|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 88036.EFJ08988 |
| PFAMs | DEAD_2,HBB,Helicase_C_2 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10844 |
| KEGG Pathway | ko03022,ko03420,map03022,map03420 |
| KEGG Module | M00290 |
| GOs | GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360 |
| Evalue | 6e-256 |
| EggNOG OGs | COG1199@1|root,KOG1131@2759|Eukaryota,37KDD@33090|Viridiplantae,3GGTH@35493|Streptophyta |
| EC | 3.6.4.12 |
| Description | DNA repair helicase |
| COG category | L |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03021,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8397.t1.stop1 | Gcaud8397.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1597_length_9575_cov_4.430620 6019..6021 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8397.t1.start1 | Gcaud8397.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1597_length_9575_cov_4.430620 8481..8483 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8397.t1 ID=Gcaud8397.t1|Name=Gcaud8397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=766bp MVLVDIDGLQVVFPYPSLYPEQYSYMRELKRALECGGHALLEMPSGTGKT ITLLSLITAFLSTRSADKSVRKFVYCTRTVEEMQKVMNEMKVLVASRERE LGVPNDLVTVGLASRRHLCVHESVSRMEGSAVDSGCRALTSSWVRERIEV NAERTAPFCKYFESYDREGLDHILAPGVYNLVDLRVYGTRRQWCPYFLAR HSIMMANILVYSYHYLLDPKVAGVVSSELPPESVIVFDEAHNIDNVCIEA LSVDLEQPTIRGALRNITQLNSAIYRAKESAVERLRGEYRRLSSGLPLAE LNAHAAQPDDGRVFAGGEEILAAPVLPGDILREAVPDSIRKAEEFVEFLD KLTRFLEKRADKEIVTQEQPIPFLRQIASACAVEDKKVFRATYDRLISLL MTVHVSSWSEFKPLLTVGDFITMLSTYEKEGMAVLTEPYNDFTGDYEPVL RLACLDASLAVRWVMNHFRTVVITSGTLSPLDTYPRMLNFSVTVSASFNM SMERRCVCPLIMTRGSDQLALSSKYNARQTSDTSRNYGHALIALAGSVPD GIVVFFVSYVFMQQVVKVWTEEGNFLDEIRRLKLLFVETQDPVEASLAIQ NYKAACDSGRGAILLSVARGRAAEGIDFDGQYGRAVILFGVPFQYTESRV LKARLRFLAENYQIQEDDFLVFDAMRQAAQCAGRVIRNKNDYGIVIFADK RFTRAKLRSKLPKWISQFLSADFLDLDLGTAIAEARTFLIQMAQPSAAKS REEEKRPEHYEFLGS* back to topspliced messenger RNA >Gcaud8397.t1 ID=Gcaud8397.t1|Name=Gcaud8397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2298bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:6019..8483- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGTTGGTGGACATCGACGGCCTGCAAGTGGTGTTCCCGTACCCGTC TTTGTATCCCGAGCAGTATAGTTACATGAGGGAGCTCAAGCGGGCTCTTG