Gcaud9305.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9305.t1
Unique Name	Gcaud9305.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1188_length_12866_cov_4.640157	contig	NODE_1188_length_12866_cov_4.640157:10867..12450 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	111780.Sta7437_0958
Preferred name	cpeE
PFAMs	CpcD,PBS_linker_poly
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02286,ko:K05380
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	8.35e-39
EggNOG OGs	COG0237@1\|root,COG0237@2\|Bacteria,1G3TQ@1117\|Cyanobacteria,3VNNF@52604\|Pleurocapsales
Description	CpcD/allophycocyanin linker domain
COG category	H
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9305	Gcaud9305	Gracilaria caudata M_176_S67 male	gene	NODE_1188_length_12866_cov_4.640157 10867..12450 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9305.t1.stop1	Gcaud9305.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1188_length_12866_cov_4.640157 10867..10869 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9305.t1.CDS1	Gcaud9305.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1188_length_12866_cov_4.640157 10867..12450 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9305.t1.exon1	Gcaud9305.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1188_length_12866_cov_4.640157 10867..12450 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9305.t1.start1	Gcaud9305.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1188_length_12866_cov_4.640157 12448..12450 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9305.t1	Gcaud9305.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1188_length_12866_cov_4.640157 10867..12450 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450-
coding sequence from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450-

mRNA sequence

>Gcaud9305.t1 ID=Gcaud9305.t1|Name=Gcaud9305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp
MAFVSALPVVPSAPCSSFAPARARVARAAGGVGVARRARTSMAVEFQEYS
GGLDRLTQAPYSITRYLFKDRPVPLTDEDKEAVINAALRQLFGNAYLMEE
ERAQFYTAESNFRCGRITAREFARAVAKSETYRQRFFERVTQFRFIELNF
KHFLGRAPLNQVEYSKHFKIFAAGGYEAEIDSYFDDPEYDEVFGDDIFPF
TRFRGTYAPINQFNRMCTIVGGFAGSDKFKPQALVTSLAANVPTPAYSVV
DGLPPIPNSEHPSKKYELPAVSLERFINELDIAQARAYQLQIELDRAYAE
LDGSRDIIDPFKAMVSDMNITPLYGKNYGNGAVKVFPGQYEGAPVASWGP
SGVDRINGPTRRPAAEVSKKEKELERVKQLIVDIERRIAVLSADREKPAL
TPPPMTFEIEGLEFPVVEEEPAEAGPVIIEPAFVAATPGATEGEEEIAVD
PNLLPTTMDTEKDDSGVTTPQPIVVSTKREFADVGKLPKELMEEMEAEKK
ASGKDFLAGKGGKPSFPGDGSEMVVGG*

