Gcaud8388.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8388.t1
Unique NameGcaud8388.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length311
Homology
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A2V3J3E8_9FLOR (RNA-binding protein 34 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3E8_9FLOR)

HSP 1 Score: 263 bits (673), Expect = 9.340e-84
Identity = 131/234 (55.98%), Postives = 171/234 (73.08%), Query Frame = 0
Query:   67 TGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKAFIKG 300
            TG +      +  EE +  +SR++RT+FVGNV  SA+  DI +LF RFG ++ VRIRG++S  RK PK+   I  Q ++ + + +AY+VFK H  +   +  AC++MNMTVFK+KHIRV PA    +G +RMSLFVGNLPFDC EEEL++ FLPIAEE+ V+LVGVRCNRD DTGA RGVGFV+FDD+LG+QAA NK GE+KIRGRVLR++ A K KD+R+K +KR  K    G
Sbjct:   64 TGGRTCDKDKEAEEEKETFKSRNSRTIFVGNVDMSASENDIARLFARFGEVEEVRIRGIVSNTRKRPKRKPAINNQTAEFLATGQAYVVFKNHERVYTCISEACKDMNMTVFKNKHIRVTPACETTVGPRRMSLFVGNLPFDCMEEELVEAFLPIAEESGVKLVGVRCNRDLDTGAGRGVGFVAFDDILGVQAARNKVGEIKIRGRVLRIDDASKKKDRRTKTFKRRTKPSRHG 297          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A7R9QET2_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QET2_9ACAR)

HSP 1 Score: 122 bits (305), Expect = 1.150e-28
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 0
Query:   88 RHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSK 288
            ++ RT+FVGN+ ++ T K +KKLFK FG I+S+R+RG + +  KIPKK A IT +   + D++ AY+VFK   ++ + +E     +N +     HIRV  A          S+FVGNLPF   E++L   F    E  D++   VR  RD  TG  +G GF++F     +  AL K  E K+ GR LR+ +A K +  RSK
Sbjct:   96 KNERTVFVGNLPQNITIKYLKKLFKNFGQIESIRLRGAVPQEEKIPKKVAVITKKFHASTDNINAYVVFKSSDDVIKALE-----LNGSEIDGHHIRVDRAVHSVTHDSSRSIFVGNLPFVVREDQLYDTF---KECGDIE--AVRVVRDAKTGVGKGFGFITFKSKDSVVLALEK-NEHKLNGRDLRVTRA-KNESNRSK 284          
BLAST of Gcaud8388.t1 vs. uniprot
Match: T2MFU0_HYDVU (RNA-binding protein 34 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MFU0_HYDVU)

HSP 1 Score: 120 bits (300), Expect = 9.670e-28
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 0
Query:   88 RHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRM-----EQADKMKDKRS 287
            R +RT+FVGNV    T KDIKKLF +FG I+++RIR V     K+PKK A +  +  K  DS+ AY+VFK     ++ +E+     N  + +  H+RV  A  Q++  Q++ LFVGNLPF  ++EEL   F       D++++     RD  TG  +G G+V F +  G+   L K  E   +GR LR+     E  +K K K S
Sbjct:  100 RLSRTIFVGNVSLKVTRKDIKKLFAKFGNIETIRIRSVPVAESKLPKKVALLQKKFHKERDSMNAYVVFKEKSSAEKALES-----NGYLLEGLHLRVDKADFQKVD-QKLCLFVGNLPFSLSDEELRSHFKDCGWIEDIRII-----RDKATGLGKGFGYVRFKNSDGVMLGL-KLHESDFKGRKLRVFRSRNENQEKRKSKPS 292          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A7I8VYQ4_9ANNE (DgyrCDS9880 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VYQ4_9ANNE)

HSP 1 Score: 117 bits (294), Expect = 2.360e-27
Identity = 71/212 (33.49%), Postives = 119/212 (56.13%), Query Frame = 0
Query:   77 DRSEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSK 288
            DR  +      +  RT+FVGN+ K    K++KKLF++ G ++S+R R  I E  K+PKKAA I  +I++  DSL AYIVF+    +   ++     +N T+ K+  +R+   + ++    + S+F+G LPFD  EE +   F     ++  Q++ VR  RD  TG  +G G++ F+D   ++ AL   G    +GR +R+++A K + + SK
Sbjct:   68 DRQLKKRRNADQEKRTVFVGNIPKDVDKKELKKLFRKCGKVESIRYRCAIPENPKLPKKAAAINRKINEKRDSLNAYIVFENEESIPTALK-----LNTTILKNHQLRI-DTSCKKQHDNKHSVFIGALPFDVKEETVRDTF-----QDCGQILNVRIIRDRKTGMGKGFGYILFNDKSSVELALKLDGS-DCQGRKIRVQRAVKKQKEASK 267          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A1Y1I6M9_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6M9_KLENI)