AATGCGGCGGCCATGCGCTTCTTGAGATGCCCAGTGGGACCGGGAAAACG ATCACGCTGCTTTCTTTGATAACGGCTTTCCTATCCACGAGAAGTGCAGA CAAGAGCGTTCGAAAATTTGTATACTGCACACGGACTGTTGAGGAGATGC AGAAAGTAATGAATGAAATGAAGGTTCTTGTCGCGAGTAGAGAGAGAGAA CTTGGAGTTCCAAATGACCTCGTCACGGTTGGATTGGCCTCTAGAAGACA TTTGTGCGTCCACGAATCAGTTAGTCGCATGGAAGGTTCTGCAGTTGATA GCGGTTGTCGCGCCTTGACATCGTCTTGGGTGAGGGAGAGGATAGAAGTT AACGCTGAAAGGACTGCTCCTTTCTGCAAGTACTTTGAAAGTTACGATCG TGAGGGCTTAGACCACATACTCGCTCCAGGTGTTTACAATCTTGTAGACC TTCGTGTCTATGGAACCCGTCGTCAGTGGTGTCCGTATTTCTTGGCTAGG CATTCGATAATGATGGCTAATATATTGGTGTACTCTTACCACTATCTCCT GGATCCCAAGGTTGCAGGAGTCGTGTCATCCGAACTTCCCCCGGAGAGCG TTATCGTGTTTGACGAGGCACACAATATAGACAACGTATGTATAGAAGCC CTAAGCGTTGATCTGGAACAACCAACGATACGTGGGGCGCTTAGGAACAT TACTCAGTTGAATTCTGCAATATACCGCGCAAAGGAATCGGCTGTCGAGA GATTGAGAGGGGAGTATCGTCGTTTATCTTCTGGTTTACCTCTAGCCGAA TTGAACGCCCACGCTGCTCAGCCTGATGATGGTCGTGTTTTTGCAGGCGG AGAAGAAATACTCGCAGCTCCAGTTTTGCCTGGAGATATTCTTAGAGAAG CAGTCCCGGATTCTATACGAAAGGCAGAGGAATTTGTTGAGTTTCTCGAC AAGCTCACTCGATTTCTGGAAAAACGAGCAGACAAGGAGATTGTGACGCA AGAGCAACCCATTCCGTTTCTACGACAAATCGCCAGTGCATGCGCTGTAG AAGACAAGAAGGTTTTCAGAGCCACTTACGACCGTTTAATATCTCTGCTA ATGACCGTCCATGTTTCGAGTTGGTCTGAATTCAAGCCACTGCTAACCGT TGGGGACTTTATTACTATGCTTTCCACGTACGAAAAAGAGGGAATGGCTG TACTAACGGAACCTTACAATGACTTTACAGGTGATTACGAACCAGTGTTG CGATTGGCTTGCCTTGACGCCTCTTTGGCCGTGCGTTGGGTTATGAACCA TTTTAGGACCGTGGTAATCACTTCGGGAACTCTCAGCCCTCTCGATACAT ACCCCCGCATGCTAAACTTTTCAGTTACAGTTTCTGCAAGTTTCAACATG TCCATGGAAAGGAGATGTGTATGCCCGTTGATTATGACAAGAGGATCAGA TCAACTCGCGCTTAGCTCGAAGTACAACGCTCGCCAAACCTCCGATACTT CTCGGAACTATGGCCATGCCTTAATTGCTCTCGCCGGGTCTGTACCAGAT GGAATAGTTGTGTTTTTTGTGAGTTACGTGTTCATGCAACAAGTGGTAAA AGTGTGGACGGAGGAGGGAAACTTTCTGGATGAAATACGTAGATTGAAAC TTCTGTTCGTGGAAACTCAAGACCCAGTTGAAGCTTCGCTTGCAATCCAA AACTATAAAGCTGCCTGTGATAGCGGACGTGGAGCTATTTTGCTCAGTGT AGCGAGGGGGCGTGCAGCAGAGGGCATAGATTTTGATGGACAGTATGGCC GAGCAGTGATACTCTTTGGAGTTCCTTTCCAATACACCGAGTCCAGAGTG CTAAAAGCTCGCCTGCGGTTTCTGGCCGAAAATTATCAGATACAGGAAGA TGACTTTCTTGTCTTCGATGCGATGCGCCAGGCAGCTCAGTGTGCGGGAC GTGTAATTCGGAACAAGAATGACTACGGGATCGTTATCTTTGCGGACAAA AGATTTACCCGTGCCAAACTAAGAAGCAAGCTACCAAAATGGATTTCACA GTTTCTGTCTGCTGACTTTTTGGATCTTGATCTCGGTACCGCCATCGCCG AAGCACGAACTTTTCTGATTCAAATGGCGCAACCATCCGCCGCAAAGTCT CGGGAGGAAGAGAAGCGGCCAGAGCACTACGAATTCCTCGGTAGCTGA back to topprotein sequence of Gcaud8397.t1 >Gcaud8397.t1 ID=Gcaud8397.t1|Name=Gcaud8397.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=766bp
