Gcaud1664.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1664.t1
Unique Name	Gcaud1664.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	521

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_866_length_16874_cov_4.313174	contig	NODE_866_length_16874_cov_4.313174:9..1571 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1664	Gcaud1664	Gracilaria caudata M_176_S67 male	gene	NODE_866_length_16874_cov_4.313174 9..1571 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1.start1	Gcaud1664.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_866_length_16874_cov_4.313174 9..11 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1.CDS1	Gcaud1664.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_866_length_16874_cov_4.313174 9..1571 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1.exon1	Gcaud1664.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_866_length_16874_cov_4.313174 9..1571 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1.stop1	Gcaud1664.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_866_length_16874_cov_4.313174 1569..1571 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1664.t1	Gcaud1664.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_866_length_16874_cov_4.313174 9..1571 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_866_length_16874_cov_4.313174:9..1571+
coding sequence from alignment at NODE_866_length_16874_cov_4.313174:9..1571+

mRNA sequence

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=521bp
MSRSASRNGSSSADPRLYPSPATPPSASAPPRPPLAIPTGYPQPGRPSRP
SPTPSTPSTIAPSHPPRPASAPPYNANTEALPPGFEVLIQLDASIFEKIN
PDASLPLQFHGVPALPPPQPSAPLLVVQGPLAPDPQSSQMLYYAFINTRS
FNFPLMPSTTCRRIGPKSFRIKVDHRRFIITLTPSTNPKMVQGFIALLQW
FCTWKDVEGSHIPVRMDDSASTASSTSPTSPGNGTIFDSVGDKVVQRIEK
FAETLNAKTQSKLEKHQVVAASARERGDAKDVSLGGKVTVGALNATQKVF
ATTAKVTGAATDKIASTLGRSVTRTVAKPLANAPEGSKRRRFYVQLASGC
LAAGRIFVTGDRQLRMYIGNTVDSAALMTGAKYGAEAEHACRQVGHIIVD
GVRIYKFPSDLGYKSLMQSGVEEELKRKGELPLPPPPPTYADEPADDSLV
NPTRKDSAQRQSPQLSVPDPPSYSSTSSSSVPSMIQTPTAPRQTRYEEPQ
FEEPVMHIPFQDLSVNLPKK*

spliced messenger RNA

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:9..1571+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTCCGCCTCCCGCAACGGCTCCTCTTCGGCCGACCCCCGCCT
CTACCCCTCCCCTGCAACGCCGCCTTCCGCCTCGGCTCCTCCGCGACCGC
CTCTCGCTATCCCCACCGGCTATCCGCAGCCTGGTCGCCCCAGCCGCCCT
TCGCCAACGCCCTCCACTCCGAGTACTATCGCGCCTTCCCATCCGCCCCG
CCCCGCTTCCGCTCCCCCATACAACGCGAACACTGAGGCACTGCCGCCCG
GCTTCGAGGTCCTCATCCAGCTCGACGCTTCCATCTTCGAGAAGATCAAC
CCAGATGCCTCTCTCCCGCTGCAATTCCACGGCGTTCCGGCCCTCCCGCC
TCCGCAGCCTTCTGCTCCCCTTCTCGTTGTCCAGGGTCCACTTGCGCCCG
ACCCCCAATCGTCCCAAATGCTTTACTACGCCTTCATCAACACGCGCTCA
TTCAATTTCCCGCTCATGCCGTCCACTACATGTCGTAGAATTGGTCCAAA
GTCCTTCCGCATCAAAGTGGACCACCGTCGCTTTATTATCACCCTAACCC
CGTCTACCAATCCGAAGATGGTTCAAGGGTTCATCGCATTGCTGCAGTGG
TTCTGCACCTGGAAGGATGTCGAAGGTTCACACATTCCTGTGCGTATGGA
TGATTCTGCATCCACCGCATCTAGTACTTCACCAACTTCACCAGGTAATG
GCACAATTTTCGACAGCGTTGGCGATAAGGTCGTTCAGAGGATTGAGAAG
TTCGCCGAAACCTTGAACGCCAAGACGCAAAGCAAACTGGAAAAGCATCA
GGTTGTAGCCGCGAGTGCGCGTGAAAGGGGGGATGCCAAGGACGTAAGCC
TAGGTGGCAAAGTCACCGTTGGCGCACTCAATGCCACTCAAAAAGTGTTT
GCTACCACTGCCAAAGTTACTGGTGCCGCCACTGACAAGATTGCCTCAAC
ACTTGGGCGCAGCGTCACAAGGACTGTGGCTAAGCCTTTGGCAAACGCTC
CGGAGGGTAGTAAGAGAAGGAGATTCTATGTGCAACTCGCTTCCGGATGC
TTGGCGGCTGGTCGCATTTTTGTGACTGGCGACCGTCAACTCAGAATGTA
TATTGGTAATACTGTAGATTCTGCGGCACTCATGACAGGTGCAAAGTATG
GAGCCGAAGCCGAACATGCATGTCGTCAAGTTGGCCATATTATAGTGGAC
GGTGTTCGCATATATAAGTTCCCGTCAGATTTGGGGTATAAATCGCTAAT
GCAATCAGGAGTTGAAGAAGAGTTGAAGAGGAAAGGCGAGTTGCCATTAC
CCCCACCACCGCCAACATACGCTGATGAACCTGCTGATGATTCGCTGGTC
AATCCCACTCGAAAAGATTCGGCGCAGAGACAGTCTCCTCAGCTATCTGT
TCCAGACCCGCCGTCTTACTCGTCAACATCCTCATCATCAGTGCCTTCCA
TGATACAAACGCCTACAGCTCCACGGCAAACTCGATATGAAGAACCTCAG
TTTGAAGAACCTGTCATGCATATTCCATTTCAAGACTTGAGCGTCAATCT
TCCAAAGAAGTAA

