Gcaud8406.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8406.t1
Unique NameGcaud8406.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length101
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1098_length_13905_cov_4.567830contigNODE_1098_length_13905_cov_4.567830:5530..5939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog883103.HMPREF9703_00305
Preferred nameinfA
PFAMseIF-1a
Max annot lvl91061|Bacilli
KEGG koko:K02518
GOsGO:0001871,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009986,GO:0030246,GO:0030247,GO:0043021,GO:0043022,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:2001065
Evalue4.68e-28
EggNOG OGsCOG0361@1|root,COG0361@2|Bacteria,1V9ZK@1239|Firmicutes,4HKF4@91061|Bacilli,27GMT@186828|Carnobacteriaceae
DescriptionOne of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8406Gcaud8406Gracilaria caudata M_176_S67 malegeneNODE_1098_length_13905_cov_4.567830 5530..5939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1Gcaud8406.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1098_length_13905_cov_4.567830 5530..5939 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1.start1Gcaud8406.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1098_length_13905_cov_4.567830 5530..5532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1.CDS1Gcaud8406.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1098_length_13905_cov_4.567830 5530..5818 +
Gcaud8406.t1.CDS2Gcaud8406.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1098_length_13905_cov_4.567830 5926..5939 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1.exon1Gcaud8406.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1098_length_13905_cov_4.567830 5530..5818 +
Gcaud8406.t1.exon2Gcaud8406.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1098_length_13905_cov_4.567830 5926..5939 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1.intron1Gcaud8406.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1098_length_13905_cov_4.567830 5819..5925 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1.stop1Gcaud8406.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1098_length_13905_cov_4.567830 5937..5939 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=101bp
MKVDRSGGGKRAKNARENRTVQSSSSSSPELATKIEIDGTVMESLPSATF
KVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
*
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spliced messenger RNA

>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:5530..5939+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTCGATCGCTCAGGCGGTGGCAAACGCGCGAAGAACGCCAGAGA
GAATAGAACCGTTCAATCCTCCTCTTCGTCTTCGCCGGAGCTGGCCACCA
AAATTGAAATTGATGGTACTGTCATGGAGAGTTTACCCAGCGCAACGTTT
AAGGTCGAATTGGACAATGAAGCCGAGATTCTTGCACACATCTCGGGCAA
GATTCGAAAGAACTACATTCGTATTCTTGTGGGTGACCGCGTCAAGTGCG
AACTTTCTCCTTATGATCTCACAAAGGGACGGATAACATTTCGGTACAAG
TAA
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protein sequence of Gcaud8406.t1

>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=101bp
MKVDRSGGGKRAKNARENRTVQSSSSSSPELATKIEIDGTVMESLPSATF
KVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
*
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mRNA from alignment at NODE_1098_length_13905_cov_4.567830:5530..5939+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=410bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:5530..5939+ (Gracilaria caudata M_176_S67 male)
ATGAAGGTCGATCGCTCAGGCGGTGGCAAACGCGCGAAGAACGCCAGAGA
GAATAGAACCGTTCAATCCTCCTCTTCGTCTTCGCCGGAGCTGGCCACCA
AAATTGAAATTGATGGTACTGTCATGGAGAGTTTACCCAGCGCAACGTTT
AAGGTCGAATTGGACAATGAAGCCGAGATTCTTGCACACATCTCGGGCAA
GATTCGAAAGAACTACATTCGTATTCTTGTGGGTGACCGCGTCAAGTGCG
AACTTTCTCCTTATGATCTCACAAAGGGACGGATAACATGTACGTTGTTG
TTCTCGTTGTTTTCTGTTGTGCTTGCGTGCGATGCCAGAACACTTGTTTA
TTGTTTGGTTCTGACTGCTTTGTTCTTTGACATGTTTCGTATGCAGTTCG
GTACAAGTAA
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Coding sequence (CDS) from alignment at NODE_1098_length_13905_cov_4.567830:5530..5939+

>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=303bp|location=Sequence derived from alignment at NODE_1098_length_13905_cov_4.567830:5530..5939+ (Gracilaria caudata M_176_S67 male)
ATGAAGGTCGATCGCTCAGGCGGTGGCAAACGCGCGAAGAACGCCAGAGA
GAATAGAACCGTTCAATCCTCCTCTTCGTCTTCGCCGGAGCTGGCCACCA
AAATTGAAATTGATGGTACTGTCATGGAGAGTTTACCCAGCGCAACGTTT
AAGGTCGAATTGGACAATGAAGCCGAGATTCTTGCACACATCTCGGGCAA
GATTCGAAAGAACTACATTCGTATTCTTGTGGGTGACCGCGTCAAGTGCG
AACTTTCTCCTTATGATCTCACAAAGGGACGGATAACATTTCGGTACAAG
TAA
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