MVLVDIDGLQVVFPYPSLYPEQYSYMRELKRALECGGHALLEMPSGTGKT ITLLSLITAFLSTRSADKSVRKFVYCTRTVEEMQKVMNEMKVLVASRERE LGVPNDLVTVGLASRRHLCVHESVSRMEGSAVDSGCRALTSSWVRERIEV NAERTAPFCKYFESYDREGLDHILAPGVYNLVDLRVYGTRRQWCPYFLAR HSIMMANILVYSYHYLLDPKVAGVVSSELPPESVIVFDEAHNIDNVCIEA LSVDLEQPTIRGALRNITQLNSAIYRAKESAVERLRGEYRRLSSGLPLAE LNAHAAQPDDGRVFAGGEEILAAPVLPGDILREAVPDSIRKAEEFVEFLD KLTRFLEKRADKEIVTQEQPIPFLRQIASACAVEDKKVFRATYDRLISLL MTVHVSSWSEFKPLLTVGDFITMLSTYEKEGMAVLTEPYNDFTGDYEPVL RLACLDASLAVRWVMNHFRTVVITSGTLSPLDTYPRMLNFSVTVSASFNM SMERRCVCPLIMTRGSDQLALSSKYNARQTSDTSRNYGHALIALAGSVPD GIVVFFVSYVFMQQVVKVWTEEGNFLDEIRRLKLLFVETQDPVEASLAIQ NYKAACDSGRGAILLSVARGRAAEGIDFDGQYGRAVILFGVPFQYTESRV LKARLRFLAENYQIQEDDFLVFDAMRQAAQCAGRVIRNKNDYGIVIFADK RFTRAKLRSKLPKWISQFLSADFLDLDLGTAIAEARTFLIQMAQPSAAKS REEEKRPEHYEFLGS* back to topmRNA from alignment at NODE_1597_length_9575_cov_4.430620:6019..8483- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8397.t1 ID=Gcaud8397.t1|Name=Gcaud8397.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2465bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:6019..8483- (Gracilaria caudata M_176_S67 male) ATGGTGTTGGTGGACATCGACGGCCTGCAAGTGGTGTTCCCGTACCCGTC
TTTGTATCCCGAGCAGTATAGTTACATGAGGGAGCTCAAGCGGGCTCTTG
AATGCGGCGGCCATGCGCTTCTTGAGATGCCCAGTGGGACCGGGAAAACG
ATCACGCTGCTTTCTTTGATAACGGCTTTCCTATCCACGAGAAGTGCAGA
CAAGAGCGTTCGAAAATTTGTATACTGCACACGGACTGTTGAGGAGATGC
AGAAAGTAATGAATGAAATGAAGGTTCTTGTCGCGAGTAGAGAGAGAGAA
CTTGGAGTTCCAAATGACCTCGTCACGGTTGGATTGGCCTCTAGAAGACA
TTTGTGCGTCCACGAATCAGTTAGTCGCATGGAAGGTTCTGCAGTTGATA
GCGGTTGTCGCGCCTTGACATCGTCTTGGGTGAGGGAGAGGATAGAAGTT
AACGCTGAAAGGACTGCTCCTTTCTGCAAGTACTTTGAAAGTTACGATCG
TGAGGGCTTAGACCACATACTCGCTCCAGGTGTTTACAATCTTGTAGACC
TTCGTGTCTATGGAACCCGTCGTCAGTGGTGTCCGTATTTCTTGGCTAGG
CATTCGATAATGATGGCTAATATATTGGTGTACTCTTACCACTATCTCCT
GGATCCCAAGGTTGCAGGAGTCGTGTCATCCGAACTTCCCCCGGAGAGCG
TTATCGTGTTTGGTAAGTGACTACCTTCCCCCTGTATCCATCGAGAACTG
CATATCAGTATTTAACAGTATCCTGGATGCATAACAGACGAGGCACACAA
