Gcaud9334.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9334.t1
Unique Name	Gcaud9334.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	297

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_199_length_38196_cov_4.525364	contig	NODE_199_length_38196_cov_4.525364:128..1018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9334	Gcaud9334	Gracilaria caudata M_176_S67 male	gene	NODE_199_length_38196_cov_4.525364 128..1018 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9334.t1.start1	Gcaud9334.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_199_length_38196_cov_4.525364 128..130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9334.t1.CDS1	Gcaud9334.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_199_length_38196_cov_4.525364 128..1018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9334.t1.exon1	Gcaud9334.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_199_length_38196_cov_4.525364 128..1018 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9334.t1.stop1	Gcaud9334.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_199_length_38196_cov_4.525364 1016..1018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9334.t1	Gcaud9334.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_199_length_38196_cov_4.525364 128..1018 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_199_length_38196_cov_4.525364:128..1018+
coding sequence from alignment at NODE_199_length_38196_cov_4.525364:128..1018+

mRNA sequence

>Gcaud9334.t1 ID=Gcaud9334.t1|Name=Gcaud9334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=297bp
MSVDVLRDTLADREAKLDVVRKKVKHAKERAARPKPKSTISNIQQRYLSA
IAEDKEKELPKAQIRSSTNAVSSLASRWNQGIDERKVQKTRVSVRGDVGA
AKKNFAHSDVPSMAKADAGRPKDVDHGPAEIVVEDGSDIPSWAKNQRKLV
IKKENARSSVHVDVKELKGSVLMNAARDGSEAERTNKVEHVGNVKAALAM
WGKTADEDAKVLAKKKEEEEKQRALEEKLRKEREAEELAKAYKEAVEAFA
KLNLADMNDEPSKEVELIAFLERKIALVEQEIKKLEDELAELEAAE*

spliced messenger RNA

>Gcaud9334.t1 ID=Gcaud9334.t1|Name=Gcaud9334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:128..1018+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTGACGTGCTGCGGGACACCCTCGCCGACCGCGAGGCAAAGCT
CGACGTCGTGCGCAAGAAGGTAAAGCACGCCAAAGAACGCGCAGCACGTC
CCAAACCAAAGTCCACCATCTCCAACATTCAGCAACGCTACCTCTCCGCC
ATCGCCGAAGACAAGGAGAAGGAGCTTCCGAAGGCACAAATACGCTCCTC
CACCAACGCCGTCTCCTCGCTCGCTAGTCGCTGGAACCAAGGCATTGACG
AGCGCAAGGTACAGAAGACAAGAGTCAGTGTACGTGGCGACGTCGGTGCC
GCCAAGAAGAACTTCGCTCACAGCGATGTGCCATCCATGGCAAAAGCGGA
TGCAGGTCGTCCAAAGGACGTCGACCACGGTCCTGCCGAGATTGTCGTCG
AAGACGGCTCTGACATCCCGAGCTGGGCAAAGAACCAGCGGAAGCTCGTC
ATCAAGAAAGAGAACGCCAGAAGCTCTGTTCATGTTGACGTCAAGGAGCT
TAAGGGAAGTGTGCTCATGAACGCTGCCAGGGACGGCTCCGAGGCCGAGC
GCACCAACAAAGTGGAGCACGTTGGAAATGTCAAGGCCGCATTGGCCATG
TGGGGAAAGACCGCCGATGAGGATGCCAAAGTGCTTGCCAAGAAGAAGGA
GGAAGAAGAGAAGCAAAGAGCACTGGAGGAGAAGCTGCGGAAAGAGCGTG
AGGCCGAGGAGCTTGCAAAAGCCTACAAGGAAGCGGTTGAAGCTTTTGCT
AAACTTAACCTCGCCGATATGAACGACGAGCCCAGCAAAGAGGTGGAGCT
CATCGCCTTCTTGGAAAGGAAGATCGCTCTAGTTGAGCAGGAAATCAAAA
AATTGGAGGACGAGCTCGCCGAATTGGAGGCCGCCGAGTGA

protein sequence of Gcaud9334.t1

>Gcaud9334.t1 ID=Gcaud9334.t1|Name=Gcaud9334.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=297bp
MSVDVLRDTLADREAKLDVVRKKVKHAKERAARPKPKSTISNIQQRYLSA
IAEDKEKELPKAQIRSSTNAVSSLASRWNQGIDERKVQKTRVSVRGDVGA
AKKNFAHSDVPSMAKADAGRPKDVDHGPAEIVVEDGSDIPSWAKNQRKLV
IKKENARSSVHVDVKELKGSVLMNAARDGSEAERTNKVEHVGNVKAALAM
WGKTADEDAKVLAKKKEEEEKQRALEEKLRKEREAEELAKAYKEAVEAFA
KLNLADMNDEPSKEVELIAFLERKIALVEQEIKKLEDELAELEAAE*