protein sequence of Gcaud1664.t1

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MSRSASRNGSSSADPRLYPSPATPPSASAPPRPPLAIPTGYPQPGRPSRP
SPTPSTPSTIAPSHPPRPASAPPYNANTEALPPGFEVLIQLDASIFEKIN
PDASLPLQFHGVPALPPPQPSAPLLVVQGPLAPDPQSSQMLYYAFINTRS
FNFPLMPSTTCRRIGPKSFRIKVDHRRFIITLTPSTNPKMVQGFIALLQW
FCTWKDVEGSHIPVRMDDSASTASSTSPTSPGNGTIFDSVGDKVVQRIEK
FAETLNAKTQSKLEKHQVVAASARERGDAKDVSLGGKVTVGALNATQKVF
ATTAKVTGAATDKIASTLGRSVTRTVAKPLANAPEGSKRRRFYVQLASGC
LAAGRIFVTGDRQLRMYIGNTVDSAALMTGAKYGAEAEHACRQVGHIIVD
GVRIYKFPSDLGYKSLMQSGVEEELKRKGELPLPPPPPTYADEPADDSLV
NPTRKDSAQRQSPQLSVPDPPSYSSTSSSSVPSMIQTPTAPRQTRYEEPQ
FEEPVMHIPFQDLSVNLPKK*

mRNA from alignment at NODE_866_length_16874_cov_4.313174:9..1571+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:9..1571+ (Gracilaria caudata M_176_S67 male)
ATGAGTCGCTCCGCCTCCCGCAACGGCTCCTCTTCGGCCGACCCCCGCCT
CTACCCCTCCCCTGCAACGCCGCCTTCCGCCTCGGCTCCTCCGCGACCGC
CTCTCGCTATCCCCACCGGCTATCCGCAGCCTGGTCGCCCCAGCCGCCCT
TCGCCAACGCCCTCCACTCCGAGTACTATCGCGCCTTCCCATCCGCCCCG
CCCCGCTTCCGCTCCCCCATACAACGCGAACACTGAGGCACTGCCGCCCG
GCTTCGAGGTCCTCATCCAGCTCGACGCTTCCATCTTCGAGAAGATCAAC
CCAGATGCCTCTCTCCCGCTGCAATTCCACGGCGTTCCGGCCCTCCCGCC
TCCGCAGCCTTCTGCTCCCCTTCTCGTTGTCCAGGGTCCACTTGCGCCCG
ACCCCCAATCGTCCCAAATGCTTTACTACGCCTTCATCAACACGCGCTCA
TTCAATTTCCCGCTCATGCCGTCCACTACATGTCGTAGAATTGGTCCAAA
GTCCTTCCGCATCAAAGTGGACCACCGTCGCTTTATTATCACCCTAACCC
CGTCTACCAATCCGAAGATGGTTCAAGGGTTCATCGCATTGCTGCAGTGG
TTCTGCACCTGGAAGGATGTCGAAGGTTCACACATTCCTGTGCGTATGGA
TGATTCTGCATCCACCGCATCTAGTACTTCACCAACTTCACCAGGTAATG
GCACAATTTTCGACAGCGTTGGCGATAAGGTCGTTCAGAGGATTGAGAAG
TTCGCCGAAACCTTGAACGCCAAGACGCAAAGCAAACTGGAAAAGCATCA
GGTTGTAGCCGCGAGTGCGCGTGAAAGGGGGGATGCCAAGGACGTAAGCC
TAGGTGGCAAAGTCACCGTTGGCGCACTCAATGCCACTCAAAAAGTGTTT
GCTACCACTGCCAAAGTTACTGGTGCCGCCACTGACAAGATTGCCTCAAC
ACTTGGGCGCAGCGTCACAAGGACTGTGGCTAAGCCTTTGGCAAACGCTC
CGGAGGGTAGTAAGAGAAGGAGATTCTATGTGCAACTCGCTTCCGGATGC
TTGGCGGCTGGTCGCATTTTTGTGACTGGCGACCGTCAACTCAGAATGTA
TATTGGTAATACTGTAGATTCTGCGGCACTCATGACAGGTGCAAAGTATG
GAGCCGAAGCCGAACATGCATGTCGTCAAGTTGGCCATATTATAGTGGAC
GGTGTTCGCATATATAAGTTCCCGTCAGATTTGGGGTATAAATCGCTAAT
GCAATCAGGAGTTGAAGAAGAGTTGAAGAGGAAAGGCGAGTTGCCATTAC
CCCCACCACCGCCAACATACGCTGATGAACCTGCTGATGATTCGCTGGTC
AATCCCACTCGAAAAGATTCGGCGCAGAGACAGTCTCCTCAGCTATCTGT
TCCAGACCCGCCGTCTTACTCGTCAACATCCTCATCATCAGTGCCTTCCA
TGATACAAACGCCTACAGCTCCACGGCAAACTCGATATGAAGAACCTCAG
TTTGAAGAACCTGTCATGCATATTCCATTTCAAGACTTGAGCGTCAATCT
TCCAAAGAAGTAA

