Gcaud1848.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1848.t1
Unique Name	Gcaud1848.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:24871..25719 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85982.XP_007316479.1
PFAMs	PQ-loop
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425
Evalue	6.1e-11
EggNOG OGs	28NJQ@1\|root,2QV5C@2759\|Eukaryota,39S7U@33154\|Opisthokonta,3NUXW@4751\|Fungi,3UZWS@5204\|Basidiomycota
Description	Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1848	Gcaud1848	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 24871..25719 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1848.t1.start1	Gcaud1848.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 24871..24873 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1848.t1.CDS1	Gcaud1848.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 24871..25719 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1848.t1.exon1	Gcaud1848.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 24871..25719 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1848.t1.stop1	Gcaud1848.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 25717..25719 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1848.t1	Gcaud1848.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 24871..25719 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+

mRNA sequence

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MTFYDAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLV
ALELLLLDDLVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYYDAD
QNHSDGYKPPRFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNA
LITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVV
YSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNP
LSNTKYLTEGASPEESQPLLSSCTVDSTEEHV*

spliced messenger RNA

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTTTATGATGCTGCCTCCTTGGCTATTACAGCGCTGCAGCTCGG
CCAGTTTATCCCACAGCATTATGAGATGGCTGTGAAGAAGTCTGCAGTAG
GTGTCTCACCGTGGTTGTTGTTTTTCAATAGCTTGTACACATATCTGGTT
GCGCTTGAGCTGCTTCTACTCGATGATTTGGTTTGCCAGGTCTCGCCATA
CCGTTGCTTTATGAGGTCTCAGCCGCTTATTCAGATGATTGGTAGCGCTT
TCCTTTGCGCCACCATGTGGTACTGGTTTCTGAAATACTACGATGCCGAC
CAGAACCATTCTGATGGTTATAAGCCACCTCGTTTCCTCACGCCTCGCAT
TCAACCTCTTACTTTCTTTCATGCGTTTGTGACACTTGCTGTTGCCTTTA
CAGTGGTTGGATTCACGTTGCTGCATGTTTTCGGTCGTACCAGTAATGCA
TTGATAACGTATGCAGAATGGTGTGGCTTGATTTCTGCTGCGCTCAACGG
CATCATGTGGATCCCTCAAATATATGTAACCGCTTCGTATGGCCACAAGG
GTGATGTTAGTATGTGGTGGGTCTTATCGTCCGTGCTCATGGATGTTGTT
TATTCAGTTTATCTTTCCCTAATGGGCGAACATTGGACGGTTTGGGCCAA
TAACGTACCGGATGGTATTCAAACAACCGTGCTGCTTTTACTTATTCTGC
GTTTGGAATATCTCGATGACATTGCTGGAGTTGATGACTATGGAAATCCC
CTTAGCAACACCAAGTATCTCACTGAAGGTGCATCTCCTGAAGAATCACA
ACCGCTTTTGTCAAGCTGTACAGTCGATAGCACAGAAGAGCATGTTTGA