HSP 1 Score: 118 bits (296), Expect = 4.350e-26
Identity = 79/240 (32.92%), Postives = 129/240 (53.75%), Query Frame = 0
Query:   75 AADRSEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGK---------QRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQ--LVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKAFIKGKRP 303
            AA R + ++  + +  RT+FVGN+  S   K++KK F ++GP++SVR+R +  +  K+P+KAA +TGQ+S   DS+ AY+VF+     ++ + +     NM  +  +H+RV  AA  R  +         + +S+FVGNLPFD  +EE+I  F      +++Q  L  VR  RD  TG  +G+ +V F      + A+  A  + +R R LR+ +       R+K+     KA     RP
Sbjct:  300 AAKRRKRSE--KDKLPRTVFVGNLPASVKKKELKKEFAQYGPVESVRLRSLALQESKLPRKAAVLTGQVSDVKDSVNAYVVFEDEETSRKALAH-----NMKEYLGRHLRVDVAAPVRRAEGAAPSVEYDRLLSVFVGNLPFDVKDEEVIAAFSGAGAPSELQGALEAVRVVRDKATGLGKGIAYVMFKSRAASKVAI--ASSITVRDRPLRLTRPGAKLKARTKLTTSSGKARSASARP 530          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A2R6W3A4_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W3A4_MARPO)

HSP 1 Score: 118 bits (295), Expect = 6.560e-26
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 0
Query:   91 RTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQ---RMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQ 278
            RT+FVGNV  +   K +   F ++G ++S R+R V     K+P++AA ITG +++   SL  YIVFK     Q  + +     NM  F  KH+RV  A     G +   + S+F+GNLPFD  +E+LI +F     E +V+   VR  RD  T A +G GFV F   +G ++AL+K     ++ R LR+E+
Sbjct:  389 RTIFVGNVPVNVKAKHLSTEFSQYGAVESARLRSVPIVDVKMPRRAAVITGNLNENRTSLNGYIVFKEEASAQAALAH-----NMKEFAGKHLRVDLAGSYSSGVEYDRKRSIFIGNLPFDAEDEDLITLFQGNTPELEVE--AVRIVRDPQTSAGKGFGFVCFKTKMGAESALDKRDFTLLKNRPLRLER 572          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A2J7QU69_9NEOP (Uncharacterized protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QU69_9NEOP)

HSP 1 Score: 115 bits (288), Expect = 1.200e-25
Identity = 71/217 (32.72%), Postives = 120/217 (55.30%), Query Frame = 0
Query:   80 EENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKA 296
            E  D  + R  R++FVGNV  + T K ++KLF++FGP++SVR+R       ++PKK A I        +S+ A++ F      +  +E      N TVF+D HIRV  AA +    Q+ ++F+GN+PF   E++L ++F     E+  ++ G+R  RD  TG  +G  +++F+    ++ AL   GE ++  R LR+++  K   ++S   + HK A
Sbjct:  110 ENEDITKEREARSIFVGNVPHTITTKKLRKLFEKFGPVESVRLRCPPLADPRVPKKVAVIKRDFHPDRNSMHAFVRFVDVESARNALE-----FNGTVFEDHHIRVDMAAGKADHDQKKAVFLGNVPFAAEEDDLWKMF-----ESCGKISGIRLIRDKRTGIGKGFAYINFETADAVELALKLDGE-ELNKRKLRVQRCVKKPVRKSGTSREHKHA 315          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A7S4N4H5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N4H5_GUITH)

HSP 1 Score: 111 bits (277), Expect = 2.720e-25
Identity = 73/215 (33.95%), Postives = 113/215 (52.56%), Query Frame = 0
Query:   67 TGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADK 281
            TGV   +  +D +EE         RTLFVG V  ++T K IKK F+ FG I+SVR+R +     K+PKK +   G ++   ++  AY+ FK    + + +       N ++ +   I+V  A + +    R+S+FVGNLPF+  EE L + F    E  +V+++     RD  T   +G G+V+F +   +Q AL K  E K  GR LR+ +A K
Sbjct:   54 TGVDADSRESDGNEEEAL-----ERTLFVGGVPLASTRKSIKKFFQEFGFIESVRMRSIPISNPKLPKKTSIALGMVNSERETCNAYVRFKEKGSVAKALSK-----NGSLMEGHRIKVDHANISKNYNVRLSVFVGNLPFNAEEESLQKFFSNCGEVTNVRII-----RDKKTSLGKGFGYVTFTNAEEVQLALKKH-EAKFEGRALRVVRAAK 252          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A7S4MB18_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MB18_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.720e-24
Identity = 75/241 (31.12%), Postives = 123/241 (51.04%), Query Frame = 0
Query:   47 SEPRGMDAKQTLTSECQSQATGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMT--VFKDKHIRVMPAAVQRIGKQRMS-LFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQADKMKD 284
            SEP+  D   T+           Q +     + E     Q R+ RT+F+GN+      +++KK+FK FGPI+S+R R  +    K+PKK   I  Q ++ +D L AYIV+          ENA + ++M   +F ++H+RV  A+ +       S +F+GNLPFD  +E + + F    +   V++V     RD      +G G+V FD+ + ++ AL K    K+ GR +R+ +A + KD
Sbjct:   95 SEPKSTDLNATID----------QQMNDIKKQEEXEAARQERNRRTIFIGNLPTKTKNRELKKVFKPFGPIESIRFRSAVVASPKVPKKVTIIKKQFNEKLDDLHAYIVYA-------NPENAKEALSMNGEIFLERHLRVDLASHEHSRLNNSSTVFIGNLPFDIDDESVWEHFKDCGKVTAVRVV-----RDPQYRIGKGFGYVMFDNPIAVKNAL-KLENSKLCGRRIRVSKAVRSKD 312          
BLAST of Gcaud8388.t1 vs. uniprot
Match: A0A6P4DAA5_ARADU (RNA-binding protein 34 isoform X1 n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4DAA5_ARADU)