spliced messenger RNA

>Gcaud9305.t1 ID=Gcaud9305.t1|Name=Gcaud9305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTCTCGGCGCTTCCCGTCGTGCCCTCCGCGCCCTGCTCCTC
GTTCGCGCCGGCGCGCGCGCGCGTCGCGCGCGCTGCGGGTGGTGTGGGCG
TGGCGCGACGCGCGCGCACCTCGATGGCCGTCGAGTTCCAGGAGTACTCG
GGAGGGCTTGACCGTCTTACACAGGCGCCGTATTCCATCACGCGCTACTT
GTTCAAGGACCGTCCCGTGCCGCTGACGGACGAGGATAAGGAGGCCGTTA
TCAATGCTGCGCTGCGACAGCTGTTTGGGAACGCATATCTCATGGAAGAG
GAGCGTGCGCAGTTCTACACGGCGGAGTCCAACTTTCGATGCGGCCGCAT
CACGGCGAGGGAGTTTGCGCGCGCTGTAGCCAAGTCGGAGACATATCGCC
AGCGCTTCTTTGAAAGAGTCACTCAGTTCCGTTTCATTGAACTTAACTTC
AAGCACTTTTTGGGTCGCGCTCCGCTCAACCAGGTTGAATACTCGAAGCA
CTTCAAGATTTTTGCTGCTGGAGGCTATGAGGCGGAGATTGATTCTTACT
TTGACGACCCTGAATACGACGAGGTGTTTGGCGATGACATTTTCCCGTTC
ACTCGCTTCCGCGGTACTTATGCGCCTATCAATCAGTTCAATCGTATGTG
TACCATTGTAGGTGGCTTTGCGGGCTCGGATAAGTTCAAGCCGCAGGCGT
TGGTCACGTCGCTTGCTGCAAACGTTCCCACCCCGGCGTACTCTGTTGTG
GATGGACTGCCACCTATTCCGAATAGCGAGCATCCTTCGAAGAAGTATGA
GCTTCCTGCCGTTTCGCTGGAGCGATTCATCAACGAGCTTGACATTGCGC
AGGCGAGAGCCTATCAACTGCAGATCGAGCTTGACCGCGCCTACGCCGAG
TTGGATGGCTCGAGGGATATTATTGACCCCTTCAAGGCAATGGTGAGCGA
CATGAATATTACTCCGCTTTACGGCAAGAACTACGGCAACGGAGCTGTCA
AGGTGTTCCCGGGTCAGTACGAGGGAGCGCCAGTTGCTTCATGGGGTCCG
TCTGGTGTTGATCGCATCAACGGGCCTACGAGACGACCAGCGGCCGAAGT
TTCAAAGAAGGAGAAGGAATTGGAACGCGTCAAGCAACTCATCGTTGACA
TTGAACGCCGAATTGCCGTGCTTTCGGCCGACAGGGAGAAGCCGGCGCTC
ACTCCGCCGCCAATGACGTTCGAGATTGAGGGCTTGGAATTCCCGGTCGT
GGAAGAAGAGCCGGCCGAAGCTGGTCCTGTCATCATTGAGCCGGCGTTCG
TGGCTGCCACTCCGGGTGCTACTGAGGGCGAGGAGGAGATTGCAGTGGAC
CCCAACTTGTTGCCGACTACAATGGACACTGAGAAGGATGATAGTGGTGT
CACTACTCCTCAGCCTATCGTTGTGTCAACCAAGAGAGAATTTGCTGATG
TTGGCAAGCTACCAAAGGAACTTATGGAAGAAATGGAGGCGGAGAAGAAG
GCGTCCGGAAAGGACTTTCTTGCGGGCAAGGGTGGTAAGCCATCGTTCCC
GGGTGATGGTTCTGAAATGGTCGTTGGCGGTTAA

protein sequence of Gcaud9305.t1

>Gcaud9305.t1 ID=Gcaud9305.t1|Name=Gcaud9305.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=528bp
MAFVSALPVVPSAPCSSFAPARARVARAAGGVGVARRARTSMAVEFQEYS
GGLDRLTQAPYSITRYLFKDRPVPLTDEDKEAVINAALRQLFGNAYLMEE
ERAQFYTAESNFRCGRITAREFARAVAKSETYRQRFFERVTQFRFIELNF
KHFLGRAPLNQVEYSKHFKIFAAGGYEAEIDSYFDDPEYDEVFGDDIFPF
TRFRGTYAPINQFNRMCTIVGGFAGSDKFKPQALVTSLAANVPTPAYSVV
DGLPPIPNSEHPSKKYELPAVSLERFINELDIAQARAYQLQIELDRAYAE
LDGSRDIIDPFKAMVSDMNITPLYGKNYGNGAVKVFPGQYEGAPVASWGP
SGVDRINGPTRRPAAEVSKKEKELERVKQLIVDIERRIAVLSADREKPAL
TPPPMTFEIEGLEFPVVEEEPAEAGPVIIEPAFVAATPGATEGEEEIAVD
PNLLPTTMDTEKDDSGVTTPQPIVVSTKREFADVGKLPKELMEEMEAEKK
ASGKDFLAGKGGKPSFPGDGSEMVVGG*

