Gcaud8406.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8406.t1
Unique NameGcaud8406.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length101
Homology
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A2V3IZ11_9FLOR (Translation initiation factor IF-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ11_9FLOR)

HSP 1 Score: 164 bits (415), Expect = 2.140e-50
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0
Query:    1 MKVDRSGGGKRAKNARENRTVQSSSSSSPELATKIEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            MKVDR GGGKRAKNAR+N+TVQ+    S   ATKIEIDG VMESLPSA FKVELDN+AEILAHISG+IRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
Sbjct:   36 MKVDRRGGGKRAKNARQNKTVQAEERESNAPATKIEIDGIVMESLPSAMFKVELDNKAEILAHISGRIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 135          
BLAST of Gcaud8406.t1 vs. uniprot
Match: R7QEY7_CHOCR (Translation initiation factor IF1, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEY7_CHOCR)

HSP 1 Score: 115 bits (289), Expect = 4.800e-32
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0
Query:   31 LATKIEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            +AT IEIDG V ESLPSA F V+L+N+A +  HISGKIRKNYI+ILVGD+V+CELSPYDLTKGRITFRYK
Sbjct:    1 MATTIEIDGIVTESLPSAVFTVQLENDAVVRGHISGKIRKNYIKILVGDKVRCELSPYDLTKGRITFRYK 70          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A0X8FAW5_9LACT (Translation initiation factor IF-1 n=3 Tax=Aerococcus TaxID=1375 RepID=A0A0X8FAW5_9LACT)

HSP 1 Score: 107 bits (268), Expect = 8.040e-29
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            IE++GTV E+LP+A FKVEL+N  EILAH+SGKIR NYIRIL GDRVK E+SPYDLTKGRIT+R+K
Sbjct:    7 IEVEGTVTETLPNAMFKVELENGVEILAHVSGKIRVNYIRILPGDRVKVEMSPYDLTKGRITYRFK 72          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A849H2H6_9BACT (Translation initiation factor IF-1 n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A849H2H6_9BACT)

HSP 1 Score: 107 bits (267), Expect = 1.110e-28
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            IE++GTV E LP+ATFKVEL+N  EILA++SGK+RK YIR+L GDRVKCE+SPYDLT+GRIT+RYK
Sbjct:    6 IEVEGTVSEVLPNATFKVELENGHEILAYLSGKMRKFYIRVLEGDRVKCEMSPYDLTRGRITYRYK 71          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A2M7A7V6_9BACT (Translation initiation factor IF-1 n=1 Tax=Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9 TaxID=1973916 RepID=A0A2M7A7V6_9BACT)

HSP 1 Score: 107 bits (266), Expect = 1.620e-28
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 0
Query:   34 KIEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            KIE++GT+MESLP+A FKVEL N   +LAH+SGKIR N+IRIL GDRV+ ELSPYDLT+GRIT+RYK
Sbjct:    6 KIEVEGTIMESLPNAMFKVELKNGHRVLAHVSGKIRMNFIRILPGDRVQLELSPYDLTRGRITYRYK 72          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A7V8A4G9_9BACT (Translation initiation factor IF-1 n=1 Tax=Fusobacteria bacterium TaxID=2060921 RepID=A0A7V8A4G9_9BACT)

HSP 1 Score: 107 bits (266), Expect = 1.620e-28
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            IE++G +++SLP+A FKVELDN  ++LAHISGKIR N+IRIL GDRVK ELSPYDLTKGRIT+RYK
Sbjct:    7 IEVEGVILDSLPNAMFKVELDNGHQVLAHISGKIRVNFIRILPGDRVKLELSPYDLTKGRITYRYK 72          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A352VIV9_9BACT (Translation initiation factor IF-1 n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VIV9_9BACT)

HSP 1 Score: 106 bits (264), Expect = 3.180e-28
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            IEI+GTV E LP+ATF+VE +N  E+LA++SGK+RK+YIR+L GDRVKCELSPYDLT+GR+T+RYK
Sbjct:    6 IEIEGTVSEVLPNATFRVEPENGHEVLAYLSGKMRKHYIRVLAGDRVKCELSPYDLTRGRVTYRYK 71          
BLAST of Gcaud8406.t1 vs. uniprot
Match: A0A060DDF7_9BRYO (Translation initiation factor IF-1, chloroplastic n=47 Tax=Embryophyta TaxID=3193 RepID=A0A060DDF7_9BRYO)

