Gcaud9599.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9599.t1
Unique Name	Gcaud9599.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	516

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_586_length_21355_cov_4.545758	contig	NODE_586_length_21355_cov_4.545758:8692..12956 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9599	Gcaud9599	Gracilaria caudata M_176_S67 male	gene	NODE_586_length_21355_cov_4.545758 8692..12956 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1	Gcaud9599.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_586_length_21355_cov_4.545758 8692..12956 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1.stop1	Gcaud9599.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_586_length_21355_cov_4.545758 8692..8694 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1.CDS1	Gcaud9599.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_586_length_21355_cov_4.545758 8692..9477 -
Gcaud9599.t1.CDS2	Gcaud9599.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_586_length_21355_cov_4.545758 12195..12956 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1.exon1	Gcaud9599.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_586_length_21355_cov_4.545758 8692..9477 -
Gcaud9599.t1.exon2	Gcaud9599.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_586_length_21355_cov_4.545758 12195..12956 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1.intron1	Gcaud9599.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_586_length_21355_cov_4.545758 9478..12194 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9599.t1.start1	Gcaud9599.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_586_length_21355_cov_4.545758 12954..12956 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_586_length_21355_cov_4.545758:8692..12956-
coding sequence from alignment at NODE_586_length_21355_cov_4.545758:8692..12956-

mRNA sequence

>Gcaud9599.t1 ID=Gcaud9599.t1|Name=Gcaud9599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp
MLPNLLRFVAPIAGFVVVVKILRELNSKLQCDEDEDEHLGEEMERQVKEE
KRNEVHGEVCMSSQASNTQTSDEIVQDHKVVNLSSATSSSGASYSSHRDR
TFVSLSKTSTEEGCVDEQPDYSGLSNCRHGNSPDCEIRCSEDLDEPTDGI
CYSVVTARCEFNETEATAAENEQASTTRSDIELGQQVADESHLVPSNPGV
MVDKAHVDALCVEMFGHLRRRRCIGIVFARAGNEIPDEKHGRIKALVTHG
LLFPIPERSNMWAKVLRIALPLAGILVGLRVLFPSNSVEKDEDEENNEQQ
DGSTVVEGIERDEIAEHVQSCGQEVEMQTQNGFAQDLALVNLSSATSVSA
LSNCLNTSTAGEGTGCPDAIATPHVPGDHGLETAPNANGEEHEQSSECEP
DKGGVASDSHSAPGTPGVMVDEARVDGLCVAMFRHLRTRRCIGEVFARVG
RVQDTPNEKHGRIKTLIRRGLLFPVKGWQKRVRRTHNSRVRQLALAMGVA
LDQAMPWVPQQFERT*

