Gcaud8572.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8572.t1
Unique NameGcaud8572.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_15_length_84509_cov_4.337096contigNODE_15_length_84509_cov_4.337096:45371..45811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008880390.1
PFAMsRibosomal_S16
Max annot lvl2759|Eukaryota
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.16e-33
EggNOG OGsCOG0228@1|root,KOG3419@2759|Eukaryota
Descriptionribosomal protein s16
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8572Gcaud8572Gracilaria caudata M_176_S67 malegeneNODE_15_length_84509_cov_4.337096 45371..45811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1Gcaud8572.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_15_length_84509_cov_4.337096 45371..45811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1.start1Gcaud8572.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_15_length_84509_cov_4.337096 45371..45373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1.CDS1Gcaud8572.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 45371..45602 +
Gcaud8572.t1.CDS2Gcaud8572.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_15_length_84509_cov_4.337096 45666..45811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1.exon1Gcaud8572.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 45371..45602 +
Gcaud8572.t1.exon2Gcaud8572.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_15_length_84509_cov_4.337096 45666..45811 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1.intron1Gcaud8572.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_15_length_84509_cov_4.337096 45603..45665 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8572.t1.stop1Gcaud8572.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_15_length_84509_cov_4.337096 45809..45811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8572.t1 ID=Gcaud8572.t1|Name=Gcaud8572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
MVVRIRLARWGQIHRPFYRIVAADARAKRDGRFIEVLGTYNPLPHSRHEA
ARNIKRVCLNVERIKHWVSVGAQPSDTVARLLGTAGVLPFSPRVTAGKMK
LQKKTNVQRAFSTRAGLNGLRDLVK*
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spliced messenger RNA

>Gcaud8572.t1 ID=Gcaud8572.t1|Name=Gcaud8572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=378bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:45371..45811+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCCGTATACGCTTGGCAAGATGGGGTCAAATTCATCGCCCGTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCAAAGCGGGATGGGAGGTTCA
TAGAAGTGTTAGGCACGTACAATCCATTGCCGCATTCCCGGCACGAGGCG
GCTCGTAACATCAAACGCGTGTGTCTTAATGTCGAAAGAATTAAGCACTG
GGTCTCCGTTGGGGCACAGCCTTCAGATACAGTTGCCAGATTATTGGGTA
CTGCCGGTGTCTTGCCATTTTCCCCGAGGGTAACTGCTGGTAAGATGAAA
CTACAAAAGAAGACCAATGTCCAAAGAGCGTTTTCAACCAGAGCGGGCTT
AAATGGTTTGCGAGATCTGGTCAAATGA
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protein sequence of Gcaud8572.t1

>Gcaud8572.t1 ID=Gcaud8572.t1|Name=Gcaud8572.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
MVVRIRLARWGQIHRPFYRIVAADARAKRDGRFIEVLGTYNPLPHSRHEA
ARNIKRVCLNVERIKHWVSVGAQPSDTVARLLGTAGVLPFSPRVTAGKMK
LQKKTNVQRAFSTRAGLNGLRDLVK*
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mRNA from alignment at NODE_15_length_84509_cov_4.337096:45371..45811+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8572.t1 ID=Gcaud8572.t1|Name=Gcaud8572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:45371..45811+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTCCGTATACGCTTGGCAAGATGGGGTCAAATTCATCGCCCGTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCAAAGCGGGATGGGAGGTTCA
TAGAAGTGTTAGGCACGTACAATCCATTGCCGCATTCCCGGCACGAGGCG
GCTCGTAACATCAAACGCGTGTGTCTTAATGTCGAAAGAATTAAGCACTG
GGTCTCCGTTGGGGCACAGCCTTCAGATACAGGTAAGCGATACATGCAAC
CACTTCTTTCAAGTGAAAAACATCTCTAACTTGTGACTCCACCAGTTGCC
AGATTATTGGGTACTGCCGGTGTCTTGCCATTTTCCCCGAGGGTAACTGC
TGGTAAGATGAAACTACAAAAGAAGACCAATGTCCAAAGAGCGTTTTCAA
CCAGAGCGGGCTTAAATGGTTTGCGAGATCTGGTCAAATGA
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Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:45371..45811+

>Gcaud8572.t1 ID=Gcaud8572.t1|Name=Gcaud8572.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=378bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:45371..45811+ (Gracilaria caudata M_176_S67 male)
ATGGTTGTCCGTATACGCTTGGCAAGATGGGGTCAAATTCATCGCCCGTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCAAAGCGGGATGGGAGGTTCA
TAGAAGTGTTAGGCACGTACAATCCATTGCCGCATTCCCGGCACGAGGCG
GCTCGTAACATCAAACGCGTGTGTCTTAATGTCGAAAGAATTAAGCACTG
GGTCTCCGTTGGGGCACAGCCTTCAGATACAGTTGCCAGATTATTGGGTA
CTGCCGGTGTCTTGCCATTTTCCCCGAGGGTAACTGCTGGTAAGATGAAA
CTACAAAAGAAGACCAATGTCCAAAGAGCGTTTTCAACCAGAGCGGGCTT
AAATGGTTTGCGAGATCTGGTCAAATGA
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