Gcaud9323.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9323.t1
Unique Name	Gcaud9323.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1448_length_10592_cov_4.938196	contig	NODE_1448_length_10592_cov_4.938196:9283..10461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9323	Gcaud9323	Gracilaria caudata M_176_S67 male	gene	NODE_1448_length_10592_cov_4.938196 9283..10461 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9323.t1.stop1	Gcaud9323.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1448_length_10592_cov_4.938196 9283..9285 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9323.t1.CDS1	Gcaud9323.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1448_length_10592_cov_4.938196 9283..10461 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9323.t1.exon1	Gcaud9323.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1448_length_10592_cov_4.938196 9283..10461 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9323.t1.start1	Gcaud9323.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1448_length_10592_cov_4.938196 10459..10461 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9323.t1	Gcaud9323.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1448_length_10592_cov_4.938196 9283..10461 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461-
coding sequence from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461-

mRNA sequence

>Gcaud9323.t1 ID=Gcaud9323.t1|Name=Gcaud9323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp
MEETLPGTSEFEQRISMFGGRRGSQRISSGQETGEENSFHDNRSVARPNI
ESASSGNQGREHGLILQGTGYETVTKEMKEQYNFLQEAYLERDAGDVPNP
PAESELEGSERMLSMSSTPTAAPSPYETDMQGQLVTDSDSGNVSYQQSPM
LAPSESLSGASGDIRHNHVLRRVRNGDIHDDSVLDDYQHNESSVRESARQ
GQGHGTMELRSDLSNDGPWPWWWSDQKDQKGIFEESPGRLEPEVFDKENS
SLPSNNQSPVEQSSSGLSTEDAKAAVVVDDTAILKPSEIAKLGHLPTVGS
KWQRQYSSTSDGTSRERFENNPYFDELRKRREPYVKTVANRLSTGVKAYS
TESGESILEQARKEFEEQHSQQPSVRFNDNDPSSWVTQGVEV*

spliced messenger RNA

>Gcaud9323.t1 ID=Gcaud9323.t1|Name=Gcaud9323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGACCTTGCCCGGAACTAGCGAGTTTGAACAACGTATCTCCAT
GTTTGGTGGACGTAGGGGTTCCCAAAGAATTTCTTCAGGTCAAGAAACTG
GTGAAGAGAATTCTTTTCATGACAACCGCTCGGTAGCGCGGCCGAATATC
GAATCGGCGTCGAGTGGGAACCAAGGGCGCGAGCATGGTTTGATTTTGCA
AGGTACGGGATATGAAACGGTAACGAAGGAAATGAAGGAGCAGTACAATT
TTCTGCAAGAAGCCTACTTGGAAAGAGATGCCGGTGATGTCCCAAACCCA
CCCGCAGAGAGTGAACTTGAAGGCTCGGAAAGGATGCTCTCAATGAGTTC
CACCCCAACTGCTGCTCCCTCTCCGTACGAGACAGACATGCAAGGACAAT
TGGTCACTGATTCGGATTCTGGCAATGTCTCCTACCAACAGAGTCCGATG
CTTGCACCATCAGAATCTTTGTCCGGGGCCTCGGGAGACATACGCCACAA
TCACGTGCTGCGGAGGGTTAGGAACGGGGATATCCACGACGACTCGGTTC
TGGATGACTATCAACACAATGAGTCTAGTGTTCGTGAAAGTGCACGTCAA
GGTCAAGGTCATGGGACGATGGAGTTGCGGTCGGATTTGTCGAACGATGG
ACCTTGGCCGTGGTGGTGGTCTGATCAGAAGGATCAAAAGGGGATCTTCG
AAGAAAGTCCAGGGCGTCTGGAGCCCGAAGTGTTTGACAAGGAAAATTCA
TCTTTGCCCAGCAATAATCAGTCACCCGTTGAGCAATCCTCGTCGGGACT
TTCGACAGAGGATGCAAAGGCAGCAGTTGTGGTTGATGACACGGCGATTC
TGAAACCGTCTGAGATAGCAAAGCTGGGGCATCTTCCAACAGTAGGCTCG
AAATGGCAGCGACAGTACTCAAGTACTTCTGACGGGACAAGCCGCGAAAG
ATTTGAGAACAATCCTTACTTCGATGAACTTAGAAAACGGCGGGAACCGT
ACGTGAAGACTGTGGCTAATCGTCTGAGCACAGGTGTGAAGGCATACTCA
ACAGAGTCGGGGGAGTCAATACTGGAGCAGGCTCGGAAGGAATTTGAAGA
GCAACATTCGCAGCAACCATCGGTGAGGTTTAATGACAATGATCCATCCT
CGTGGGTCACACAAGGAGTGGAAGTGTAG

