Gcaud1664.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1664.t1
Unique Name	Gcaud1664.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	521

Homology

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BLAST of Gcaud1664.t1 vs. uniprot
Match: A0A2V3J0A0_9FLOR (Senescence domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0A0_9FLOR)

HSP 1 Score: 425 bits (1092), Expect = 1.190e-140
Identity = 251/441 (56.92%), Postives = 310/441 (70.29%), Query Frame = 0

Query:   13 ADPRLYPSPATPPSASAPPRPPLAIPTGYPQPGRXXXXXXXXXXXXXIAPSHPPRPASAPPYNANTEALPPGFEVLIQLDASIFEKINPDASLPLQFHGVPALPPPQPSAPLLVVQGPLAPDPQ--SSQMLYYAFINTRSFNFPLMPSTTCRRIGPKSFRIKVDHRRFIITLTPSTNPKMVQGFIALLQWFCTWKDVEGSHIPVRMDDSASTASSTSPTSPG----NGTIFDSVGDKVVQRIEKFAETLNAKTQSKLEKHQVVAASARERGDAKDVSLGGKVTVGALNATQKVFATTAKVTGAATDKIASTLGRSVTRTVAKPLANAPEGSKRRRFYVQLASGCLAAGRIFVTGDRQLRMYIGNTVDSAALMTGAKYGAEAEHACRQVGHIIVDGVRIYKFPSDLGYKSLMQSGVEEELKRKGELPLPP----PPPTYADE 443
            A P L+P+   PPS    P+PP  +P+ YPQPG XXXXXXXXXXXXX   +H  RP SAP     +E LPPGFEVLI+L+A+I EK++P+      FHGVP LPPPQPSAPLLV+QGPLA DP   ++ MLYYAFINTRS+NFPLMPST+CRRI   +FRI+VD+RRF++ L PST PK V+GFIALLQWFCTWK+ EGS  P R+ +S ++                T+F  +GD VV  IEK +   N  TQ  L +    A S R RG AKD+++GG+ T G L  TQKV    AKV  A TDKIA T+GR VT+TVAKPLA+APE S RR FY Q+ASGCLAAGRI+V+ D+ +R+++ NT D+AAL+ GAKYG +AEHA RQ+  I  D   + KFPS+LGYKSLM+S VEEELKRKG+   P     PPP++A+E
Sbjct:   20 ATPSLHPNITNPPS----PKPPQPVPSSYPQPGXXXXXXXXXXXXXXXX-TH--RPHSAPAEPLQSEPLPPGFEVLIELNATITEKLHPNTPQHHNFHGVPPLPPPQPSAPLLVIQGPLATDPSQPNANMLYYAFINTRSYNFPLMPSTSCRRIAQDAFRIRVDNRRFVVALHPSTPPKHVEGFIALLQWFCTWKEPEGSLPPARLSESTTSXXXXXXXXXXXXXPKSTVFTKIGDNVVDVIEKVSNRANNTTQRYLSEKHSTAVSNRNRGAAKDLNIGGRATAGVLGTTQKVVGAVAKVAVATTDKIACTVGRRVTKTVAKPLASAPERSIRRGFYDQIASGCLAAGRIYVSVDKNVRLFMANTGDTAALVAGAKYGPQAEHASRQIAQIAYDAYHVMKFPSELGYKSLMKSSVEEELKRKGDDTTPDDQVQPPPSWANE 453

The following BLAST results are available for this feature:

BLAST of Gcaud1664.t1 vs. uniprot

BLAST of Gcaud1664.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J0A0_9FLOR	1.190e-140	56.92	Senescence domain-containing protein n=1 Tax=Graci...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..494
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 425..505
None	No IPR available	PANTHER	PTHR48125:SF4	LP07818P1	coord: 9..495
None	No IPR available	PANTHER	PTHR48125	LP07818P1	coord: 9..495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_866_length_16874_cov_4.313174	contig	NODE_866_length_16874_cov_4.313174:9..1571 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1	Gcaud1664.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_866_length_16874_cov_4.313174 9..1571 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MSRSASRNGSSSADPRLYPSPATPPSASAPPRPPLAIPTGYPQPGRPSRP
SPTPSTPSTIAPSHPPRPASAPPYNANTEALPPGFEVLIQLDASIFEKIN
PDASLPLQFHGVPALPPPQPSAPLLVVQGPLAPDPQSSQMLYYAFINTRS
FNFPLMPSTTCRRIGPKSFRIKVDHRRFIITLTPSTNPKMVQGFIALLQW
FCTWKDVEGSHIPVRMDDSASTASSTSPTSPGNGTIFDSVGDKVVQRIEK
FAETLNAKTQSKLEKHQVVAASARERGDAKDVSLGGKVTVGALNATQKVF
ATTAKVTGAATDKIASTLGRSVTRTVAKPLANAPEGSKRRRFYVQLASGC
LAAGRIFVTGDRQLRMYIGNTVDSAALMTGAKYGAEAEHACRQVGHIIVD
GVRIYKFPSDLGYKSLMQSGVEEELKRKGELPLPPPPPTYADEPADDSLV
NPTRKDSAQRQSPQLSVPDPPSYSSTSSSSVPSMIQTPTAPRQTRYEEPQ
FEEPVMHIPFQDLSVNLPKK*