Gcaud8381.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8381.t1
Unique NameGcaud8381.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4885_length_1914_cov_5.322545contigNODE_4885_length_1914_cov_5.322545:2..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121380.JNIW01000023_gene185
PFAMsAPH
Max annot lvl2|Bacteria
Evalue1.03e-06
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8381Gcaud8381Gracilaria caudata M_176_S67 malegeneNODE_4885_length_1914_cov_5.322545 2..541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8381.t1.CDS1Gcaud8381.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4885_length_1914_cov_5.322545 2..541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8381.t1.exon1Gcaud8381.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4885_length_1914_cov_5.322545 2..541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8381.t1.stop1Gcaud8381.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4885_length_1914_cov_5.322545 539..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8381.t1Gcaud8381.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4885_length_1914_cov_5.322545 2..541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8381.t1 ID=Gcaud8381.t1|Name=Gcaud8381.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
GKLKGFLQEMVSDAEWKAVLSDELSEARDVIGCSADEVGDMLVSYSQWLY
GKASAYNIPMTIVHGDLCAANVVLNSNDRFTFIDFSSTCISFPFRDAAYF
VVSCEASEDDIGSYFDLWTEYESIERMKELFRIYILLMMLDAVYMSYRFY
IIAEHGQRVSTYSDLRALMRILLRKVLAF*
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spliced messenger RNA

>Gcaud8381.t1 ID=Gcaud8381.t1|Name=Gcaud8381.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_4885_length_1914_cov_5.322545:2..541+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GGTAAGCTAAAAGGGTTTTTGCAGGAAATGGTATCTGATGCAGAGTGGAA
AGCTGTGCTTTCCGATGAACTTAGCGAAGCTCGAGACGTTATCGGCTGTA
GCGCCGACGAGGTTGGCGATATGCTCGTTTCTTACTCGCAATGGTTGTAC
GGGAAAGCATCAGCGTACAATATCCCAATGACAATTGTGCATGGAGATCT
TTGTGCTGCGAACGTCGTGCTTAATTCGAACGATCGATTTACTTTCATTG
ATTTTAGTTCTACATGTATCTCGTTTCCATTTAGAGATGCTGCATACTTT
GTGGTTTCTTGCGAAGCATCTGAAGATGATATAGGTTCTTATTTCGATTT
GTGGACGGAGTACGAGAGTATCGAAAGAATGAAAGAATTGTTCCGGATTT
ACATTCTTCTGATGATGTTAGATGCCGTGTATATGTCCTATAGGTTCTAC
ATCATTGCAGAGCATGGTCAAAGAGTCTCGACATATTCAGATCTTCGAGC
TTTAATGCGCATATTGTTGAGAAAAGTCCTAGCCTTTTAG
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protein sequence of Gcaud8381.t1

>Gcaud8381.t1 ID=Gcaud8381.t1|Name=Gcaud8381.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
GKLKGFLQEMVSDAEWKAVLSDELSEARDVIGCSADEVGDMLVSYSQWLY
GKASAYNIPMTIVHGDLCAANVVLNSNDRFTFIDFSSTCISFPFRDAAYF
VVSCEASEDDIGSYFDLWTEYESIERMKELFRIYILLMMLDAVYMSYRFY
IIAEHGQRVSTYSDLRALMRILLRKVLAF*
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mRNA from alignment at NODE_4885_length_1914_cov_5.322545:2..541+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8381.t1 ID=Gcaud8381.t1|Name=Gcaud8381.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_4885_length_1914_cov_5.322545:2..541+ (Gracilaria caudata M_176_S67 male)
GGTAAGCTAAAAGGGTTTTTGCAGGAAATGGTATCTGATGCAGAGTGGAA
AGCTGTGCTTTCCGATGAACTTAGCGAAGCTCGAGACGTTATCGGCTGTA
GCGCCGACGAGGTTGGCGATATGCTCGTTTCTTACTCGCAATGGTTGTAC
GGGAAAGCATCAGCGTACAATATCCCAATGACAATTGTGCATGGAGATCT
TTGTGCTGCGAACGTCGTGCTTAATTCGAACGATCGATTTACTTTCATTG
ATTTTAGTTCTACATGTATCTCGTTTCCATTTAGAGATGCTGCATACTTT
GTGGTTTCTTGCGAAGCATCTGAAGATGATATAGGTTCTTATTTCGATTT
GTGGACGGAGTACGAGAGTATCGAAAGAATGAAAGAATTGTTCCGGATTT
ACATTCTTCTGATGATGTTAGATGCCGTGTATATGTCCTATAGGTTCTAC
ATCATTGCAGAGCATGGTCAAAGAGTCTCGACATATTCAGATCTTCGAGC
TTTAATGCGCATATTGTTGAGAAAAGTCCTAGCCTTTTAG
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Coding sequence (CDS) from alignment at NODE_4885_length_1914_cov_5.322545:2..541+

>Gcaud8381.t1 ID=Gcaud8381.t1|Name=Gcaud8381.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_4885_length_1914_cov_5.322545:2..541+ (Gracilaria caudata M_176_S67 male)
GGTAAGCTAAAAGGGTTTTTGCAGGAAATGGTATCTGATGCAGAGTGGAA
AGCTGTGCTTTCCGATGAACTTAGCGAAGCTCGAGACGTTATCGGCTGTA
GCGCCGACGAGGTTGGCGATATGCTCGTTTCTTACTCGCAATGGTTGTAC
GGGAAAGCATCAGCGTACAATATCCCAATGACAATTGTGCATGGAGATCT
TTGTGCTGCGAACGTCGTGCTTAATTCGAACGATCGATTTACTTTCATTG
ATTTTAGTTCTACATGTATCTCGTTTCCATTTAGAGATGCTGCATACTTT
GTGGTTTCTTGCGAAGCATCTGAAGATGATATAGGTTCTTATTTCGATTT
GTGGACGGAGTACGAGAGTATCGAAAGAATGAAAGAATTGTTCCGGATTT
ACATTCTTCTGATGATGTTAGATGCCGTGTATATGTCCTATAGGTTCTAC
ATCATTGCAGAGCATGGTCAAAGAGTCTCGACATATTCAGATCTTCGAGC
TTTAATGCGCATATTGTTGAGAAAAGTCCTAGCCTTTTAG
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