Gcaud8388.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8388.t1
Unique Name	Gcaud8388.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:19677..20609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4572.TRIUR3_08677-P1
PFAMs	RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14837
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	1.96e-28
EggNOG OGs	KOG0118@1\|root,KOG0118@2759\|Eukaryota,37SMA@33090\|Viridiplantae,3GGKR@35493\|Streptophyta,3KR3D@4447\|Liliopsida,3ICY2@38820\|Poales
Description	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG category	A
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8388	Gcaud8388	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 19677..20609 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8388.t1.stop1	Gcaud8388.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 19677..19679 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8388.t1.CDS1	Gcaud8388.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 19677..20609 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8388.t1.exon1	Gcaud8388.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 19677..20609 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8388.t1.start1	Gcaud8388.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 20607..20609 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8388.t1	Gcaud8388.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 19677..20609 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:19677..20609-
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:19677..20609-

mRNA sequence

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MGGSSQDVNKQSPWKRKRKLPHTYDRFKTPKRQKIDISQELKQLARSEPR
GMDAKQTLTSECQSQATGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHK
SATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSL
RAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSL
FVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVS
FDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKAFIKG
KRPFMPPTQR*

spliced messenger RNA

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:19677..20609- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGTTCTTCTCAAGATGTCAACAAGCAGAGCCCCTGGAAGAGGAA
AAGAAAGCTCCCACATACGTATGATCGCTTCAAAACCCCAAAGCGGCAGA
AAATAGACATATCTCAAGAACTGAAACAGCTGGCACGATCAGAACCACGA
GGGATGGACGCAAAACAAACCTTGACTTCAGAATGCCAGAGTCAAGCCAC
AGGCGTGCAACATCTTACTCTTGCTGCTGACCGCTCCGAAGAAAATGACT
TTGGCCAGAGCAGACACACTAGAACCTTGTTCGTTGGAAACGTTCACAAG
AGTGCTACAGGAAAGGACATTAAAAAGCTGTTTAAGCGCTTTGGGCCTAT
TGATTCTGTCAGGATCAGGGGCGTCATTTCCGAAGGTCGTAAGATACCTA
AAAAAGCAGCCTTCATAACAGGTCAGATCTCGAAAACGGTTGATTCTCTT
CGCGCCTATATCGTCTTCAAGCCACATCCAGAGTTACAAAGAACCATGGA
GAATGCTTGCCAAGAAATGAATATGACAGTATTTAAAGACAAGCACATAC
GAGTTATGCCCGCAGCGGTACAAAGAATAGGAAAGCAACGGATGAGTCTT
TTCGTGGGAAATCTTCCCTTTGATTGCGCCGAGGAAGAACTAATACAAGT
ATTTCTGCCTATTGCCGAAGAAAATGATGTGCAACTGGTCGGCGTTCGCT
GCAATCGAGATACTGACACAGGAGCTTGTAGAGGGGTTGGATTTGTGTCG
TTCGATGACGTGTTGGGGATTCAGGCTGCATTAAACAAGGCTGGTGAACT
CAAAATACGAGGTCGTGTTCTTCGAATGGAACAGGCCGATAAGATGAAAG
ACAAGAGGAGTAAGGTCTACAAAAGACATAAAAAAGCTTTCATTAAGGGA
AAGAGACCTTTCATGCCGCCAACGCAACGATGA