mRNA from alignment at NODE_199_length_38196_cov_4.525364:128..1018+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9334.t1 ID=Gcaud9334.t1|Name=Gcaud9334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:128..1018+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTTGACGTGCTGCGGGACACCCTCGCCGACCGCGAGGCAAAGCT
CGACGTCGTGCGCAAGAAGGTAAAGCACGCCAAAGAACGCGCAGCACGTC
CCAAACCAAAGTCCACCATCTCCAACATTCAGCAACGCTACCTCTCCGCC
ATCGCCGAAGACAAGGAGAAGGAGCTTCCGAAGGCACAAATACGCTCCTC
CACCAACGCCGTCTCCTCGCTCGCTAGTCGCTGGAACCAAGGCATTGACG
AGCGCAAGGTACAGAAGACAAGAGTCAGTGTACGTGGCGACGTCGGTGCC
GCCAAGAAGAACTTCGCTCACAGCGATGTGCCATCCATGGCAAAAGCGGA
TGCAGGTCGTCCAAAGGACGTCGACCACGGTCCTGCCGAGATTGTCGTCG
AAGACGGCTCTGACATCCCGAGCTGGGCAAAGAACCAGCGGAAGCTCGTC
ATCAAGAAAGAGAACGCCAGAAGCTCTGTTCATGTTGACGTCAAGGAGCT
TAAGGGAAGTGTGCTCATGAACGCTGCCAGGGACGGCTCCGAGGCCGAGC
GCACCAACAAAGTGGAGCACGTTGGAAATGTCAAGGCCGCATTGGCCATG
TGGGGAAAGACCGCCGATGAGGATGCCAAAGTGCTTGCCAAGAAGAAGGA
GGAAGAAGAGAAGCAAAGAGCACTGGAGGAGAAGCTGCGGAAAGAGCGTG
AGGCCGAGGAGCTTGCAAAAGCCTACAAGGAAGCGGTTGAAGCTTTTGCT
AAACTTAACCTCGCCGATATGAACGACGAGCCCAGCAAAGAGGTGGAGCT
CATCGCCTTCTTGGAAAGGAAGATCGCTCTAGTTGAGCAGGAAATCAAAA
AATTGGAGGACGAGCTCGCCGAATTGGAGGCCGCCGAGTGA

Coding sequence (CDS) from alignment at NODE_199_length_38196_cov_4.525364:128..1018+

>Gcaud9334.t1 ID=Gcaud9334.t1|Name=Gcaud9334.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=891bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:128..1018+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTTGACGTGCTGCGGGACACCCTCGCCGACCGCGAGGCAAAGCT
CGACGTCGTGCGCAAGAAGGTAAAGCACGCCAAAGAACGCGCAGCACGTC
CCAAACCAAAGTCCACCATCTCCAACATTCAGCAACGCTACCTCTCCGCC
ATCGCCGAAGACAAGGAGAAGGAGCTTCCGAAGGCACAAATACGCTCCTC
CACCAACGCCGTCTCCTCGCTCGCTAGTCGCTGGAACCAAGGCATTGACG
AGCGCAAGGTACAGAAGACAAGAGTCAGTGTACGTGGCGACGTCGGTGCC
GCCAAGAAGAACTTCGCTCACAGCGATGTGCCATCCATGGCAAAAGCGGA
TGCAGGTCGTCCAAAGGACGTCGACCACGGTCCTGCCGAGATTGTCGTCG
AAGACGGCTCTGACATCCCGAGCTGGGCAAAGAACCAGCGGAAGCTCGTC
ATCAAGAAAGAGAACGCCAGAAGCTCTGTTCATGTTGACGTCAAGGAGCT
TAAGGGAAGTGTGCTCATGAACGCTGCCAGGGACGGCTCCGAGGCCGAGC
GCACCAACAAAGTGGAGCACGTTGGAAATGTCAAGGCCGCATTGGCCATG
TGGGGAAAGACCGCCGATGAGGATGCCAAAGTGCTTGCCAAGAAGAAGGA
GGAAGAAGAGAAGCAAAGAGCACTGGAGGAGAAGCTGCGGAAAGAGCGTG
AGGCCGAGGAGCTTGCAAAAGCCTACAAGGAAGCGGTTGAAGCTTTTGCT
AAACTTAACCTCGCCGATATGAACGACGAGCCCAGCAAAGAGGTGGAGCT
CATCGCCTTCTTGGAAAGGAAGATCGCTCTAGTTGAGCAGGAAATCAAAA
AATTGGAGGACGAGCTCGCCGAATTGGAGGCCGCCGAGTGA