spliced messenger RNA

>Gcaud9599.t1 ID=Gcaud9599.t1|Name=Gcaud9599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:8692..12956- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCAAATTTGTTACGATTCGTAGCGCCCATTGCAGGCTTCGTCGT
GGTAGTTAAAATTCTCCGTGAGTTGAATTCAAAACTACAATGTGACGAAG
ATGAAGACGAACATCTAGGAGAAGAGATGGAAAGGCAGGTGAAAGAGGAA
AAAAGGAACGAAGTCCATGGAGAAGTGTGTATGAGCAGTCAGGCCTCAAA
CACCCAGACATCAGATGAAATTGTTCAAGACCACAAGGTTGTCAACCTGT
CATCCGCCACAAGTTCATCTGGTGCCTCGTATTCATCACATCGTGACCGC
ACATTCGTTAGCTTATCCAAAACCTCGACCGAGGAAGGATGTGTGGACGA
ACAGCCAGATTATTCAGGTCTGTCCAATTGTCGTCATGGGAACTCTCCAG
ATTGTGAAATTCGTTGTTCTGAAGATCTCGATGAACCTACGGATGGAATA
TGCTATTCTGTAGTGACTGCTAGATGTGAATTTAATGAAACTGAAGCTAC
TGCTGCCGAAAACGAGCAAGCGTCTACAACGCGCTCAGATATTGAGCTTG
GGCAACAAGTCGCCGATGAGTCCCATCTCGTTCCCAGTAATCCCGGAGTG
ATGGTTGATAAGGCGCATGTAGACGCCCTCTGCGTCGAAATGTTCGGACA
TTTACGCAGAAGGAGATGTATTGGGATCGTATTTGCTAGAGCAGGAAATG
AAATCCCGGATGAAAAGCACGGTCGAATCAAGGCTCTAGTCACTCATGGG
CTACTGTTTCCAATTCCAGAGCGAAGCAATATGTGGGCAAAAGTGTTACG
AATAGCGCTACCTCTCGCAGGCATTCTCGTGGGACTCCGAGTGCTTTTCC
CGTCAAATTCTGTTGAAAAGGACGAAGACGAAGAGAACAATGAACAACAA
GATGGGTCGACTGTCGTGGAAGGCATAGAAAGAGACGAGATTGCCGAACA
TGTGCAAAGTTGCGGTCAGGAGGTCGAAATGCAGACACAGAATGGGTTCG
CACAAGACTTAGCCCTTGTGAACTTATCTTCTGCGACCAGTGTCTCCGCC
TTATCGAACTGTCTGAACACGTCTACTGCTGGAGAGGGTACCGGCTGTCC
AGATGCAATCGCTACTCCTCATGTACCTGGAGATCATGGGCTTGAAACCG
CTCCCAACGCTAACGGTGAAGAACATGAACAGAGCTCTGAATGTGAGCCT
GATAAAGGAGGAGTCGCCAGTGATTCCCATTCTGCTCCGGGAACTCCCGG
AGTGATGGTCGATGAGGCGCGGGTGGACGGCCTTTGTGTTGCCATGTTCA
GACATTTGCGCACAAGGCGCTGCATTGGGGAGGTGTTTGCTCGTGTTGGT
AGAGTGCAAGACACCCCTAATGAAAAACACGGCAGGATCAAGACTCTGAT
CCGTCGTGGGCTGCTGTTTCCTGTAAAGGGATGGCAAAAAAGAGTGCGTC
GCACTCACAATTCGCGTGTGCGACAGCTCGCCCTGGCGATGGGTGTTGCT
CTAGACCAAGCAATGCCGTGGGTTCCGCAGCAGTTTGAGAGAACTTGA

protein sequence of Gcaud9599.t1

>Gcaud9599.t1 ID=Gcaud9599.t1|Name=Gcaud9599.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=516bp
MLPNLLRFVAPIAGFVVVVKILRELNSKLQCDEDEDEHLGEEMERQVKEE
KRNEVHGEVCMSSQASNTQTSDEIVQDHKVVNLSSATSSSGASYSSHRDR
TFVSLSKTSTEEGCVDEQPDYSGLSNCRHGNSPDCEIRCSEDLDEPTDGI
CYSVVTARCEFNETEATAAENEQASTTRSDIELGQQVADESHLVPSNPGV
MVDKAHVDALCVEMFGHLRRRRCIGIVFARAGNEIPDEKHGRIKALVTHG
LLFPIPERSNMWAKVLRIALPLAGILVGLRVLFPSNSVEKDEDEENNEQQ
DGSTVVEGIERDEIAEHVQSCGQEVEMQTQNGFAQDLALVNLSSATSVSA
LSNCLNTSTAGEGTGCPDAIATPHVPGDHGLETAPNANGEEHEQSSECEP
DKGGVASDSHSAPGTPGVMVDEARVDGLCVAMFRHLRTRRCIGEVFARVG
RVQDTPNEKHGRIKTLIRRGLLFPVKGWQKRVRRTHNSRVRQLALAMGVA
LDQAMPWVPQQFERT*

