Gcaud9576.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9576.t1
Unique NameGcaud9576.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length811
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_247_length_34315_cov_4.656002contigNODE_247_length_34315_cov_4.656002:15811..18243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010062284.1
PFAMsCOG7
Max annot lvl35493|Streptophyta
KEGG koko:K20294
Evalue1.75e-27
EggNOG OGsKOG4182@1|root,KOG4182@2759|Eukaryota,37NHZ@33090|Viridiplantae,3GCJC@35493|Streptophyta
DescriptionConserved oligomeric Golgi complex subunit
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9576Gcaud9576Gracilaria caudata M_176_S67 malegeneNODE_247_length_34315_cov_4.656002 15811..18243 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9576.t1.stop1Gcaud9576.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_247_length_34315_cov_4.656002 15811..15813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9576.t1.CDS1Gcaud9576.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_247_length_34315_cov_4.656002 15811..18243 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9576.t1.exon1Gcaud9576.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_247_length_34315_cov_4.656002 15811..18243 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9576.t1.start1Gcaud9576.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_247_length_34315_cov_4.656002 18241..18243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9576.t1Gcaud9576.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_247_length_34315_cov_4.656002 15811..18243 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=811bp
MASVDAPLPRSHEFDLDPDSFHPSTWLNAVLSHAHASQSSPPLSQLLDAT
NDAIRDAHSTLDQSLKSSLAAIPWVVRETERVRQRATTLRTSVDGVGERV
AGVETSVVSSVKTIADADTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS
SAADGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLDEADASLEQLAK
PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRA
WSALLEDNDEGNDPGSSQILEANLCSLKSDGALQTFYDKLEDLLVAERTW
LLEAFPDLCDIVLPELVSESMRGLSPPLVVKPGDNADVNLYSVALRSIFS
SGRIGRIFLPSVVDNVLEVEEENEENRDVDDEVMLAVRDAISSLLLPYRK
FWDNFSSISTQRARKLARNIKLTALDSVSRSLQTESGADTYRPLLGLVAK
DVDRLSKEALNLLDNTLSTLTERTCGIGIDVMKRTSSAISSEFSKRIIDV
LKMPSSAQSVDEWTNMNDVLRLLTSTSILKRKWDGKKESLFAVAVGTATP
VLEVASVVQASRKRRIHQFVTQAETSPAEAGIVWELVRDSGLTNRTVSEF
EQLESTNDFKDLVDVVHRLVYESMFNGVKDRFKAFNVEDFWNVDGDDEML
ASVSSSPLSYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRV
GSVDDELSFAGMWISVLTIATMEFYVERIGSLSRLSEGGTRQLATDVDYI
CNVIASLGVSPSPEMALICKLLEAKSERASFLQAVEGYSTLDHKKLARRI
AALRGISVSL*
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spliced messenger RNA

>Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA
CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG
CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA
AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC
TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC
AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG
GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC
CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG
CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT
TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA
ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC
GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG
CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA
CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC
AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG
TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC
TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC
AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG
CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT
ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG
ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG
AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT
AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA
TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG
TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC
ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA
CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG
GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT
GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA
GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA
CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA
CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG
ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC
GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA
TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT
GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT
GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA
TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG
CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA
GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA
TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG
ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC
GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT
CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC
GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA
TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT
AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG
CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC
GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA
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protein sequence of Gcaud9576.t1

>Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=811bp
MASVDAPLPRSHEFDLDPDSFHPSTWLNAVLSHAHASQSSPPLSQLLDAT
NDAIRDAHSTLDQSLKSSLAAIPWVVRETERVRQRATTLRTSVDGVGERV
AGVETSVVSSVKTIADADTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS
SAADGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLDEADASLEQLAK
PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRA
WSALLEDNDEGNDPGSSQILEANLCSLKSDGALQTFYDKLEDLLVAERTW
LLEAFPDLCDIVLPELVSESMRGLSPPLVVKPGDNADVNLYSVALRSIFS
SGRIGRIFLPSVVDNVLEVEEENEENRDVDDEVMLAVRDAISSLLLPYRK
FWDNFSSISTQRARKLARNIKLTALDSVSRSLQTESGADTYRPLLGLVAK
DVDRLSKEALNLLDNTLSTLTERTCGIGIDVMKRTSSAISSEFSKRIIDV
LKMPSSAQSVDEWTNMNDVLRLLTSTSILKRKWDGKKESLFAVAVGTATP
VLEVASVVQASRKRRIHQFVTQAETSPAEAGIVWELVRDSGLTNRTVSEF
EQLESTNDFKDLVDVVHRLVYESMFNGVKDRFKAFNVEDFWNVDGDDEML
ASVSSSPLSYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRV
GSVDDELSFAGMWISVLTIATMEFYVERIGSLSRLSEGGTRQLATDVDYI
CNVIASLGVSPSPEMALICKLLEAKSERASFLQAVEGYSTLDHKKLARRI
AALRGISVSL*
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mRNA from alignment at NODE_247_length_34315_cov_4.656002:15811..18243-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male)
ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA
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Coding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:15811..18243-

>Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male)
ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA
CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG
CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA
AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC
TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC
AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG
GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC
CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG
CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT
TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA
ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC
GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG
CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA
CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC
AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG
TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC
TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC
AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG
CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT
ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG
ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG
AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT
AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA
TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG
TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC
ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA
CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG
GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT
GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA
GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA
CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA
CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG
ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC
GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA
TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT
GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT
GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA
TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG
CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA
GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA
TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG
ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC
GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT
CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC
GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA
TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT
AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG
CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC
GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA
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