Gcaud9325.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9325.t1
Unique NameGcaud9325.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length403
Homology
BLAST of Gcaud9325.t1 vs. uniprot
Match: A0A2V3IL84_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL84_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 4.100e-56
Identity = 120/320 (37.50%), Postives = 183/320 (57.19%), Query Frame = 0
Query:   87 HFESRGGILSVGRTGKNPDALIVEDDEFSLGPTYVVDEFKLSTGLKISVPVSDEPVSFDTSAFTRQTGFEVKYQKASFNEVDFTDT---GDQITVGPLY-IMQFFSPRSPNSSQKFEMYSFARCYVRRLKLSQGTSKVVRGKCMVSNLGRDTTKNGNWQSISTQPAILGELEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSERSIIIVCTLGGIAVGGCVAVICSLFITRGTFDWNGSYQRVINLAANSDSVGLGSCWEISEASKADVVVENWNDNEETIRYDVHVTQDNAFSNPVPRASIKLIR 402
            HF + G IL VGRTG+N DAL+VED+E+S G  +++ E  +   + +S P  +  V  +   F   T    +   A ++ +    T     QIT GPLY ++  F     + ++ +   +F +C V R+ L     ++VRG C V+ L R T K+G ++    + + L  L+  +  +++S LG+  IM+ DLA  L  +PCGD+YVAY P S +S  S++IVC LG  A+  CVA I SLFITR TF+WNGSYQRV++LAA+S+ + +    + +  + ADVV+E            V +   +A SNPVP+AS KL++
Sbjct:    2 HFNTGGKILRVGRTGQNLDALLVEDEEYSHGHAHLLKESFIEAKINVSSPRGNYKVDINAWDFLENTTGYPEDLTAHYSTIVRNATYLPTIQITEGPLYFVICIFG----HGTENYMKCAFGKCAVPRVDLPYSRFRLVRGNCSVAFLERSTAKSGIFRGFEPEASSLRYLDLAFGHVDVSFLGQGSIMINDLAITLQSKPCGDTYVAYLPPSNISRTSVVIVCALGITALASCVAAIMSLFITRHTFNWNGSYQRVVSLAASSEQMRVFGRNDFAAVATADVVIEE-RPTHHGKGLCVRIVPTDATSNPVPKASRKLLQ 316          
BLAST of Gcaud9325.t1 vs. uniprot
Match: A0A2V3J1R8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R8_9FLOR)

HSP 1 Score: 167 bits (424), Expect = 2.140e-44
Identity = 121/344 (35.17%), Postives = 178/344 (51.74%), Query Frame = 0
Query:    1 MGFVSAFSNAALVRRRSNATFALLCIQGAVCVIILALKISAPSGIVDSRTFHVDWNHTVRGEAFCRKKGRNLAVTRIGEALQKLQTHFESRGGILSVGRTGKNPDALIVEDDEFSLGPTYVVDEFKLSTGLKISVPVSDEPVSFDT---SAFTRQT----------GFEVKYQKASFNEVDFTDTGDQITVGPLYIMQFFSPRSPNSSQKFEMYSFARCYVRRLKLSQGTSKVVRGKCMVSNLGRDTTKNGNWQSISTQPAILGELEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSERSIIIVCTLGGIAVGGCVAVICSLFITRGTFD 331
            M F  AF +   +R+ S     LL IQ  +   +  L   AP GI +S+   V   HT+ GEA C ++G   +   IG A +++  HF + G ++SVG+TG+N DA+++E++  SLG   VVD++ +   +     VSD  +S  T   + F R T           F + +     N     + G  I  GP Y++        N + K E  +F+RC V  ++L  G    VRG C V+ + R   K G ++S     + L  L+ ++ GL++SELGKR  MV DLA  L   PCGD+YVAY P S+VS  SI I+C+LG I++   V  I S  ITR TF+
Sbjct:   56 MSFGGAFLSLVRLRQSSARVVILLIIQTIILAFLRTLMSLAPIGISESKNLSVHRYHTIPGEALCYREGLYNSEM-IGMATERVIKHFNAGGKVISVGKTGRNHDAILLENERSSLGHAVVVDKWDMEARIN----VSDGNISTFTLNLTQFLRNTTGYLHSVYSNDFFLTHSVVPMNTTPLPNNG-AIVDGPFYVIVCTHNPLVNEN-KMEKCAFSRCAVPHVELQPGEVVSVRGNCSVATIERQAFKAGAFRSYYGSASPLKYLDISFKGLDVSELGKRSQMVGDLAFILRSRPCGDTYVAYLPPSEVSWVSIAIICSLGTISLVVSVVAIMSFSITRNTFN 392          
BLAST of Gcaud9325.t1 vs. uniprot
Match: A0A2V3IYY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYY8_9FLOR)

HSP 1 Score: 114 bits (286), Expect = 5.310e-27
Identity = 66/150 (44.00%), Postives = 92/150 (61.33%), Query Frame = 0
Query:  253 LEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSERSIIIVCTLGGIAVGGCVAVICSLFITRGTFDWNGSYQRVINLAANSDSVGLGSCWEISEASKADVVVENWNDNEETIRYDVHVTQDNAFSNPVPRASIKLIR 402
            L+  ++ L+++ELG+R IMV DL+  L    C ++YVAY P SKVS  SI I+C+LG I+V  CVA I S F+T+ T +WNGS  RVINLAA+SD +GL    + +     DVV+E        I++ VH+   +  S  V   S KLI+
Sbjct:    3 LDEAFNALDVAELGQRSIMVSDLSEILRSPKCSNTYVAYLPLSKVSWVSIAILCSLGSISVFWCVAAIISFFVTKDTINWNGSCDRVINLAASSDPIGLCDHKDFTAVGSTDVVMEERETYGGPIQH-VHIVSASVSSQTVLGTSSKLIQ 151          
The following BLAST results are available for this feature:
BLAST of Gcaud9325.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IL84_9FLOR4.100e-5637.50Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1R8_9FLOR2.140e-4435.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYY8_9FLOR5.310e-2744.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 326..402
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..301
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 302..325
NoneNo IPR availableTMHMMTMhelixcoord: 301..323
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_987_length_15461_cov_4.727716contigNODE_987_length_15461_cov_4.727716:4361..5569 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9325.t1Gcaud9325.t1Gracilaria caudata M_176_S67 malemRNANODE_987_length_15461_cov_4.727716 4361..5569 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9325.t1 ID=Gcaud9325.t1|Name=Gcaud9325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MGFVSAFSNAALVRRRSNATFALLCIQGAVCVIILALKISAPSGIVDSRT
FHVDWNHTVRGEAFCRKKGRNLAVTRIGEALQKLQTHFESRGGILSVGRT
GKNPDALIVEDDEFSLGPTYVVDEFKLSTGLKISVPVSDEPVSFDTSAFT
RQTGFEVKYQKASFNEVDFTDTGDQITVGPLYIMQFFSPRSPNSSQKFEM
YSFARCYVRRLKLSQGTSKVVRGKCMVSNLGRDTTKNGNWQSISTQPAIL
GELEGTYSGLNISELGKRWIMVYDLANALSREPCGDSYVAYRPWSKVSER
SIIIVCTLGGIAVGGCVAVICSLFITRGTFDWNGSYQRVINLAANSDSVG
LGSCWEISEASKADVVVENWNDNEETIRYDVHVTQDNAFSNPVPRASIKL
IR*
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