mRNA from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9305.t1 ID=Gcaud9305.t1|Name=Gcaud9305.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450- (Gracilaria caudata M_176_S67 male)
ATGGCGTTTGTCTCGGCGCTTCCCGTCGTGCCCTCCGCGCCCTGCTCCTC
GTTCGCGCCGGCGCGCGCGCGCGTCGCGCGCGCTGCGGGTGGTGTGGGCG
TGGCGCGACGCGCGCGCACCTCGATGGCCGTCGAGTTCCAGGAGTACTCG
GGAGGGCTTGACCGTCTTACACAGGCGCCGTATTCCATCACGCGCTACTT
GTTCAAGGACCGTCCCGTGCCGCTGACGGACGAGGATAAGGAGGCCGTTA
TCAATGCTGCGCTGCGACAGCTGTTTGGGAACGCATATCTCATGGAAGAG
GAGCGTGCGCAGTTCTACACGGCGGAGTCCAACTTTCGATGCGGCCGCAT
CACGGCGAGGGAGTTTGCGCGCGCTGTAGCCAAGTCGGAGACATATCGCC
AGCGCTTCTTTGAAAGAGTCACTCAGTTCCGTTTCATTGAACTTAACTTC
AAGCACTTTTTGGGTCGCGCTCCGCTCAACCAGGTTGAATACTCGAAGCA
CTTCAAGATTTTTGCTGCTGGAGGCTATGAGGCGGAGATTGATTCTTACT
TTGACGACCCTGAATACGACGAGGTGTTTGGCGATGACATTTTCCCGTTC
ACTCGCTTCCGCGGTACTTATGCGCCTATCAATCAGTTCAATCGTATGTG
TACCATTGTAGGTGGCTTTGCGGGCTCGGATAAGTTCAAGCCGCAGGCGT
TGGTCACGTCGCTTGCTGCAAACGTTCCCACCCCGGCGTACTCTGTTGTG
GATGGACTGCCACCTATTCCGAATAGCGAGCATCCTTCGAAGAAGTATGA
GCTTCCTGCCGTTTCGCTGGAGCGATTCATCAACGAGCTTGACATTGCGC
AGGCGAGAGCCTATCAACTGCAGATCGAGCTTGACCGCGCCTACGCCGAG
TTGGATGGCTCGAGGGATATTATTGACCCCTTCAAGGCAATGGTGAGCGA
CATGAATATTACTCCGCTTTACGGCAAGAACTACGGCAACGGAGCTGTCA
AGGTGTTCCCGGGTCAGTACGAGGGAGCGCCAGTTGCTTCATGGGGTCCG
TCTGGTGTTGATCGCATCAACGGGCCTACGAGACGACCAGCGGCCGAAGT
TTCAAAGAAGGAGAAGGAATTGGAACGCGTCAAGCAACTCATCGTTGACA
TTGAACGCCGAATTGCCGTGCTTTCGGCCGACAGGGAGAAGCCGGCGCTC
ACTCCGCCGCCAATGACGTTCGAGATTGAGGGCTTGGAATTCCCGGTCGT
GGAAGAAGAGCCGGCCGAAGCTGGTCCTGTCATCATTGAGCCGGCGTTCG
TGGCTGCCACTCCGGGTGCTACTGAGGGCGAGGAGGAGATTGCAGTGGAC
CCCAACTTGTTGCCGACTACAATGGACACTGAGAAGGATGATAGTGGTGT
CACTACTCCTCAGCCTATCGTTGTGTCAACCAAGAGAGAATTTGCTGATG
TTGGCAAGCTACCAAAGGAACTTATGGAAGAAATGGAGGCGGAGAAGAAG
GCGTCCGGAAAGGACTTTCTTGCGGGCAAGGGTGGTAAGCCATCGTTCCC
GGGTGATGGTTCTGAAATGGTCGTTGGCGGTTAA

