Gcaud9331.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9331.t1
Unique Name	Gcaud9331.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	255

Homology

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BLAST of Gcaud9331.t1 vs. uniprot
Match: R7QI75_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI75_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 1.450e-38
Identity = 77/183 (42.08%), Postives = 119/183 (65.03%), Query Frame = 0

Query:    1 MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVFLSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIRRRRLIAPLFARLCILVVSIGSIALALPSEKRLDACSRGDYTVVQAPSSGRPVVLDSQELFEVCTPIPLETRLGTVRSSASYCS 183
            M +   ++ TP  + ST+Q  S+++N +I SLLT  VI+N++SV ++L+F SR   F Y ++ RS++F+NSDDP+R++ W+   Y ++       ++ I+ RRL+ PL ARL ILV +I S+A+++PSEKRL  C +GD+ +   P+  +P    + +L  VC  IPL T LG VRS  SYCS
Sbjct:    1 MTLLQELNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP----APDLNRVCADIPLTTTLGEVRSRVSYCS 179

[Close]

BLAST of Gcaud9331.t1 vs. uniprot
Match: R7QQN3_CHOCR (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QQN3_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 1.610e-36
Identity = 77/183 (42.08%), Postives = 119/183 (65.03%), Query Frame = 0

Query:    1 MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVFLSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIRRRRLIAPLFARLCILVVSIGSIALALPSEKRLDACSRGDYTVVQAPSSGRPVVLDSQELFEVCTPIPLETRLGTVRSSASYCS 183
            M +   ++ TP  + ST+Q  S+++N +I SLLT  VI+N++SV ++L+F SR   F Y ++ RS++F+NSDDP+R++ W+   Y ++       ++ I+ RRL+ PL ARL ILV +I S+A+++PSEKRL  C +GD+ +   P+  +P    + +L  VC  IPL T LG VRS  SYCS
Sbjct:    1 MTLLQELNATPDFSFSTVQTSSDIINALIISLLTVFVISNILSVTSKLIFSSREKSFEYLSWVRSFIFVNSDDPIRIFSWIWHRYSYKEKGCTRYRNEIQLRRLLLPLLARLFILVTAITSVAISIPSEKRLSGCEKGDFRIHMDPNVRKP----APDLNRVCADIPLTTTLGEVRSRVSYCS 179

[Close]

BLAST of Gcaud9331.t1 vs. uniprot
Match: A0A2V3II47_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II47_9FLOR)

HSP 1 Score: 91.7 bits (226), Expect = 1.130e-17
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 0

Query:    1 MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVFLSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIRRRRLIAPLFAR 111
            M I + +   P  TLSTIQF S+ LN+I+ +L+TT++IAN  S++N+LV +S+ DVFS+ ++ R++VF NSDDP   +  LRG Y F   N    Q  +R++ LI PLFAR
Sbjct:   22 MSIEEGLKFNPNLTLSTIQFSSDNLNSIVAALITTIIIANPQSIVNKLVAVSKQDVFSFNSYRRAFVFANSDDPSLGFSCLRGRYGFGFGNGSHTQLKLRKKLLIVPLFAR 132

The following BLAST results are available for this feature:

BLAST of Gcaud9331.t1 vs. uniprot

BLAST of Gcaud9331.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
R7QI75_CHOCR	1.450e-38	42.08	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7QQN3_CHOCR	1.610e-36	42.08	Uncharacterized protein n=3 Tax=Chondrus crispus T...	[more]
A0A2V3II47_9FLOR	1.130e-17	46.85	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 51..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..126
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 127..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 28..50
None	No IPR available	TMHMM	TMhelix		coord: 28..50
None	No IPR available	TMHMM	TMhelix		coord: 104..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2256_length_6289_cov_4.364472	contig	NODE_2256_length_6289_cov_4.364472:1321..2085 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9331.t1	Gcaud9331.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2256_length_6289_cov_4.364472 1321..2085 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9331.t1 ID=Gcaud9331.t1|Name=Gcaud9331.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MPITDAIDVTPQSTLSTIQFHSEVLNTIITSLLTTLVIANLVSVINRLVF
LSRHDVFSYRAFARSYVFLNSDDPLRLWYWLRGGYEFRTNNEPPPQHCIR
RRRLIAPLFARLCILVVSIGSIALALPSEKRLDACSRGDYTVVQAPSSGR
PVVLDSQELFEVCTPIPLETRLGTVRSSASYCSFASTPLDLPLFSEAATL
LLNAPEAAFAGAAYLNSSGLLRSFLITNDRIEMIDSFVEWKTKKGDRYHS
LLPF*