protein sequence of Gcaud8388.t1

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MGGSSQDVNKQSPWKRKRKLPHTYDRFKTPKRQKIDISQELKQLARSEPR
GMDAKQTLTSECQSQATGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHK
SATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSL
RAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSL
FVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVS
FDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKAFIKG
KRPFMPPTQR*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:19677..20609-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:19677..20609- (Gracilaria caudata M_176_S67 male)
ATGGGAGGTTCTTCTCAAGATGTCAACAAGCAGAGCCCCTGGAAGAGGAA
AAGAAAGCTCCCACATACGTATGATCGCTTCAAAACCCCAAAGCGGCAGA
AAATAGACATATCTCAAGAACTGAAACAGCTGGCACGATCAGAACCACGA
GGGATGGACGCAAAACAAACCTTGACTTCAGAATGCCAGAGTCAAGCCAC
AGGCGTGCAACATCTTACTCTTGCTGCTGACCGCTCCGAAGAAAATGACT
TTGGCCAGAGCAGACACACTAGAACCTTGTTCGTTGGAAACGTTCACAAG
AGTGCTACAGGAAAGGACATTAAAAAGCTGTTTAAGCGCTTTGGGCCTAT
TGATTCTGTCAGGATCAGGGGCGTCATTTCCGAAGGTCGTAAGATACCTA
AAAAAGCAGCCTTCATAACAGGTCAGATCTCGAAAACGGTTGATTCTCTT
CGCGCCTATATCGTCTTCAAGCCACATCCAGAGTTACAAAGAACCATGGA
GAATGCTTGCCAAGAAATGAATATGACAGTATTTAAAGACAAGCACATAC
GAGTTATGCCCGCAGCGGTACAAAGAATAGGAAAGCAACGGATGAGTCTT
TTCGTGGGAAATCTTCCCTTTGATTGCGCCGAGGAAGAACTAATACAAGT
ATTTCTGCCTATTGCCGAAGAAAATGATGTGCAACTGGTCGGCGTTCGCT
GCAATCGAGATACTGACACAGGAGCTTGTAGAGGGGTTGGATTTGTGTCG
TTCGATGACGTGTTGGGGATTCAGGCTGCATTAAACAAGGCTGGTGAACT
CAAAATACGAGGTCGTGTTCTTCGAATGGAACAGGCCGATAAGATGAAAG
ACAAGAGGAGTAAGGTCTACAAAAGACATAAAAAAGCTTTCATTAAGGGA
AAGAGACCTTTCATGCCGCCAACGCAACGATGA

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:19677..20609-

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:19677..20609- (Gracilaria caudata M_176_S67 male)
ATGGGAGGTTCTTCTCAAGATGTCAACAAGCAGAGCCCCTGGAAGAGGAA
AAGAAAGCTCCCACATACGTATGATCGCTTCAAAACCCCAAAGCGGCAGA
AAATAGACATATCTCAAGAACTGAAACAGCTGGCACGATCAGAACCACGA
GGGATGGACGCAAAACAAACCTTGACTTCAGAATGCCAGAGTCAAGCCAC
AGGCGTGCAACATCTTACTCTTGCTGCTGACCGCTCCGAAGAAAATGACT
TTGGCCAGAGCAGACACACTAGAACCTTGTTCGTTGGAAACGTTCACAAG
AGTGCTACAGGAAAGGACATTAAAAAGCTGTTTAAGCGCTTTGGGCCTAT
TGATTCTGTCAGGATCAGGGGCGTCATTTCCGAAGGTCGTAAGATACCTA
AAAAAGCAGCCTTCATAACAGGTCAGATCTCGAAAACGGTTGATTCTCTT
CGCGCCTATATCGTCTTCAAGCCACATCCAGAGTTACAAAGAACCATGGA
GAATGCTTGCCAAGAAATGAATATGACAGTATTTAAAGACAAGCACATAC
GAGTTATGCCCGCAGCGGTACAAAGAATAGGAAAGCAACGGATGAGTCTT
TTCGTGGGAAATCTTCCCTTTGATTGCGCCGAGGAAGAACTAATACAAGT
ATTTCTGCCTATTGCCGAAGAAAATGATGTGCAACTGGTCGGCGTTCGCT
GCAATCGAGATACTGACACAGGAGCTTGTAGAGGGGTTGGATTTGTGTCG
TTCGATGACGTGTTGGGGATTCAGGCTGCATTAAACAAGGCTGGTGAACT
CAAAATACGAGGTCGTGTTCTTCGAATGGAACAGGCCGATAAGATGAAAG
ACAAGAGGAGTAAGGTCTACAAAAGACATAAAAAAGCTTTCATTAAGGGA
AAGAGACCTTTCATGCCGCCAACGCAACGATGA