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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 71139.XP_010062284.1 |
| PFAMs | COG7 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K20294 |
| Evalue | 1.75e-27 |
| EggNOG OGs | KOG4182@1|root,KOG4182@2759|Eukaryota,37NHZ@33090|Viridiplantae,3GCJC@35493|Streptophyta |
| Description | Conserved oligomeric Golgi complex subunit |
| COG category | S |
| BRITE | ko00000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9576.t1.stop1 | Gcaud9576.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_247_length_34315_cov_4.656002 15811..15813 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9576.t1.exon1 | Gcaud9576.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_247_length_34315_cov_4.656002 15811..18243 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9576.t1.start1 | Gcaud9576.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_247_length_34315_cov_4.656002 18241..18243 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=811bp MASVDAPLPRSHEFDLDPDSFHPSTWLNAVLSHAHASQSSPPLSQLLDAT NDAIRDAHSTLDQSLKSSLAAIPWVVRETERVRQRATTLRTSVDGVGERV AGVETSVVSSVKTIADADTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS SAADGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLDEADASLEQLAK PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRA WSALLEDNDEGNDPGSSQILEANLCSLKSDGALQTFYDKLEDLLVAERTW LLEAFPDLCDIVLPELVSESMRGLSPPLVVKPGDNADVNLYSVALRSIFS SGRIGRIFLPSVVDNVLEVEEENEENRDVDDEVMLAVRDAISSLLLPYRK FWDNFSSISTQRARKLARNIKLTALDSVSRSLQTESGADTYRPLLGLVAK DVDRLSKEALNLLDNTLSTLTERTCGIGIDVMKRTSSAISSEFSKRIIDV LKMPSSAQSVDEWTNMNDVLRLLTSTSILKRKWDGKKESLFAVAVGTATP VLEVASVVQASRKRRIHQFVTQAETSPAEAGIVWELVRDSGLTNRTVSEF EQLESTNDFKDLVDVVHRLVYESMFNGVKDRFKAFNVEDFWNVDGDDEML ASVSSSPLSYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRV GSVDDELSFAGMWISVLTIATMEFYVERIGSLSRLSEGGTRQLATDVDYI CNVIASLGVSPSPEMALICKLLEAKSERASFLQAVEGYSTLDHKKLARRI AALRGISVSL* back to topspliced messenger RNA >Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA back to topprotein sequence of Gcaud9576.t1 >Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=811bp
MASVDAPLPRSHEFDLDPDSFHPSTWLNAVLSHAHASQSSPPLSQLLDAT NDAIRDAHSTLDQSLKSSLAAIPWVVRETERVRQRATTLRTSVDGVGERV AGVETSVVSSVKTIADADTVVRRVQDTAQLLSTAVTVDTLLDRLSSLLAS SAADGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLDEADASLEQLAK PQLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRA WSALLEDNDEGNDPGSSQILEANLCSLKSDGALQTFYDKLEDLLVAERTW LLEAFPDLCDIVLPELVSESMRGLSPPLVVKPGDNADVNLYSVALRSIFS SGRIGRIFLPSVVDNVLEVEEENEENRDVDDEVMLAVRDAISSLLLPYRK FWDNFSSISTQRARKLARNIKLTALDSVSRSLQTESGADTYRPLLGLVAK DVDRLSKEALNLLDNTLSTLTERTCGIGIDVMKRTSSAISSEFSKRIIDV LKMPSSAQSVDEWTNMNDVLRLLTSTSILKRKWDGKKESLFAVAVGTATP VLEVASVVQASRKRRIHQFVTQAETSPAEAGIVWELVRDSGLTNRTVSEF EQLESTNDFKDLVDVVHRLVYESMFNGVKDRFKAFNVEDFWNVDGDDEML ASVSSSPLSYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRV GSVDDELSFAGMWISVLTIATMEFYVERIGSLSRLSEGGTRQLATDVDYI CNVIASLGVSPSPEMALICKLLEAKSERASFLQAVEGYSTLDHKKLARRI AALRGISVSL* back to topmRNA from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male) ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA
CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG
CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA
AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC
TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC
AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG
GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC
CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG
CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT
TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA
ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC
GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG
CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA
CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC
AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG
TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC
TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC
AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG
CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT
ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG
ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG
AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT
AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA
TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG
TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC
ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA
CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG
GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT
GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA
GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA
CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA
CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG
ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC
GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA
TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT
GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT
GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA
TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG
CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA
GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA
TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG
ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC
GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT
CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC
GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA
TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT
AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG
CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC
GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA back to topCoding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- >Gcaud9576.t1 ID=Gcaud9576.t1|Name=Gcaud9576.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2433bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:15811..18243- (Gracilaria caudata M_176_S67 male) ATGGCTTCGGTTGATGCTCCCCTGCCTCGATCTCATGAGTTCGACTTGGA CCCTGATTCATTCCATCCTTCAACATGGTTGAATGCTGTCTTATCTCACG CACATGCGTCTCAGAGCAGCCCTCCGTTAAGTCAGCTACTTGATGCCACA AACGATGCTATTCGAGACGCACACTCAACACTAGATCAATCTCTCAAGTC TTCTCTGGCCGCAATCCCATGGGTCGTACGGGAGACGGAGCGTGTCCGCC AACGAGCCACCACACTGCGCACCAGCGTTGATGGCGTAGGGGAAAGAGTG GCCGGCGTTGAGACTTCGGTCGTCTCTAGCGTTAAGACTATTGCCGATGC CGACACAGTTGTCCGTCGCGTGCAGGACACTGCTCAGTTGCTCAGCACTG CGGTCACTGTTGACACTCTACTAGATCGACTGTCCTCATTGTTGGCTTCT TCAGCAGCAGATGGAGCTGATCTTGTACAGGCTGCGGATCTCGTCTCTCA ACTTCGCACGTCACTGCTCCCATTGCGACAGATTTCAGAGTTTAATTCTC GAGTTACTCAACTCGATGAGGCAGATGCGTCTCTAGAGCAACTCGCAAAG CCGCAATTACAACGTGCTCTGGAACAACGCAACACATCCGCGGCACGGAA CGCACGAATAGTTTATGACCATGCGGGGCGCGAGAATGCATTCCGCACCC AATACGGTTCACTTCGTGCAGCCGAGGTTCGAAGTCTATGGTCTAGAGCG TGGTCTGCACTCTTAGAAGACAATGATGAAGGTAACGACCCGGGTAGTTC TCAAATCCTTGAGGCCAACCTTTGTTCTCTGAAATCTGATGGCGCTTTGC AGACTTTCTACGACAAGCTCGAGGATTTGCTTGTTGCGGAGCGTACATGG CTCTTAGAGGCATTCCCTGATCTCTGCGATATTGTGCTACCGGAGTTGGT ATCTGAAAGCATGCGTGGGCTTTCACCTCCGCTCGTCGTAAAACCCGGAG ATAATGCTGATGTCAATCTTTATTCGGTTGCGCTCCGCAGCATCTTCTCG AGTGGTAGAATCGGCCGCATTTTTCTACCCAGTGTTGTGGACAACGTACT AGAAGTCGAAGAAGAGAACGAGGAAAATCGGGATGTGGATGACGAAGTTA TGCTTGCTGTACGAGACGCCATTTCTTCCCTCCTACTTCCCTATCGAAAG TTCTGGGATAACTTCTCCTCAATATCCACGCAAAGGGCTCGAAAACTGGC ACGCAACATAAAGCTCACAGCTTTGGACTCTGTCAGCCGTTCGTTGCAAA CAGAATCCGGGGCAGACACATATCGTCCCCTTCTCGGACTTGTCGCCAAG GATGTGGATCGTTTGTCCAAGGAAGCCTTGAATTTGCTCGACAACACTTT GTCAACTCTAACTGAGCGTACTTGCGGGATTGGGATTGACGTTATGAAGA GAACAAGTAGTGCCATTTCGTCAGAATTTTCAAAACGGATAATTGATGTA CTTAAAATGCCATCTAGCGCGCAAAGCGTCGATGAGTGGACTAACATGAA CGATGTTCTTCGCTTGTTAACATCCACAAGTATTCTTAAGAGGAAATGGG ACGGAAAAAAAGAATCTTTGTTTGCTGTAGCCGTTGGAACCGCCACCCCC GTGTTAGAGGTTGCGTCAGTTGTGCAAGCTTCAAGGAAGAGAAGAATTCA TCAGTTTGTGACGCAGGCTGAAACAAGTCCTGCTGAAGCGGGCATCGTAT GGGAGCTGGTGCGCGATTCAGGGCTTACCAACAGAACTGTTTCTGAATTT GAACAACTGGAAAGCACTAATGATTTCAAAGATCTAGTTGATGTTGTACA TCGTCTCGTGTACGAAAGCATGTTCAACGGGGTCAAAGACCGCTTCAAAG CCTTCAATGTCGAAGACTTCTGGAATGTCGATGGCGATGATGAAATGTTA GCCAGTGTATCAAGCTCTCCCTTGTCCTACGCAACAGAAGTGGCGGACTA TCTGATGACCATTCCGCAGCAGCTCGAACCATTCATCCCTGACGAAGAAG ATGCTCGTTACGCCATGCCGAAATCACCATACGTGTTCTGCAAACGTGTC GGTAGTGTTGACGATGAGCTCTCGTTTGCGGGGATGTGGATATCGGTGCT CACCATTGCAACGATGGAGTTTTACGTCGAGAGAATAGGTAGCTTATCAC GTCTATCAGAGGGCGGAACTCGCCAGTTGGCCACGGACGTCGATTATATA TGCAATGTGATTGCGTCTCTGGGAGTATCACCTTCACCCGAAATGGCCCT AATTTGTAAGCTTCTTGAGGCGAAATCAGAAAGAGCCTCTTTCCTTCAGG CTGTGGAGGGCTACAGCACCCTGGACCACAAGAAGCTTGCTCGTCGAATC GCAGCACTAAGAGGTATTAGCGTGTCACTGTGA back to top
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