Gcaud9329.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9329.t1
Unique NameGcaud9329.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_989_length_15443_cov_4.322564contigNODE_989_length_15443_cov_4.322564:6907..7629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP04513
PFAMsPAP_fibrillin
Max annot lvl3041|Chlorophyta
Evalue7.73e-44
EggNOG OGs28JF0@1|root,2QRU1@2759|Eukaryota,37IIC@33090|Viridiplantae,34MME@3041|Chlorophyta
DescriptionPAP_fibrillin
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9329Gcaud9329Gracilaria caudata M_176_S67 malegeneNODE_989_length_15443_cov_4.322564 6907..7629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9329.t1.stop1Gcaud9329.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_989_length_15443_cov_4.322564 6907..6909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9329.t1.CDS1Gcaud9329.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_989_length_15443_cov_4.322564 6907..7629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9329.t1.exon1Gcaud9329.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_989_length_15443_cov_4.322564 6907..7629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9329.t1.start1Gcaud9329.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_989_length_15443_cov_4.322564 7627..7629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9329.t1Gcaud9329.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_989_length_15443_cov_4.322564 6907..7629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9329.t1 ID=Gcaud9329.t1|Name=Gcaud9329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=241bp
MFILPFSGSQNNATLKQDSIIESSRCKLYQRSFRSKGVVRCSAAATGVAN
LRQEIESIAGRERGIFGLQEEERNRLESLITDLERNNPNPCPTSNDAEAA
HGSWRLLYTTLQILGKKRVRLAISSPRKPGLVKLGSFFQLIDSSKRESKN
VIEFKVLTGTSGTFTITAKYDVVSPKRVNVSTVATALEPSSFEALLGSNM
QLLTQIFNPDGYLDITYLDDSFRIGRDNKGHVFVLERAEA*
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spliced messenger RNA

>Gcaud9329.t1 ID=Gcaud9329.t1|Name=Gcaud9329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:6907..7629- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATCCTTCCCTTTTCTGGCTCTCAGAACAATGCGACGCTGAAACA
GGATTCGATCATTGAAAGCTCCAGATGTAAGCTATATCAGAGAAGCTTTC
GTAGCAAAGGAGTGGTGCGCTGCTCAGCGGCTGCGACTGGGGTGGCCAAC
TTGAGGCAAGAAATCGAGTCAATTGCGGGAAGAGAACGAGGTATATTTGG
ACTTCAGGAGGAGGAGCGTAATAGGCTTGAATCGTTGATTACGGACCTGG
AAAGGAACAATCCGAATCCCTGCCCCACGTCGAACGATGCTGAGGCCGCC
CATGGTTCATGGCGTTTGCTCTACACAACGTTGCAGATTCTAGGAAAGAA
GAGAGTCCGACTCGCGATTTCCTCACCTCGAAAGCCGGGCCTGGTTAAAC
TCGGTAGCTTTTTTCAGTTGATTGACTCTTCGAAGCGCGAAAGCAAGAAC
GTCATTGAATTCAAAGTTTTGACAGGAACATCGGGAACGTTTACCATCAC
AGCAAAGTATGACGTGGTCAGTCCAAAGCGAGTGAATGTATCGACTGTAG
CAACCGCATTAGAGCCATCTTCGTTTGAAGCTTTGCTTGGGTCGAACATG
CAGCTATTGACGCAAATTTTCAACCCTGATGGATATCTTGATATTACATA
CTTGGATGATTCCTTTAGGATTGGGAGAGATAACAAGGGTCACGTGTTTG
TTTTGGAGAGAGCGGAAGCGTAG
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protein sequence of Gcaud9329.t1