HSP 1 Score: 106 bits (264), Expect = 3.860e-28
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            I+++GTV ESLP+A F+V LDNE E+L HISGKIR+NYIRIL GDRVK ELSPYDLTKGRIT+R +
Sbjct:    7 IDMEGTVTESLPNAMFRVRLDNECEVLTHISGKIRRNYIRILPGDRVKVELSPYDLTKGRITYRLR 72          
BLAST of Gcaud8406.t1 vs. uniprot
Match: R7LVS2_9FUSO (Translation initiation factor IF-1 n=29 Tax=Bacteria TaxID=2 RepID=R7LVS2_9FUSO)

HSP 1 Score: 105 bits (263), Expect = 4.520e-28
Identity = 48/66 (72.73%), Postives = 61/66 (92.42%), Query Frame = 0
Query:   35 IEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            IE++GT++ES+P+A FKV+L+N+ EILAHISGKIRKN+IRIL GDRVK E++PYDL+KGRITFR K
Sbjct:    6 IELEGTIIESMPNAMFKVKLENDHEILAHISGKIRKNFIRILPGDRVKVEMTPYDLSKGRITFRLK 71          
BLAST of Gcaud8406.t1 vs. uniprot
Match: IF1_LIMRD (Translation initiation factor IF-1 n=57 Tax=Lactobacillales TaxID=186826 RepID=IF1_LIMRD)

HSP 1 Score: 105 bits (263), Expect = 4.650e-28
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 0
Query:   32 ATKIEIDGTVMESLPSATFKVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK 100
            A  IE++G V E+LP+A FKVEL+N AEILAH+SGKIR +YI+IL GDRVK E+SPYDLTKGRITFR+K
Sbjct:    4 ADVIEVEGKVTETLPNAMFKVELENGAEILAHVSGKIRMHYIKILPGDRVKVEMSPYDLTKGRITFRFK 72          
The following BLAST results are available for this feature:
BLAST of Gcaud8406.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ11_9FLOR2.140e-5085.00Translation initiation factor IF-1, chloroplastic ... [more]
R7QEY7_CHOCR4.800e-3277.14Translation initiation factor IF1, Rhodoplastic n=... [more]
A0A0X8FAW5_9LACT8.040e-2975.76Translation initiation factor IF-1 n=3 Tax=Aerococ... [more]
A0A849H2H6_9BACT1.110e-2874.24Translation initiation factor IF-1 n=1 Tax=Gemmati... [more]
A0A2M7A7V6_9BACT1.620e-2873.13Translation initiation factor IF-1 n=1 Tax=Armatim... [more]
A0A7V8A4G9_9BACT1.620e-2874.24Translation initiation factor IF-1 n=1 Tax=Fusobac... [more]
A0A352VIV9_9BACT3.180e-2871.21Translation initiation factor IF-1 n=1 Tax=Gemmati... [more]
A0A060DDF7_9BRYO3.860e-2874.24Translation initiation factor IF-1, chloroplastic ... [more]
R7LVS2_9FUSO4.520e-2872.73Translation initiation factor IF-1 n=29 Tax=Bacter... [more]
IF1_LIMRD4.650e-2872.46Translation initiation factor IF-1 n=57 Tax=Lactob... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 32..100
e-value: 2.2E-6
score: 37.2
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 33..99
e-value: 7.8E-34
score: 113.5
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 17..100
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 31..100
score: 24.271011
IPR004368Translation initiation factor IF-1CDDcd04451S1_IF1coord: 35..98
e-value: 1.63316E-35
score: 113.77
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 35..98
e-value: 4.0E-24
score: 84.2
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 27..100
score: 20.335573
NoneNo IPR availableGENE3D2.40.50.140coord: 29..100
e-value: 5.7E-34
score: 117.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 17..100
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 10..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1098_length_13905_cov_4.567830contigNODE_1098_length_13905_cov_4.567830:5530..5939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8406.t1Gcaud8406.t1Gracilaria caudata M_176_S67 malemRNANODE_1098_length_13905_cov_4.567830 5530..5939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8406.t1 ID=Gcaud8406.t1|Name=Gcaud8406.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=101bp
MKVDRSGGGKRAKNARENRTVQSSSSSSPELATKIEIDGTVMESLPSATF
KVELDNEAEILAHISGKIRKNYIRILVGDRVKCELSPYDLTKGRITFRYK
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR004368TIF_IF1
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold