Gcaud9325.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9325.t1
Unique Name	Gcaud9325.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	403

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_987_length_15461_cov_4.727716	contig	NODE_987_length_15461_cov_4.727716:4361..5569 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9325	Gcaud9325	Gracilaria caudata M_176_S67 male	gene	NODE_987_length_15461_cov_4.727716 4361..5569 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9325.t1.stop1	Gcaud9325.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_987_length_15461_cov_4.727716 4361..4363 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9325.t1.CDS1	Gcaud9325.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_987_length_15461_cov_4.727716 4361..5569 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9325.t1.exon1	Gcaud9325.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_987_length_15461_cov_4.727716 4361..5569 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9325.t1.start1	Gcaud9325.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_987_length_15461_cov_4.727716 5567..5569 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9325.t1	Gcaud9325.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_987_length_15461_cov_4.727716 4361..5569 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_987_length_15461_cov_4.727716:4361..5569-
coding sequence from alignment at NODE_987_length_15461_cov_4.727716:4361..5569-

mRNA sequence

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=403bp
MGFVSAFSNAALVRRRSNATFALLCIQGAVCVIILALKISAPSGIVDSRT
FHVDWNHTVRGEAFCRKKGRNLAVTRIGEALQKLQTHFESRGGILSVGRT
GKNPDALIVEDDEFSLGPTYVVDEFKLSTGLKISVPVSDEPVSFDTSAFT
RQTGFEVKYQKASFNEVDFTDTGDQITVGPLYIMQFFSPRSPNSSQKFEM
YSFARCYVRRLKLSQGTSKVVRGKCMVSNLGRDTTKNGNWQSISTQPAIL
GELEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSER
SIIIVCTLGGIAVGGCVAVICSLFITRGTFDWNGSYQRVINLAANSDSVG
LGSCWEISEASKADVVVENWNDNEETIRYDVHVTQDNAFSNPVPRASIKL
IR*

spliced messenger RNA

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_987_length_15461_cov_4.727716:4361..5569- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTTGTTTCAGCTTTTTCCAATGCCGCTCTCGTTCGCAGGCGCTC
CAATGCAACTTTCGCCTTGTTGTGTATTCAGGGTGCAGTATGCGTTATCA
TTCTGGCTCTGAAGATTTCAGCTCCAAGTGGAATAGTCGATTCGAGAACT
TTCCACGTTGACTGGAATCATACTGTGCGAGGAGAAGCCTTTTGCCGAAA
GAAGGGAAGAAATCTTGCTGTAACTAGAATAGGCGAAGCACTGCAGAAAC
TTCAAACACATTTTGAATCACGGGGAGGCATTTTAAGCGTCGGAAGGACA
GGAAAGAACCCTGATGCGCTTATTGTAGAAGATGACGAGTTCAGCTTAGG
CCCCACATATGTAGTCGATGAGTTTAAGCTCTCAACAGGACTGAAAATTT
CGGTACCCGTATCAGATGAGCCGGTAAGCTTTGATACTTCTGCTTTCACC
AGACAAACAGGCTTTGAGGTGAAGTATCAAAAAGCTTCGTTCAACGAAGT
GGACTTTACAGATACTGGGGATCAAATCACAGTTGGTCCATTGTATATTA
TGCAATTCTTCAGTCCTCGTTCGCCAAATTCTTCACAGAAGTTTGAAATG
TATTCTTTCGCCAGGTGTTATGTACGTCGACTGAAATTGTCGCAAGGCAC
ATCAAAGGTGGTGAGAGGAAAATGCATGGTTTCAAATCTTGGAAGAGATA
CTACCAAAAACGGAAACTGGCAATCTATATCGACACAGCCGGCAATTCTT
GGGGAGCTGGAAGGAACTTACTCAGGGCTGAATATTTCAGAACTAGGAAA
GAGATGGATCATGGTTTATGATTTGGCGAATGCTTTGAGTCGAGAGCCTT
GTGGTGACTCATATGTGGCATATCGCCCATGGTCCAAGGTCTCAGAAAGA
TCCATCATCATTGTATGCACTCTAGGGGGTATTGCCGTCGGCGGCTGTGT
AGCAGTCATATGCTCTCTTTTCATCACAAGAGGAACTTTTGATTGGAATG
GATCTTATCAAAGGGTAATCAACCTCGCAGCAAATTCGGATTCAGTGGGA
CTCGGGAGCTGCTGGGAGATATCTGAAGCTTCCAAAGCAGACGTCGTCGT
TGAGAATTGGAATGATAACGAAGAAACAATAAGGTATGATGTTCATGTCA
CTCAAGACAATGCTTTTTCGAATCCTGTGCCAAGGGCAAGCATCAAGTTG
ATTCGATAA

protein sequence of Gcaud9325.t1

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MGFVSAFSNAALVRRRSNATFALLCIQGAVCVIILALKISAPSGIVDSRT
FHVDWNHTVRGEAFCRKKGRNLAVTRIGEALQKLQTHFESRGGILSVGRT
GKNPDALIVEDDEFSLGPTYVVDEFKLSTGLKISVPVSDEPVSFDTSAFT
RQTGFEVKYQKASFNEVDFTDTGDQITVGPLYIMQFFSPRSPNSSQKFEM
YSFARCYVRRLKLSQGTSKVVRGKCMVSNLGRDTTKNGNWQSISTQPAIL
GELEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSER
SIIIVCTLGGIAVGGCVAVICSLFITRGTFDWNGSYQRVINLAANSDSVG
LGSCWEISEASKADVVVENWNDNEETIRYDVHVTQDNAFSNPVPRASIKL
IR*

mRNA from alignment at NODE_987_length_15461_cov_4.727716:4361..5569-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_987_length_15461_cov_4.727716:4361..5569- (Gracilaria caudata M_176_S67 male)
ATGGGTTTTGTTTCAGCTTTTTCCAATGCCGCTCTCGTTCGCAGGCGCTC
CAATGCAACTTTCGCCTTGTTGTGTATTCAGGGTGCAGTATGCGTTATCA
TTCTGGCTCTGAAGATTTCAGCTCCAAGTGGAATAGTCGATTCGAGAACT
TTCCACGTTGACTGGAATCATACTGTGCGAGGAGAAGCCTTTTGCCGAAA
GAAGGGAAGAAATCTTGCTGTAACTAGAATAGGCGAAGCACTGCAGAAAC
TTCAAACACATTTTGAATCACGGGGAGGCATTTTAAGCGTCGGAAGGACA
GGAAAGAACCCTGATGCGCTTATTGTAGAAGATGACGAGTTCAGCTTAGG
CCCCACATATGTAGTCGATGAGTTTAAGCTCTCAACAGGACTGAAAATTT
CGGTACCCGTATCAGATGAGCCGGTAAGCTTTGATACTTCTGCTTTCACC
AGACAAACAGGCTTTGAGGTGAAGTATCAAAAAGCTTCGTTCAACGAAGT
GGACTTTACAGATACTGGGGATCAAATCACAGTTGGTCCATTGTATATTA
TGCAATTCTTCAGTCCTCGTTCGCCAAATTCTTCACAGAAGTTTGAAATG
TATTCTTTCGCCAGGTGTTATGTACGTCGACTGAAATTGTCGCAAGGCAC
ATCAAAGGTGGTGAGAGGAAAATGCATGGTTTCAAATCTTGGAAGAGATA
CTACCAAAAACGGAAACTGGCAATCTATATCGACACAGCCGGCAATTCTT
GGGGAGCTGGAAGGAACTTACTCAGGGCTGAATATTTCAGAACTAGGAAA
GAGATGGATCATGGTTTATGATTTGGCGAATGCTTTGAGTCGAGAGCCTT
GTGGTGACTCATATGTGGCATATCGCCCATGGTCCAAGGTCTCAGAAAGA
TCCATCATCATTGTATGCACTCTAGGGGGTATTGCCGTCGGCGGCTGTGT
AGCAGTCATATGCTCTCTTTTCATCACAAGAGGAACTTTTGATTGGAATG
GATCTTATCAAAGGGTAATCAACCTCGCAGCAAATTCGGATTCAGTGGGA
CTCGGGAGCTGCTGGGAGATATCTGAAGCTTCCAAAGCAGACGTCGTCGT
TGAGAATTGGAATGATAACGAAGAAACAATAAGGTATGATGTTCATGTCA
CTCAAGACAATGCTTTTTCGAATCCTGTGCCAAGGGCAAGCATCAAGTTG
ATTCGATAA

Coding sequence (CDS) from alignment at NODE_987_length_15461_cov_4.727716:4361..5569-

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1209bp|location=Sequence derived from alignment at NODE_987_length_15461_cov_4.727716:4361..5569- (Gracilaria caudata M_176_S67 male)
ATGGGTTTTGTTTCAGCTTTTTCCAATGCCGCTCTCGTTCGCAGGCGCTC
CAATGCAACTTTCGCCTTGTTGTGTATTCAGGGTGCAGTATGCGTTATCA
TTCTGGCTCTGAAGATTTCAGCTCCAAGTGGAATAGTCGATTCGAGAACT
TTCCACGTTGACTGGAATCATACTGTGCGAGGAGAAGCCTTTTGCCGAAA
GAAGGGAAGAAATCTTGCTGTAACTAGAATAGGCGAAGCACTGCAGAAAC
TTCAAACACATTTTGAATCACGGGGAGGCATTTTAAGCGTCGGAAGGACA
GGAAAGAACCCTGATGCGCTTATTGTAGAAGATGACGAGTTCAGCTTAGG
CCCCACATATGTAGTCGATGAGTTTAAGCTCTCAACAGGACTGAAAATTT
CGGTACCCGTATCAGATGAGCCGGTAAGCTTTGATACTTCTGCTTTCACC
AGACAAACAGGCTTTGAGGTGAAGTATCAAAAAGCTTCGTTCAACGAAGT
GGACTTTACAGATACTGGGGATCAAATCACAGTTGGTCCATTGTATATTA
TGCAATTCTTCAGTCCTCGTTCGCCAAATTCTTCACAGAAGTTTGAAATG
TATTCTTTCGCCAGGTGTTATGTACGTCGACTGAAATTGTCGCAAGGCAC
ATCAAAGGTGGTGAGAGGAAAATGCATGGTTTCAAATCTTGGAAGAGATA
CTACCAAAAACGGAAACTGGCAATCTATATCGACACAGCCGGCAATTCTT
GGGGAGCTGGAAGGAACTTACTCAGGGCTGAATATTTCAGAACTAGGAAA
GAGATGGATCATGGTTTATGATTTGGCGAATGCTTTGAGTCGAGAGCCTT
GTGGTGACTCATATGTGGCATATCGCCCATGGTCCAAGGTCTCAGAAAGA
TCCATCATCATTGTATGCACTCTAGGGGGTATTGCCGTCGGCGGCTGTGT
AGCAGTCATATGCTCTCTTTTCATCACAAGAGGAACTTTTGATTGGAATG
GATCTTATCAAAGGGTAATCAACCTCGCAGCAAATTCGGATTCAGTGGGA
CTCGGGAGCTGCTGGGAGATATCTGAAGCTTCCAAAGCAGACGTCGTCGT
TGAGAATTGGAATGATAACGAAGAAACAATAAGGTATGATGTTCATGTCA
CTCAAGACAATGCTTTTTCGAATCCTGTGCCAAGGGCAAGCATCAAGTTG
ATTCGATAA