TATAGACAACGTATGTATAGAAGCCCTAAGCGTTGATCTGGAACAACCAA
CGATACGTGGGGCGCTTAGGAACATTACTCAGTTGAATTCTGCAATATAC
CGCGCAAAGGAATCGGCTGTCGAGAGATTGAGAGGGGAGTATCGTCGTTT
ATCTTCTGGTTTACCTCTAGCCGAATTGAACGCCCACGCTGCTCAGCCTG
ATGATGGTCGTGTTTTTGCAGGCGGAGAAGAAATACTCGCAGCTCCAGTT
TTGCCTGGAGATATTCTTAGAGAAGCAGTCCCGGATTCTATACGAAAGGC
AGAGGAATTTGTTGAGTTTCTCGACAAGCTCACTCGATTTCTGGAAAAAC
GAGCAGACAAGGAGATTGTGACGCAAGAGCAACCCATTCCGTTTCTACGA
CAAATCGCCAGTGCATGCGCTGTAGAAGACAAGAAGGTTTTCAGAGCCAC
TTACGACCGTTTAATATCTCTGCTAATGACCGTCCATGTTTCGAGTTGGT
CTGAATTCAAGCCACTGCTAACCGTTGGGGACTTTATTACTATGCTTTCC
ACGTACGAAAAAGAGGGAATGGCTGTACTAACGGAACCTTACAATGACTT
TACAGGTGATTACGAACCAGTGTTGCGATTGGCTTGCCTTGACGCCTCTT
TGGCCGTGCGTTGGGTTATGAACCATTTTAGGACCGTGGTAATCACTTCG
GGAACTCTCAGCCCTCTCGATACATACCCCCGCATGCTAAACTTTTCAGT
TACAGTTTCTGCAAGTTTCAACATGTCCATGGAAAGGAGATGTGTATGCC
CGTTGATTATGACAAGAGGATCAGATCAACTCGCGCTTAGCTCGAAGTAC
AACGCTCGCCAAACCTCCGATACTTCTCGGAACTATGGCCATGCCTTAAT
TGCTCTCGCCGGGTCTGTACCAGATGGAATAGTTGTGTTTTTTGTGAGTT
ACGTGTTCATGCAACAAGTGGTAAAAGTGTGGACGGAGGAGGGAAACTTT
CTGGATGAAATACGTAGATTGAAACTTCTGTTCGTGGAAACTCAAGACCC
AGTTGAAGCTTCGCTTGCAATCCAAAACTATAAAGCTGCCTGTGATAGCG
GACGTGGAGCTATTTTGCTCAGTGTAGCGAGGGGGCGTGCAGCAGAGGGC
ATAGATTTTGATGGACAGTATGGCCGAGCAGTGATACTCTTTGGAGTTCC
TTTCCAATACACCGAGTCCAGAGTGCTAAAAGCTCGCCTGCGGTTTCTGG
CCGAAAATTATCAGATACAGGAAGATGACTTTCTTGTCTTCGATGTAAGC
TCTCAACACCTCGCAGTTCTTTGACCTCTTGCATACCGAGAAATCTAACA
GGCAATCTCTTCCAATATTATTCAAATGCAAAACAGGCGATGCGCCAGGC
AGCTCAGTGTGCGGGACGTGTAATTCGGAACAAGAATGACTACGGGATCG
TTATCTTTGCGGACAAAAGATTTACCCGTGCCAAACTAAGAAGCAAGCTA
CCAAAATGGATTTCACAGTTTCTGTCTGCTGACTTTTTGGATCTTGATCT
CGGTACCGCCATCGCCGAAGCACGAACTTTTCTGATTCAAATGGCGCAAC
CATCCGCCGCAAAGTCTCGGGAGGAAGAGAAGCGGCCAGAGCACTACGAA
TTCCTCGGTAGCTGA back to topCoding sequence (CDS) from alignment at NODE_1597_length_9575_cov_4.430620:6019..8483- >Gcaud8397.t1 ID=Gcaud8397.t1|Name=Gcaud8397.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2298bp|location=Sequence derived from alignment at NODE_1597_length_9575_cov_4.430620:6019..8483- (Gracilaria caudata M_176_S67 male) ATGGTGTTGGTGGACATCGACGGCCTGCAAGTGGTGTTCCCGTACCCGTC TTTGTATCCCGAGCAGTATAGTTACATGAGGGAGCTCAAGCGGGCTCTTG AATGCGGCGGCCATGCGCTTCTTGAGATGCCCAGTGGGACCGGGAAAACG