Coding sequence (CDS) from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450-

>Gcaud9305.t1 ID=Gcaud9305.t1|Name=Gcaud9305.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1584bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:10867..12450- (Gracilaria caudata M_176_S67 male)
ATGGCGTTTGTCTCGGCGCTTCCCGTCGTGCCCTCCGCGCCCTGCTCCTC
GTTCGCGCCGGCGCGCGCGCGCGTCGCGCGCGCTGCGGGTGGTGTGGGCG
TGGCGCGACGCGCGCGCACCTCGATGGCCGTCGAGTTCCAGGAGTACTCG
GGAGGGCTTGACCGTCTTACACAGGCGCCGTATTCCATCACGCGCTACTT
GTTCAAGGACCGTCCCGTGCCGCTGACGGACGAGGATAAGGAGGCCGTTA
TCAATGCTGCGCTGCGACAGCTGTTTGGGAACGCATATCTCATGGAAGAG
GAGCGTGCGCAGTTCTACACGGCGGAGTCCAACTTTCGATGCGGCCGCAT
CACGGCGAGGGAGTTTGCGCGCGCTGTAGCCAAGTCGGAGACATATCGCC
AGCGCTTCTTTGAAAGAGTCACTCAGTTCCGTTTCATTGAACTTAACTTC
AAGCACTTTTTGGGTCGCGCTCCGCTCAACCAGGTTGAATACTCGAAGCA
CTTCAAGATTTTTGCTGCTGGAGGCTATGAGGCGGAGATTGATTCTTACT
TTGACGACCCTGAATACGACGAGGTGTTTGGCGATGACATTTTCCCGTTC
ACTCGCTTCCGCGGTACTTATGCGCCTATCAATCAGTTCAATCGTATGTG
TACCATTGTAGGTGGCTTTGCGGGCTCGGATAAGTTCAAGCCGCAGGCGT
TGGTCACGTCGCTTGCTGCAAACGTTCCCACCCCGGCGTACTCTGTTGTG
GATGGACTGCCACCTATTCCGAATAGCGAGCATCCTTCGAAGAAGTATGA
GCTTCCTGCCGTTTCGCTGGAGCGATTCATCAACGAGCTTGACATTGCGC
AGGCGAGAGCCTATCAACTGCAGATCGAGCTTGACCGCGCCTACGCCGAG
TTGGATGGCTCGAGGGATATTATTGACCCCTTCAAGGCAATGGTGAGCGA
CATGAATATTACTCCGCTTTACGGCAAGAACTACGGCAACGGAGCTGTCA
AGGTGTTCCCGGGTCAGTACGAGGGAGCGCCAGTTGCTTCATGGGGTCCG
TCTGGTGTTGATCGCATCAACGGGCCTACGAGACGACCAGCGGCCGAAGT
TTCAAAGAAGGAGAAGGAATTGGAACGCGTCAAGCAACTCATCGTTGACA
TTGAACGCCGAATTGCCGTGCTTTCGGCCGACAGGGAGAAGCCGGCGCTC
ACTCCGCCGCCAATGACGTTCGAGATTGAGGGCTTGGAATTCCCGGTCGT
GGAAGAAGAGCCGGCCGAAGCTGGTCCTGTCATCATTGAGCCGGCGTTCG
TGGCTGCCACTCCGGGTGCTACTGAGGGCGAGGAGGAGATTGCAGTGGAC
CCCAACTTGTTGCCGACTACAATGGACACTGAGAAGGATGATAGTGGTGT
CACTACTCCTCAGCCTATCGTTGTGTCAACCAAGAGAGAATTTGCTGATG
TTGGCAAGCTACCAAAGGAACTTATGGAAGAAATGGAGGCGGAGAAGAAG
GCGTCCGGAAAGGACTTTCTTGCGGGCAAGGGTGGTAAGCCATCGTTCCC
GGGTGATGGTTCTGAAATGGTCGTTGGCGGTTAA