protein sequence of Gcaud9323.t1

>Gcaud9323.t1 ID=Gcaud9323.t1|Name=Gcaud9323.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=393bp
MEETLPGTSEFEQRISMFGGRRGSQRISSGQETGEENSFHDNRSVARPNI
ESASSGNQGREHGLILQGTGYETVTKEMKEQYNFLQEAYLERDAGDVPNP
PAESELEGSERMLSMSSTPTAAPSPYETDMQGQLVTDSDSGNVSYQQSPM
LAPSESLSGASGDIRHNHVLRRVRNGDIHDDSVLDDYQHNESSVRESARQ
GQGHGTMELRSDLSNDGPWPWWWSDQKDQKGIFEESPGRLEPEVFDKENS
SLPSNNQSPVEQSSSGLSTEDAKAAVVVDDTAILKPSEIAKLGHLPTVGS
KWQRQYSSTSDGTSRERFENNPYFDELRKRREPYVKTVANRLSTGVKAYS
TESGESILEQARKEFEEQHSQQPSVRFNDNDPSSWVTQGVEV*

mRNA from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9323.t1 ID=Gcaud9323.t1|Name=Gcaud9323.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461- (Gracilaria caudata M_176_S67 male)
ATGGAAGAGACCTTGCCCGGAACTAGCGAGTTTGAACAACGTATCTCCAT
GTTTGGTGGACGTAGGGGTTCCCAAAGAATTTCTTCAGGTCAAGAAACTG
GTGAAGAGAATTCTTTTCATGACAACCGCTCGGTAGCGCGGCCGAATATC
GAATCGGCGTCGAGTGGGAACCAAGGGCGCGAGCATGGTTTGATTTTGCA
AGGTACGGGATATGAAACGGTAACGAAGGAAATGAAGGAGCAGTACAATT
TTCTGCAAGAAGCCTACTTGGAAAGAGATGCCGGTGATGTCCCAAACCCA
CCCGCAGAGAGTGAACTTGAAGGCTCGGAAAGGATGCTCTCAATGAGTTC
CACCCCAACTGCTGCTCCCTCTCCGTACGAGACAGACATGCAAGGACAAT
TGGTCACTGATTCGGATTCTGGCAATGTCTCCTACCAACAGAGTCCGATG
CTTGCACCATCAGAATCTTTGTCCGGGGCCTCGGGAGACATACGCCACAA
TCACGTGCTGCGGAGGGTTAGGAACGGGGATATCCACGACGACTCGGTTC
TGGATGACTATCAACACAATGAGTCTAGTGTTCGTGAAAGTGCACGTCAA
GGTCAAGGTCATGGGACGATGGAGTTGCGGTCGGATTTGTCGAACGATGG
ACCTTGGCCGTGGTGGTGGTCTGATCAGAAGGATCAAAAGGGGATCTTCG
AAGAAAGTCCAGGGCGTCTGGAGCCCGAAGTGTTTGACAAGGAAAATTCA
TCTTTGCCCAGCAATAATCAGTCACCCGTTGAGCAATCCTCGTCGGGACT
TTCGACAGAGGATGCAAAGGCAGCAGTTGTGGTTGATGACACGGCGATTC
TGAAACCGTCTGAGATAGCAAAGCTGGGGCATCTTCCAACAGTAGGCTCG
AAATGGCAGCGACAGTACTCAAGTACTTCTGACGGGACAAGCCGCGAAAG
ATTTGAGAACAATCCTTACTTCGATGAACTTAGAAAACGGCGGGAACCGT
ACGTGAAGACTGTGGCTAATCGTCTGAGCACAGGTGTGAAGGCATACTCA
ACAGAGTCGGGGGAGTCAATACTGGAGCAGGCTCGGAAGGAATTTGAAGA
GCAACATTCGCAGCAACCATCGGTGAGGTTTAATGACAATGATCCATCCT
CGTGGGTCACACAAGGAGTGGAAGTGTAG