ATCACGCTGCTTTCTTTGATAACGGCTTTCCTATCCACGAGAAGTGCAGA CAAGAGCGTTCGAAAATTTGTATACTGCACACGGACTGTTGAGGAGATGC AGAAAGTAATGAATGAAATGAAGGTTCTTGTCGCGAGTAGAGAGAGAGAA CTTGGAGTTCCAAATGACCTCGTCACGGTTGGATTGGCCTCTAGAAGACA TTTGTGCGTCCACGAATCAGTTAGTCGCATGGAAGGTTCTGCAGTTGATA GCGGTTGTCGCGCCTTGACATCGTCTTGGGTGAGGGAGAGGATAGAAGTT AACGCTGAAAGGACTGCTCCTTTCTGCAAGTACTTTGAAAGTTACGATCG TGAGGGCTTAGACCACATACTCGCTCCAGGTGTTTACAATCTTGTAGACC TTCGTGTCTATGGAACCCGTCGTCAGTGGTGTCCGTATTTCTTGGCTAGG CATTCGATAATGATGGCTAATATATTGGTGTACTCTTACCACTATCTCCT GGATCCCAAGGTTGCAGGAGTCGTGTCATCCGAACTTCCCCCGGAGAGCG TTATCGTGTTTGACGAGGCACACAATATAGACAACGTATGTATAGAAGCC CTAAGCGTTGATCTGGAACAACCAACGATACGTGGGGCGCTTAGGAACAT TACTCAGTTGAATTCTGCAATATACCGCGCAAAGGAATCGGCTGTCGAGA GATTGAGAGGGGAGTATCGTCGTTTATCTTCTGGTTTACCTCTAGCCGAA TTGAACGCCCACGCTGCTCAGCCTGATGATGGTCGTGTTTTTGCAGGCGG AGAAGAAATACTCGCAGCTCCAGTTTTGCCTGGAGATATTCTTAGAGAAG CAGTCCCGGATTCTATACGAAAGGCAGAGGAATTTGTTGAGTTTCTCGAC AAGCTCACTCGATTTCTGGAAAAACGAGCAGACAAGGAGATTGTGACGCA AGAGCAACCCATTCCGTTTCTACGACAAATCGCCAGTGCATGCGCTGTAG AAGACAAGAAGGTTTTCAGAGCCACTTACGACCGTTTAATATCTCTGCTA ATGACCGTCCATGTTTCGAGTTGGTCTGAATTCAAGCCACTGCTAACCGT TGGGGACTTTATTACTATGCTTTCCACGTACGAAAAAGAGGGAATGGCTG TACTAACGGAACCTTACAATGACTTTACAGGTGATTACGAACCAGTGTTG CGATTGGCTTGCCTTGACGCCTCTTTGGCCGTGCGTTGGGTTATGAACCA TTTTAGGACCGTGGTAATCACTTCGGGAACTCTCAGCCCTCTCGATACAT ACCCCCGCATGCTAAACTTTTCAGTTACAGTTTCTGCAAGTTTCAACATG TCCATGGAAAGGAGATGTGTATGCCCGTTGATTATGACAAGAGGATCAGA TCAACTCGCGCTTAGCTCGAAGTACAACGCTCGCCAAACCTCCGATACTT CTCGGAACTATGGCCATGCCTTAATTGCTCTCGCCGGGTCTGTACCAGAT GGAATAGTTGTGTTTTTTGTGAGTTACGTGTTCATGCAACAAGTGGTAAA AGTGTGGACGGAGGAGGGAAACTTTCTGGATGAAATACGTAGATTGAAAC TTCTGTTCGTGGAAACTCAAGACCCAGTTGAAGCTTCGCTTGCAATCCAA AACTATAAAGCTGCCTGTGATAGCGGACGTGGAGCTATTTTGCTCAGTGT AGCGAGGGGGCGTGCAGCAGAGGGCATAGATTTTGATGGACAGTATGGCC GAGCAGTGATACTCTTTGGAGTTCCTTTCCAATACACCGAGTCCAGAGTG CTAAAAGCTCGCCTGCGGTTTCTGGCCGAAAATTATCAGATACAGGAAGA TGACTTTCTTGTCTTCGATGCGATGCGCCAGGCAGCTCAGTGTGCGGGAC GTGTAATTCGGAACAAGAATGACTACGGGATCGTTATCTTTGCGGACAAA AGATTTACCCGTGCCAAACTAAGAAGCAAGCTACCAAAATGGATTTCACA GTTTCTGTCTGCTGACTTTTTGGATCTTGATCTCGGTACCGCCATCGCCG AAGCACGAACTTTTCTGATTCAAATGGCGCAACCATCCGCCGCAAAGTCT CGGGAGGAAGAGAAGCGGCCAGAGCACTACGAATTCCTCGGTAGCTGA back to top
|