +MW+PQI  T +Y HKG +S++WVL SVL DV+Y+ YL  MG   +VW NNVPDGIQT +L  LI    + D  AG DD+G+PL
Sbjct:   12 DIMGLCMSVLQLGQFIPQHFEMYREKSTVGVSAWLLFFGGLYTWLAALDIVITGAGNAFTCGASPYRCFVSNQPLLQMVGSAVLSIGMWYWFLLYQHRVDDVVADNANVEEGNTYDYGSTGGGGGDSLANANGGIGAAGGNDASETHWSDFDG----TQCFNVLVVFMAFSAVAAVAVVHLG---------TSAQAEAFAHVCGYVAGVLNAVMWLPQIASTWAYQHKGALSLYWVLFSVLADVIYTAYLIFMGLDMSVWVNNVPDGIQTAILFGLITHFSWRDRRAGRDDFGHPL 294          
BLAST of Gcaud1848.t1 vs. uniprot
Match: R7QP81_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP81_CHOCR)

HSP 1 Score: 170 bits (430), Expect = 4.650e-49
Identity = 87/183 (47.54%), Postives = 116/183 (63.39%), Query Frame = 0
Query:   89 MWYWFLKYYDADQNHSDGYKPP---RFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNALITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVVYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNPLSN-------TKYLTEGA 261
            MWYWFLKY+   ++  D  +      F    +    FF+AF+  A  FTV    LL  FG  S  + +YA  CGL++A  N +MWIPQI VT ++GHKG +SM WVL+SV+MDV YS+YLS MG HW+VWANN+PDGIQT +LL++++  EY D   G+DD+G+ L N          LTEG+
Sbjct:    1 MWYWFLKYHVESEDIVDSEERKLVGSFFYGTLSARMFFNAFLVSAGVFTVAAGVLLMGFGVNSETVASYAHLCGLLAALFNALMWIPQILVTYAFGHKGALSMGWVLASVIMDVAYSIYLSAMGMHWSVWANNIPDGIQTGILLVMLIWFEYRDRQRGLDDFGHHLENRANEPVLATLLTEGS 183          
BLAST of Gcaud1848.t1 vs. uniprot
Match: M1V5W3_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V5W3_CYAM1)

HSP 1 Score: 91.3 bits (225), Expect = 2.410e-17
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 0
Query:  152 ITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVVYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLE 236
            + +A+ CG ++  L  +MWIPQI  T +YGH+G +S  WVL + + DVVYS+YL+ +G  ++VWANNVPDG+   V L  ++R+E
Sbjct:  263 VLFADVCGYLATLLCTVMWIPQIITTYTYGHRGSLSTLWVLFTFISDVVYSLYLAALGVPFSVWANNVPDGL-CAVFLFFLIRVE 346          
BLAST of Gcaud1848.t1 vs. uniprot
Match: A0A3N2Q899_9PEZI (Uncharacterized protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q899_9PEZI)

HSP 1 Score: 65.1 bits (157), Expect = 2.170e-8
Identity = 61/254 (24.02%), Postives = 109/254 (42.91%), Query Frame = 0
Query:    4 YDAASLAITAL--QLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLVALELLLL----DDLVC--QVSPYRCFMRSQPLIQMIGSAFLC----ATMWYWFLKYYDADQNHSD--GYKPPRFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNALIT-YAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDV------VYSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLE 236
            Y   SL+I+ L   L  ++PQHY +  ++++ G+SPW +   +         +L +     D+ C  QV+P  C +    + Q+ G  ++C      ++  F +Y DA  +  +  G  P       +     FH  + +          L  VF     A +T +A + G+++AAL  + +IPQI+ T   GH G +S    +  + M         +++Y  L  E W+ W   +       VLL + +  E
Sbjct:   18 YFNLSLSISILFGLLISYLPQHYRIISRRTSEGISPWFVLLGTTSATSGFANILTVPPSRQDIACCSQVAPGECLVGLLGIAQL-GVQWICFALILVLFLVFFRYDDASVSEDELAGTPPGWHTAVTVGLACLFHGLIVII---------LTGVFAIGLPAQLTVWANFLGIMAAALAAVQYIPQIWTTYHLGHVGSLS----IPMMCMQTPGGYLFAFNLYRRLGAEGWSTWGIYLLTASMQGVLLAMAIYYE 257          
The following BLAST results are available for this feature:
BLAST of Gcaud1848.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IR34_9FLOR7.120e-15676.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A5J4Z8J2_PORPP1.080e-6746.77Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A1X6NZT7_PORUM6.060e-6040.20Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QP81_CHOCR4.650e-4947.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M1V5W3_CYAM12.410e-1747.06Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A3N2Q899_9PEZI2.170e-824.02Uncharacterized protein n=1 Tax=Sodiomyces alkalin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.290coord: 149..237
e-value: 4.2E-5
score: 25.8
NoneNo IPR availableGENE3D1.20.1280.290coord: 2..107
e-value: 2.0E-5
score: 26.6
NoneNo IPR availablePANTHERPTHR16201SEVEN TRANSMEMBRANE PROTEIN 1-RELATEDcoord: 11..265
NoneNo IPR availablePANTHERPTHR16201:SF11PQ LOOP REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_3G10470)coord: 11..265
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..145
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..156
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..207
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..94
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 177..187
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 208..282
NoneNo IPR availableTMHMMTMhelixcoord: 157..176
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 76..94
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
IPR006603PQ-loop repeatPFAMPF04193PQ-loopcoord: 6..43
e-value: 1.4E-4
score: 21.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:24871..25719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1848.t1Gcaud1848.t1Gracilaria caudata M_176_S67 malemRNANODE_207_length_37223_cov_4.468356 24871..25719 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MTFYDAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLV
ALELLLLDDLVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYYDAD
QNHSDGYKPPRFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNA
LITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVV
YSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNP
LSNTKYLTEGASPEESQPLLSSCTVDSTEEHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006603PQ-loop_rpt