Coding sequence (CDS) from alignment at NODE_866_length_16874_cov_4.313174:9..1571+

>Gcaud1664.t1 ID=Gcaud1664.t1|Name=Gcaud1664.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1563bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:9..1571+ (Gracilaria caudata M_176_S67 male)
ATGAGTCGCTCCGCCTCCCGCAACGGCTCCTCTTCGGCCGACCCCCGCCT
CTACCCCTCCCCTGCAACGCCGCCTTCCGCCTCGGCTCCTCCGCGACCGC
CTCTCGCTATCCCCACCGGCTATCCGCAGCCTGGTCGCCCCAGCCGCCCT
TCGCCAACGCCCTCCACTCCGAGTACTATCGCGCCTTCCCATCCGCCCCG
CCCCGCTTCCGCTCCCCCATACAACGCGAACACTGAGGCACTGCCGCCCG
GCTTCGAGGTCCTCATCCAGCTCGACGCTTCCATCTTCGAGAAGATCAAC
CCAGATGCCTCTCTCCCGCTGCAATTCCACGGCGTTCCGGCCCTCCCGCC
TCCGCAGCCTTCTGCTCCCCTTCTCGTTGTCCAGGGTCCACTTGCGCCCG
ACCCCCAATCGTCCCAAATGCTTTACTACGCCTTCATCAACACGCGCTCA
TTCAATTTCCCGCTCATGCCGTCCACTACATGTCGTAGAATTGGTCCAAA
GTCCTTCCGCATCAAAGTGGACCACCGTCGCTTTATTATCACCCTAACCC
CGTCTACCAATCCGAAGATGGTTCAAGGGTTCATCGCATTGCTGCAGTGG
TTCTGCACCTGGAAGGATGTCGAAGGTTCACACATTCCTGTGCGTATGGA
TGATTCTGCATCCACCGCATCTAGTACTTCACCAACTTCACCAGGTAATG
GCACAATTTTCGACAGCGTTGGCGATAAGGTCGTTCAGAGGATTGAGAAG
TTCGCCGAAACCTTGAACGCCAAGACGCAAAGCAAACTGGAAAAGCATCA
GGTTGTAGCCGCGAGTGCGCGTGAAAGGGGGGATGCCAAGGACGTAAGCC
TAGGTGGCAAAGTCACCGTTGGCGCACTCAATGCCACTCAAAAAGTGTTT
GCTACCACTGCCAAAGTTACTGGTGCCGCCACTGACAAGATTGCCTCAAC
ACTTGGGCGCAGCGTCACAAGGACTGTGGCTAAGCCTTTGGCAAACGCTC
CGGAGGGTAGTAAGAGAAGGAGATTCTATGTGCAACTCGCTTCCGGATGC
TTGGCGGCTGGTCGCATTTTTGTGACTGGCGACCGTCAACTCAGAATGTA
TATTGGTAATACTGTAGATTCTGCGGCACTCATGACAGGTGCAAAGTATG
GAGCCGAAGCCGAACATGCATGTCGTCAAGTTGGCCATATTATAGTGGAC
GGTGTTCGCATATATAAGTTCCCGTCAGATTTGGGGTATAAATCGCTAAT
GCAATCAGGAGTTGAAGAAGAGTTGAAGAGGAAAGGCGAGTTGCCATTAC
CCCCACCACCGCCAACATACGCTGATGAACCTGCTGATGATTCGCTGGTC
AATCCCACTCGAAAAGATTCGGCGCAGAGACAGTCTCCTCAGCTATCTGT
TCCAGACCCGCCGTCTTACTCGTCAACATCCTCATCATCAGTGCCTTCCA
TGATACAAACGCCTACAGCTCCACGGCAAACTCGATATGAAGAACCTCAG
TTTGAAGAACCTGTCATGCATATTCCATTTCAAGACTTGAGCGTCAATCT
TCCAAAGAAGTAA