mRNA from alignment at NODE_586_length_21355_cov_4.545758:8692..12956-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9599.t1 ID=Gcaud9599.t1|Name=Gcaud9599.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=4265bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:8692..12956- (Gracilaria caudata M_176_S67 male)
ATGCTGCCAAATTTGTTACGATTCGTAGCGCCCATTGCAGGCTTCGTCGT
GGTAGTTAAAATTCTCCGTGAGTTGAATTCAAAACTACAATGTGACGAAG
ATGAAGACGAACATCTAGGAGAAGAGATGGAAAGGCAGGTGAAAGAGGAA
AAAAGGAACGAAGTCCATGGAGAAGTGTGTATGAGCAGTCAGGCCTCAAA
CACCCAGACATCAGATGAAATTGTTCAAGACCACAAGGTTGTCAACCTGT
CATCCGCCACAAGTTCATCTGGTGCCTCGTATTCATCACATCGTGACCGC
ACATTCGTTAGCTTATCCAAAACCTCGACCGAGGAAGGATGTGTGGACGA
ACAGCCAGATTATTCAGGTCTGTCCAATTGTCGTCATGGGAACTCTCCAG
ATTGTGAAATTCGTTGTTCTGAAGATCTCGATGAACCTACGGATGGAATA
TGCTATTCTGTAGTGACTGCTAGATGTGAATTTAATGAAACTGAAGCTAC
TGCTGCCGAAAACGAGCAAGCGTCTACAACGCGCTCAGATATTGAGCTTG
GGCAACAAGTCGCCGATGAGTCCCATCTCGTTCCCAGTAATCCCGGAGTG
ATGGTTGATAAGGCGCATGTAGACGCCCTCTGCGTCGAAATGTTCGGACA
TTTACGCAGAAGGAGATGTATTGGGATCGTATTTGCTAGAGCAGGAAATG
AAATCCCGGATGAAAAGCACGGTCGAATCAAGGCTCTAGTCACTCATGGG
CTACTGTTTCCAGTGAAAAGATGGCAAAAAAAGAGGGCGTCGCGCTCACA
ATTCTCTTGTGCGACAGCTCGCCCGTACATTGGGTGTTCCTTTGGATCAA
GCCATGCCGTGAATTCCACAACAGTTAGAATGAATATGATACGCGTTTTT
TCTTGTCTGATAAACAACAATTCTTGCGAGCAAAGTGATTTTCTTCCAGT
TGCCAATTCAACAGATGATGTGAATCTGGAAGCGCCACGTCAAATTCTGG
CCTTTTCAAGGAAAGAAAAGTACCTGTAGGTGCTGCTCAGTTGTGTTTTG
AATTAGGACAAAGCTACCATAAGAAAGAAGAAGAAGGCGATCTGAAGAAT
ACCTCTGATTTGCGAGTAGGCGGAAAATGAAGCTACAACAGGTTCTTTTC
TTTTACGGCACTCATCGATTATCGAGAAAAACTTATTTGAGAGGGAATAT
GTGAAGGTAGAGTACACGTTGTTTGATATGTCTGTTGTGTGGGTATGTGT
GCCAGCTCACGGTTAAATAGCACGATACGGTTCCAAGAAATTGAGTGTCA
GATGATTTCTTTCCCTTTCACCTCCTACTGATTGCAAATATTCACGATAA
AGCTTTGTACCGAAGCTGACCTCCTGTGAGAAGCACTCTTACTCTAATTC
TTTCTAATTAAACACGGAGCGTGACTCAGCTTTATTGTCATTCGAATTGA
ACAGTTCCAATTAAGTCAGTGAGCTCTCTCAACACTATTGTCCTCGTAAC
TGAAAATAATTCTGGCTTTTCAAGGAACGAAAGATTTTTTATCATGCATT
GCGCATTGTGACGCAAGCACGTTGTGGCTGCCGCTGACATTTGGAACTGT
GACAGATGATGACATGTGGAACTGGAATGTGCAAGTGTTGCGTGACTTTG
ATCTGTACTTCAGTGGACAAATGTTCTACGCGTACACGAAGCACACGTGC
ACTACTTGTGTCCATGACGATGATCTGATCACCGTACCCTCTCTCCAATC
CTTGCCTGTTGTCCTCTATCTGGAACATGTGGACAAATATGCAACACGTA
CACTACGCAGACTGTCAGTCTCCAGTTCAGTCTTTCTACATGATTTAATC
GTCTCATCCTGTGCGCTACCACTATCAGTCTCCATGATTGTGAACGTTCG
TCTGCATCACGTTCAAGTTATAGATATCAATCTTCTTTGCCTTAAAGATT