Coding sequence (CDS) from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461-

>Gcaud9323.t1 ID=Gcaud9323.t1|Name=Gcaud9323.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1179bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:9283..10461- (Gracilaria caudata M_176_S67 male)
ATGGAAGAGACCTTGCCCGGAACTAGCGAGTTTGAACAACGTATCTCCAT
GTTTGGTGGACGTAGGGGTTCCCAAAGAATTTCTTCAGGTCAAGAAACTG
GTGAAGAGAATTCTTTTCATGACAACCGCTCGGTAGCGCGGCCGAATATC
GAATCGGCGTCGAGTGGGAACCAAGGGCGCGAGCATGGTTTGATTTTGCA
AGGTACGGGATATGAAACGGTAACGAAGGAAATGAAGGAGCAGTACAATT
TTCTGCAAGAAGCCTACTTGGAAAGAGATGCCGGTGATGTCCCAAACCCA
CCCGCAGAGAGTGAACTTGAAGGCTCGGAAAGGATGCTCTCAATGAGTTC
CACCCCAACTGCTGCTCCCTCTCCGTACGAGACAGACATGCAAGGACAAT
TGGTCACTGATTCGGATTCTGGCAATGTCTCCTACCAACAGAGTCCGATG
CTTGCACCATCAGAATCTTTGTCCGGGGCCTCGGGAGACATACGCCACAA
TCACGTGCTGCGGAGGGTTAGGAACGGGGATATCCACGACGACTCGGTTC
TGGATGACTATCAACACAATGAGTCTAGTGTTCGTGAAAGTGCACGTCAA
GGTCAAGGTCATGGGACGATGGAGTTGCGGTCGGATTTGTCGAACGATGG
ACCTTGGCCGTGGTGGTGGTCTGATCAGAAGGATCAAAAGGGGATCTTCG
AAGAAAGTCCAGGGCGTCTGGAGCCCGAAGTGTTTGACAAGGAAAATTCA
TCTTTGCCCAGCAATAATCAGTCACCCGTTGAGCAATCCTCGTCGGGACT
TTCGACAGAGGATGCAAAGGCAGCAGTTGTGGTTGATGACACGGCGATTC
TGAAACCGTCTGAGATAGCAAAGCTGGGGCATCTTCCAACAGTAGGCTCG
AAATGGCAGCGACAGTACTCAAGTACTTCTGACGGGACAAGCCGCGAAAG
ATTTGAGAACAATCCTTACTTCGATGAACTTAGAAAACGGCGGGAACCGT
ACGTGAAGACTGTGGCTAATCGTCTGAGCACAGGTGTGAAGGCATACTCA
ACAGAGTCGGGGGAGTCAATACTGGAGCAGGCTCGGAAGGAATTTGAAGA
GCAACATTCGCAGCAACCATCGGTGAGGTTTAATGACAATGATCCATCCT
CGTGGGTCACACAAGGAGTGGAAGTGTAG