>Gcaud9329.t1 ID=Gcaud9329.t1|Name=Gcaud9329.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MFILPFSGSQNNATLKQDSIIESSRCKLYQRSFRSKGVVRCSAAATGVAN
LRQEIESIAGRERGIFGLQEEERNRLESLITDLERNNPNPCPTSNDAEAA
HGSWRLLYTTLQILGKKRVRLAISSPRKPGLVKLGSFFQLIDSSKRESKN
VIEFKVLTGTSGTFTITAKYDVVSPKRVNVSTVATALEPSSFEALLGSNM
QLLTQIFNPDGYLDITYLDDSFRIGRDNKGHVFVLERAEA*
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mRNA from alignment at NODE_989_length_15443_cov_4.322564:6907..7629-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9329.t1 ID=Gcaud9329.t1|Name=Gcaud9329.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:6907..7629- (Gracilaria caudata M_176_S67 male)
ATGTTCATCCTTCCCTTTTCTGGCTCTCAGAACAATGCGACGCTGAAACA
GGATTCGATCATTGAAAGCTCCAGATGTAAGCTATATCAGAGAAGCTTTC
GTAGCAAAGGAGTGGTGCGCTGCTCAGCGGCTGCGACTGGGGTGGCCAAC
TTGAGGCAAGAAATCGAGTCAATTGCGGGAAGAGAACGAGGTATATTTGG
ACTTCAGGAGGAGGAGCGTAATAGGCTTGAATCGTTGATTACGGACCTGG
AAAGGAACAATCCGAATCCCTGCCCCACGTCGAACGATGCTGAGGCCGCC
CATGGTTCATGGCGTTTGCTCTACACAACGTTGCAGATTCTAGGAAAGAA
GAGAGTCCGACTCGCGATTTCCTCACCTCGAAAGCCGGGCCTGGTTAAAC
TCGGTAGCTTTTTTCAGTTGATTGACTCTTCGAAGCGCGAAAGCAAGAAC
GTCATTGAATTCAAAGTTTTGACAGGAACATCGGGAACGTTTACCATCAC
AGCAAAGTATGACGTGGTCAGTCCAAAGCGAGTGAATGTATCGACTGTAG
CAACCGCATTAGAGCCATCTTCGTTTGAAGCTTTGCTTGGGTCGAACATG
CAGCTATTGACGCAAATTTTCAACCCTGATGGATATCTTGATATTACATA
CTTGGATGATTCCTTTAGGATTGGGAGAGATAACAAGGGTCACGTGTTTG
TTTTGGAGAGAGCGGAAGCGTAG
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Coding sequence (CDS) from alignment at NODE_989_length_15443_cov_4.322564:6907..7629-

>Gcaud9329.t1 ID=Gcaud9329.t1|Name=Gcaud9329.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=723bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:6907..7629- (Gracilaria caudata M_176_S67 male)
ATGTTCATCCTTCCCTTTTCTGGCTCTCAGAACAATGCGACGCTGAAACA
GGATTCGATCATTGAAAGCTCCAGATGTAAGCTATATCAGAGAAGCTTTC
GTAGCAAAGGAGTGGTGCGCTGCTCAGCGGCTGCGACTGGGGTGGCCAAC
TTGAGGCAAGAAATCGAGTCAATTGCGGGAAGAGAACGAGGTATATTTGG
ACTTCAGGAGGAGGAGCGTAATAGGCTTGAATCGTTGATTACGGACCTGG
AAAGGAACAATCCGAATCCCTGCCCCACGTCGAACGATGCTGAGGCCGCC
CATGGTTCATGGCGTTTGCTCTACACAACGTTGCAGATTCTAGGAAAGAA
GAGAGTCCGACTCGCGATTTCCTCACCTCGAAAGCCGGGCCTGGTTAAAC
TCGGTAGCTTTTTTCAGTTGATTGACTCTTCGAAGCGCGAAAGCAAGAAC
GTCATTGAATTCAAAGTTTTGACAGGAACATCGGGAACGTTTACCATCAC
AGCAAAGTATGACGTGGTCAGTCCAAAGCGAGTGAATGTATCGACTGTAG
CAACCGCATTAGAGCCATCTTCGTTTGAAGCTTTGCTTGGGTCGAACATG
CAGCTATTGACGCAAATTTTCAACCCTGATGGATATCTTGATATTACATA
CTTGGATGATTCCTTTAGGATTGGGAGAGATAACAAGGGTCACGTGTTTG
TTTTGGAGAGAGCGGAAGCGTAG
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