TTTGTACCCACCCACGCCGCCCACTACTCTACTACCAATGCGGCCGGGAG
CAAATTTATGGCAAAAATTAAGGGTTGCTGGTAGCAAATGAGCTACGAGA
TTGACGCGCTCAAGCAGCTGAGATGCTTTGCCTCTTGGCTCCTTGCTGCT
CTGGAGTCTTCTTTTTGGTGTTGAGAAGACGCTCAGAACAGATATTTGAA
CCCAAACTTATGCAGTAGAGTAAACCATACTGCGTTCTGTACTAACCAAC
CTGACACAATATCCAGCTCAGCGACTGATAATAAGCTTTACATCGTTACA
GGATGGCAAGATACTGTCGTGTTGCGGCGGTCCCGCAGATTCGACAGATT
CTAAGGAAATTTGCATGGAGTGCACAATTATGGTTACCCCTTGTATTTCA
ATTCGGGAATTGTCGCACAGAAAATAAACACATTGGTTCTTCAAAACTCT
GGTACGCAACTATGTTGCAGTTCCTCACAGCGGTAATTACACGGAACAGC
CGGTATAGCCATCGAAGCGAAGGAAGCAGGCATTGCTCAAGCGAGGAAAG
CTGGGATGGCTCCTAAGAGATTGGGACGAGACAAATCAAGGGAAGATAAC
GGAGAGTCGGAAATGATGGAGGAAACATGTGAGTAACGTGTCGTGTTCGA
AGCGTGGTGAGATACTAAAGACGATGGATTTGTTCATGATAGCTTCTGTC
TCTTGTTACCACACGCGAACTGTTATGAGAAGTTGGTAGTTGATATTCTC
GAGACCGTAACGGATTGTAGGGCGCTTAGCATTGGATGGAATCTACGATG
TGGAACAAGACATTAGGGAAAAGAAAGCATGCGTGTGAAAGAATCCGGTG
AAGCACAGGTGCAGTACCATTTGGATATGGTTACTAATGCTGCGCGCAAA
AGCTGGAAAACTGTGAGCAAAAACACCTACGTCACCGAGTGACCGTACAA
CCGTAGCTTTGTTACGAAGCTACAGTTGTACGGTCACTCAGTGCAGTACG
CAGTGTCAGTAAGTTACTGACAGTAACAAATCCTTCCTAGAAAATAAGAT
TACGTCAAAACCCCTCTGCACGACGGCTGCTAATATGAGACAAAGTGAAA
GAGAAACCAAATGCATCCTCCAACTATTGCGACTTGTCTTCTAGAAGAGA
AGCGCCACGGGAAGTTGAAATCTGTCGCTCAAAATGAAACAATGGCTTAC
TTGTGGAGAGGAAAGCCATGTATATGTGTATTATGTACTCAATACGCATA
TGCTCAATATTTCATTGAGCACTACAGCTGACAGTTGGGCAAAAGTTGGA
GAGGGACTCTACATTCAATATTTGCACTTGCGAAACGTACAAGGGTTGAG
TGCAATCATTTTTAGGAGAGGGTATTACGAGATATAATGATAACAAGAGT
GGGAGAGGGCATTCTTCTGCGTATATAAAGGCCCAGTTTGCGACGACATG
ATCGGAAGAGTTAACGCAAACAAGCAAAAGACCTATACTTCTATATCAAC
CTCTTTCAACCTTCATCAACCTCAACAAGATTCCAGAGCGAAGCAATATG
TGGGCAAAAGTGTTACGAATAGCGCTACCTCTCGCAGGCATTCTCGTGGG
ACTCCGAGTGCTTTTCCCGTCAAATTCTGTTGAAAAGGACGAAGACGAAG
AGAACAATGAACAACAAGATGGGTCGACTGTCGTGGAAGGCATAGAAAGA
GACGAGATTGCCGAACATGTGCAAAGTTGCGGTCAGGAGGTCGAAATGCA
GACACAGAATGGGTTCGCACAAGACTTAGCCCTTGTGAACTTATCTTCTG
CGACCAGTGTCTCCGCCTTATCGAACTGTCTGAACACGTCTACTGCTGGA
GAGGGTACCGGCTGTCCAGATGCAATCGCTACTCCTCATGTACCTGGAGA
TCATGGGCTTGAAACCGCTCCCAACGCTAACGGTGAAGAACATGAACAGA
GCTCTGAATGTGAGCCTGATAAAGGAGGAGTCGCCAGTGATTCCCATTCT
GCTCCGGGAACTCCCGGAGTGATGGTCGATGAGGCGCGGGTGGACGGCCT
TTGTGTTGCCATGTTCAGACATTTGCGCACAAGGCGCTGCATTGGGGAGG
TGTTTGCTCGTGTTGGTAGAGTGCAAGACACCCCTAATGAAAAACACGGC
AGGATCAAGACTCTGATCCGTCGTGGGCTGCTGTTTCCTGTAAAGGGATG
GCAAAAAAGAGTGCGTCGCACTCACAATTCGCGTGTGCGACAGCTCGCCC
TGGCGATGGGTGTTGCTCTAGACCAAGCAATGCCGTGGGTTCCGCAGCAG
TTTGAGAGAACTTGA