HSP 1 Score: 111 bits (277), Expect = 8.260e-24
Identity = 75/210 (35.71%), Postives = 106/210 (50.48%), Query Frame = 0
Query:   79 SEENDFGQSRHTRTLFVGNVHKSATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSLRAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQR---------IGKQRMSLFVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVSFDDVLGIQAALNKAGELKIRGRVLRMEQA 279
            S+E    + +  RT+FVGN+      K + K FK+FG ++SVRIR V  +  K P+K A +  +I+   DS+ AYIVFK     Q ++ +     NM V +  HIRV  A   R         +   + +LFVGNLPFD  +EEL Q+F  I       +  VR  RD      +G+ +V F       +AL K   LK+R R LR+  A
Sbjct:  181 SKEGFDDEEKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSH-----NMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLG-TSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSALKKRN-LKLRDRELRLSHA 383          
The following BLAST results are available for this feature:
BLAST of Gcaud8388.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3E8_9FLOR9.340e-8455.98RNA-binding protein 34 n=1 Tax=Gracilariopsis chor... [more]
A0A7R9QET2_9ACAR1.150e-2838.81Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
T2MFU0_HYDVU9.670e-2838.05RNA-binding protein 34 n=2 Tax=Hydra vulgaris TaxI... [more]
A0A7I8VYQ4_9ANNE2.360e-2733.49DgyrCDS9880 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A1Y1I6M9_KLENI4.350e-2632.92Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2R6W3A4_MARPO6.560e-2637.17Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A2J7QU69_9NEOP1.200e-2532.72Uncharacterized protein n=2 Tax=Cryptotermes secun... [more]
A0A7S4N4H5_GUITH2.720e-2533.95Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4MB18_9EUKA1.720e-2431.12Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6P4DAA5_ARADU8.260e-2435.71RNA-binding protein 34 isoform X1 n=5 Tax=Arachis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 92..186
e-value: 6.5E-4
score: 29.0
coord: 199..277
e-value: 1.2E-13
score: 61.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 200..275
e-value: 1.6E-11
score: 43.9
coord: 93..129
e-value: 4.5E-6
score: 26.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 198..281
score: 14.385262
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 91..190
score: 10.547798
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 194..298
e-value: 1.5E-17
score: 65.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 74..193
e-value: 2.2E-14
score: 55.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR23236:SF25RNA-BINDING PROTEIN 34coord: 22..287
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 22..287
IPR034220RBM34, RNA recognition motif 1CDDcd12394RRM1_RBM34coord: 91..185
e-value: 5.77605E-27
score: 99.2566
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 76..192
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 196..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:19677..20609 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8388.t1Gcaud8388.t1Gracilaria caudata M_176_S67 malemRNANODE_406_length_26511_cov_4.568963 19677..20609 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8388.t1 ID=Gcaud8388.t1|Name=Gcaud8388.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MGGSSQDVNKQSPWKRKRKLPHTYDRFKTPKRQKIDISQELKQLARSEPR
GMDAKQTLTSECQSQATGVQHLTLAADRSEENDFGQSRHTRTLFVGNVHK
SATGKDIKKLFKRFGPIDSVRIRGVISEGRKIPKKAAFITGQISKTVDSL
RAYIVFKPHPELQRTMENACQEMNMTVFKDKHIRVMPAAVQRIGKQRMSL
FVGNLPFDCAEEELIQVFLPIAEENDVQLVGVRCNRDTDTGACRGVGFVS
FDDVLGIQAALNKAGELKIRGRVLRMEQADKMKDKRSKVYKRHKKAFIKG
KRPFMPPTQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034220RBM34_RRM1
IPR035979RBD_domain_sf