protein sequence of Gcaud1848.t1

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MTFYDAASLAITALQLGQFIPQHYEMAVKKSAVGVSPWLLFFNSLYTYLV
ALELLLLDDLVCQVSPYRCFMRSQPLIQMIGSAFLCATMWYWFLKYYDAD
QNHSDGYKPPRFLTPRIQPLTFFHAFVTLAVAFTVVGFTLLHVFGRTSNA
LITYAEWCGLISAALNGIMWIPQIYVTASYGHKGDVSMWWVLSSVLMDVV
YSVYLSLMGEHWTVWANNVPDGIQTTVLLLLILRLEYLDDIAGVDDYGNP
LSNTKYLTEGASPEESQPLLSSCTVDSTEEHV*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+ (Gracilaria caudata M_176_S67 male)
ATGACGTTTTATGATGCTGCCTCCTTGGCTATTACAGCGCTGCAGCTCGG
CCAGTTTATCCCACAGCATTATGAGATGGCTGTGAAGAAGTCTGCAGTAG
GTGTCTCACCGTGGTTGTTGTTTTTCAATAGCTTGTACACATATCTGGTT
GCGCTTGAGCTGCTTCTACTCGATGATTTGGTTTGCCAGGTCTCGCCATA
CCGTTGCTTTATGAGGTCTCAGCCGCTTATTCAGATGATTGGTAGCGCTT
TCCTTTGCGCCACCATGTGGTACTGGTTTCTGAAATACTACGATGCCGAC
CAGAACCATTCTGATGGTTATAAGCCACCTCGTTTCCTCACGCCTCGCAT
TCAACCTCTTACTTTCTTTCATGCGTTTGTGACACTTGCTGTTGCCTTTA
CAGTGGTTGGATTCACGTTGCTGCATGTTTTCGGTCGTACCAGTAATGCA
TTGATAACGTATGCAGAATGGTGTGGCTTGATTTCTGCTGCGCTCAACGG
CATCATGTGGATCCCTCAAATATATGTAACCGCTTCGTATGGCCACAAGG
GTGATGTTAGTATGTGGTGGGTCTTATCGTCCGTGCTCATGGATGTTGTT
TATTCAGTTTATCTTTCCCTAATGGGCGAACATTGGACGGTTTGGGCCAA
TAACGTACCGGATGGTATTCAAACAACCGTGCTGCTTTTACTTATTCTGC
GTTTGGAATATCTCGATGACATTGCTGGAGTTGATGACTATGGAAATCCC
CTTAGCAACACCAAGTATCTCACTGAAGGTGCATCTCCTGAAGAATCACA
ACCGCTTTTGTCAAGCTGTACAGTCGATAGCACAGAAGAGCATGTTTGA

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+

>Gcaud1848.t1 ID=Gcaud1848.t1|Name=Gcaud1848.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:24871..25719+ (Gracilaria caudata M_176_S67 male)
ATGACGTTTTATGATGCTGCCTCCTTGGCTATTACAGCGCTGCAGCTCGG
CCAGTTTATCCCACAGCATTATGAGATGGCTGTGAAGAAGTCTGCAGTAG
GTGTCTCACCGTGGTTGTTGTTTTTCAATAGCTTGTACACATATCTGGTT
GCGCTTGAGCTGCTTCTACTCGATGATTTGGTTTGCCAGGTCTCGCCATA
CCGTTGCTTTATGAGGTCTCAGCCGCTTATTCAGATGATTGGTAGCGCTT
TCCTTTGCGCCACCATGTGGTACTGGTTTCTGAAATACTACGATGCCGAC
CAGAACCATTCTGATGGTTATAAGCCACCTCGTTTCCTCACGCCTCGCAT
TCAACCTCTTACTTTCTTTCATGCGTTTGTGACACTTGCTGTTGCCTTTA
CAGTGGTTGGATTCACGTTGCTGCATGTTTTCGGTCGTACCAGTAATGCA
TTGATAACGTATGCAGAATGGTGTGGCTTGATTTCTGCTGCGCTCAACGG
CATCATGTGGATCCCTCAAATATATGTAACCGCTTCGTATGGCCACAAGG
GTGATGTTAGTATGTGGTGGGTCTTATCGTCCGTGCTCATGGATGTTGTT
TATTCAGTTTATCTTTCCCTAATGGGCGAACATTGGACGGTTTGGGCCAA
TAACGTACCGGATGGTATTCAAACAACCGTGCTGCTTTTACTTATTCTGC
GTTTGGAATATCTCGATGACATTGCTGGAGTTGATGACTATGGAAATCCC
CTTAGCAACACCAAGTATCTCACTGAAGGTGCATCTCCTGAAGAATCACA
ACCGCTTTTGTCAAGCTGTACAGTCGATAGCACAGAAGAGCATGTTTGA