Coding sequence (CDS) from alignment at NODE_586_length_21355_cov_4.545758:8692..12956-

>Gcaud9599.t1 ID=Gcaud9599.t1|Name=Gcaud9599.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1548bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:8692..12956- (Gracilaria caudata M_176_S67 male)
ATGCTGCCAAATTTGTTACGATTCGTAGCGCCCATTGCAGGCTTCGTCGT
GGTAGTTAAAATTCTCCGTGAGTTGAATTCAAAACTACAATGTGACGAAG
ATGAAGACGAACATCTAGGAGAAGAGATGGAAAGGCAGGTGAAAGAGGAA
AAAAGGAACGAAGTCCATGGAGAAGTGTGTATGAGCAGTCAGGCCTCAAA
CACCCAGACATCAGATGAAATTGTTCAAGACCACAAGGTTGTCAACCTGT
CATCCGCCACAAGTTCATCTGGTGCCTCGTATTCATCACATCGTGACCGC
ACATTCGTTAGCTTATCCAAAACCTCGACCGAGGAAGGATGTGTGGACGA
ACAGCCAGATTATTCAGGTCTGTCCAATTGTCGTCATGGGAACTCTCCAG
ATTGTGAAATTCGTTGTTCTGAAGATCTCGATGAACCTACGGATGGAATA
TGCTATTCTGTAGTGACTGCTAGATGTGAATTTAATGAAACTGAAGCTAC
TGCTGCCGAAAACGAGCAAGCGTCTACAACGCGCTCAGATATTGAGCTTG
GGCAACAAGTCGCCGATGAGTCCCATCTCGTTCCCAGTAATCCCGGAGTG
ATGGTTGATAAGGCGCATGTAGACGCCCTCTGCGTCGAAATGTTCGGACA
TTTACGCAGAAGGAGATGTATTGGGATCGTATTTGCTAGAGCAGGAAATG
AAATCCCGGATGAAAAGCACGGTCGAATCAAGGCTCTAGTCACTCATGGG
CTACTGTTTCCAATTCCAGAGCGAAGCAATATGTGGGCAAAAGTGTTACG
AATAGCGCTACCTCTCGCAGGCATTCTCGTGGGACTCCGAGTGCTTTTCC
CGTCAAATTCTGTTGAAAAGGACGAAGACGAAGAGAACAATGAACAACAA
GATGGGTCGACTGTCGTGGAAGGCATAGAAAGAGACGAGATTGCCGAACA
TGTGCAAAGTTGCGGTCAGGAGGTCGAAATGCAGACACAGAATGGGTTCG
CACAAGACTTAGCCCTTGTGAACTTATCTTCTGCGACCAGTGTCTCCGCC
TTATCGAACTGTCTGAACACGTCTACTGCTGGAGAGGGTACCGGCTGTCC
AGATGCAATCGCTACTCCTCATGTACCTGGAGATCATGGGCTTGAAACCG
CTCCCAACGCTAACGGTGAAGAACATGAACAGAGCTCTGAATGTGAGCCT
GATAAAGGAGGAGTCGCCAGTGATTCCCATTCTGCTCCGGGAACTCCCGG
AGTGATGGTCGATGAGGCGCGGGTGGACGGCCTTTGTGTTGCCATGTTCA
GACATTTGCGCACAAGGCGCTGCATTGGGGAGGTGTTTGCTCGTGTTGGT
AGAGTGCAAGACACCCCTAATGAAAAACACGGCAGGATCAAGACTCTGAT
CCGTCGTGGGCTGCTGTTTCCTGTAAAGGGATGGCAAAAAAGAGTGCGTC
GCACTCACAATTCGCGTGTGCGACAGCTCGCCCTGGCGATGGGTGTTGCT
CTAGACCAAGCAATGCCGTGGGTTCCGCAGCAGTTTGAGAGAACTTGA