Gcaud9331.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9331.t1
Unique NameGcaud9331.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2256_length_6289_cov_4.364472contigNODE_2256_length_6289_cov_4.364472:1321..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9331Gcaud9331Gracilaria caudata M_176_S67 malegeneNODE_2256_length_6289_cov_4.364472 1321..2085 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9331.t1.start1Gcaud9331.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2256_length_6289_cov_4.364472 1321..1323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9331.t1.CDS1Gcaud9331.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2256_length_6289_cov_4.364472 1321..2085 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9331.t1.exon1Gcaud9331.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2256_length_6289_cov_4.364472 1321..2085 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9331.t1.stop1Gcaud9331.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2256_length_6289_cov_4.364472 2083..2085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9331.t1Gcaud9331.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2256_length_6289_cov_4.364472 1321..2085 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVF
LSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIR
RRRLIAPLFARLCILVVSIGSIALALPSEKRLDACSRGDYTVVQAPSSGR
PVVLDSQELFEVCTPIPLETRLGTVRSSASYCSFASTPLDLPLFSEAATL
LLNAPEAAFAGAAYLNSSGLLRSFLITNDRIEMIDSFVEWKTKKGDRYHS
LLPF*
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spliced messenger RNA

>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:1321..2085+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATCACTGATGCAATTGACGTCACTCCGCAGTCCACCCTATCCAC
TATTCAGTTTCATAGTGAGGTTCTCAACACCATCATCACTTCTCTGCTCA
CAACGTTGGTGATAGCCAACTTGGTAAGCGTCATCAACCGATTGGTGTTC
CTATCTCGTCATGACGTCTTCAGCTATCGTGCTTTTGCCCGCTCATATGT
TTTCCTCAACTCGGATGATCCGCTGCGACTCTGGTACTGGCTTCGGGGTG
GATACGAGTTTCGCACCAACAACGAACCTCCACCTCAACATTGCATACGT
AGACGCCGTCTCATCGCGCCTCTGTTCGCGCGTCTGTGCATCTTGGTCGT
CAGTATTGGTTCCATTGCATTAGCTTTGCCCTCTGAAAAACGTCTTGACG
CGTGCAGTCGTGGCGACTATACCGTTGTTCAAGCACCGTCTAGCGGACGC
CCCGTTGTTCTCGACAGTCAAGAATTGTTTGAAGTATGCACCCCAATTCC
ACTCGAGACACGCCTTGGAACAGTAAGGTCTTCTGCTTCTTACTGCTCTT
TTGCGAGCACACCCCTTGACTTACCTCTTTTCTCCGAAGCCGCAACTCTG
TTATTGAACGCACCAGAGGCAGCTTTTGCTGGAGCCGCTTATCTCAATTC
TAGTGGTCTCCTCAGATCCTTCCTAATCACCAATGACAGAATAGAAATGA
TTGATTCGTTCGTAGAATGGAAGACTAAGAAGGGCGACAGATATCATTCT
CTGCTACCCTTCTGA
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protein sequence of Gcaud9331.t1

>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVF
LSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIR
RRRLIAPLFARLCILVVSIGSIALALPSEKRLDACSRGDYTVVQAPSSGR
PVVLDSQELFEVCTPIPLETRLGTVRSSASYCSFASTPLDLPLFSEAATL
LLNAPEAAFAGAAYLNSSGLLRSFLITNDRIEMIDSFVEWKTKKGDRYHS
LLPF*
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mRNA from alignment at NODE_2256_length_6289_cov_4.364472:1321..2085+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:1321..2085+ (Gracilaria caudata M_176_S67 male)
ATGCCCATCACTGATGCAATTGACGTCACTCCGCAGTCCACCCTATCCAC
TATTCAGTTTCATAGTGAGGTTCTCAACACCATCATCACTTCTCTGCTCA
CAACGTTGGTGATAGCCAACTTGGTAAGCGTCATCAACCGATTGGTGTTC
CTATCTCGTCATGACGTCTTCAGCTATCGTGCTTTTGCCCGCTCATATGT
TTTCCTCAACTCGGATGATCCGCTGCGACTCTGGTACTGGCTTCGGGGTG
GATACGAGTTTCGCACCAACAACGAACCTCCACCTCAACATTGCATACGT
AGACGCCGTCTCATCGCGCCTCTGTTCGCGCGTCTGTGCATCTTGGTCGT
CAGTATTGGTTCCATTGCATTAGCTTTGCCCTCTGAAAAACGTCTTGACG
CGTGCAGTCGTGGCGACTATACCGTTGTTCAAGCACCGTCTAGCGGACGC
CCCGTTGTTCTCGACAGTCAAGAATTGTTTGAAGTATGCACCCCAATTCC
ACTCGAGACACGCCTTGGAACAGTAAGGTCTTCTGCTTCTTACTGCTCTT
TTGCGAGCACACCCCTTGACTTACCTCTTTTCTCCGAAGCCGCAACTCTG
TTATTGAACGCACCAGAGGCAGCTTTTGCTGGAGCCGCTTATCTCAATTC
TAGTGGTCTCCTCAGATCCTTCCTAATCACCAATGACAGAATAGAAATGA
TTGATTCGTTCGTAGAATGGAAGACTAAGAAGGGCGACAGATATCATTCT
CTGCTACCCTTCTGA
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Coding sequence (CDS) from alignment at NODE_2256_length_6289_cov_4.364472:1321..2085+

>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:1321..2085+ (Gracilaria caudata M_176_S67 male)
ATGCCCATCACTGATGCAATTGACGTCACTCCGCAGTCCACCCTATCCAC
TATTCAGTTTCATAGTGAGGTTCTCAACACCATCATCACTTCTCTGCTCA
CAACGTTGGTGATAGCCAACTTGGTAAGCGTCATCAACCGATTGGTGTTC
CTATCTCGTCATGACGTCTTCAGCTATCGTGCTTTTGCCCGCTCATATGT
TTTCCTCAACTCGGATGATCCGCTGCGACTCTGGTACTGGCTTCGGGGTG
GATACGAGTTTCGCACCAACAACGAACCTCCACCTCAACATTGCATACGT
AGACGCCGTCTCATCGCGCCTCTGTTCGCGCGTCTGTGCATCTTGGTCGT
CAGTATTGGTTCCATTGCATTAGCTTTGCCCTCTGAAAAACGTCTTGACG
CGTGCAGTCGTGGCGACTATACCGTTGTTCAAGCACCGTCTAGCGGACGC
CCCGTTGTTCTCGACAGTCAAGAATTGTTTGAAGTATGCACCCCAATTCC
ACTCGAGACACGCCTTGGAACAGTAAGGTCTTCTGCTTCTTACTGCTCTT
TTGCGAGCACACCCCTTGACTTACCTCTTTTCTCCGAAGCCGCAACTCTG
TTATTGAACGCACCAGAGGCAGCTTTTGCTGGAGCCGCTTATCTCAATTC
TAGTGGTCTCCTCAGATCCTTCCTAATCACCAATGACAGAATAGAAATGA
TTGATTCGTTCGTAGAATGGAAGACTAAGAAGGGCGACAGATATCATTCT
CTGCTACCCTTCTGA
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