Gcaud8309.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8309.t1
Unique Name	Gcaud8309.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_790_length_17954_cov_4.439568	contig	NODE_790_length_17954_cov_4.439568:11102..13006 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8309	Gcaud8309	Gracilaria caudata M_176_S67 male	gene	NODE_790_length_17954_cov_4.439568 11102..13006 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8309.t1.start1	Gcaud8309.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_790_length_17954_cov_4.439568 11102..11104 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8309.t1.CDS1	Gcaud8309.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_790_length_17954_cov_4.439568 11102..13006 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8309.t1.exon1	Gcaud8309.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_790_length_17954_cov_4.439568 11102..13006 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8309.t1.stop1	Gcaud8309.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_790_length_17954_cov_4.439568 13004..13006 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8309.t1	Gcaud8309.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_790_length_17954_cov_4.439568 11102..13006 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+
coding sequence from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+

mRNA sequence

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=635bp
MIIAPSWTQTSDERDNDNGDGGELQRQPLPSLNVMENCLDDDPIVTSSTS
NNTSDVSSTFHVPPKPPLPPLIPDCRDSESIPTSSTSRRTSSLSPTVRLA
PTPSLPPPAAAIGSDLGQTPSVCHKDPCLSEAAAKLLGKHVPDNTLRANS
TAFFAFTEFVIEGFNLWISEKQIALKDRSTPPWKKKCLREEAVGLISICL
FRTEDSFSLPQNTSLWTDKQLQRLNTVLIEFMATRKSQREDKDLSPSTLK
SYVAGLQRALKERWGYDLNLFNGRVFSDPQKGLVTALDNKIRQQQALGHC
RKSHNLLSEKNIYDLYASLELSMSHPRVYITRIICNVAIMTAFRKSELLE
LRVQDVTKVTEGEEMVIRIVGRIGSPDGASKTQSGGLKRLNSKPKEVYIW
NRSQLNGSVNVYAEVSEYLELVSKIRKPHEKIFCAENYKAKGRENFFKAQ
NISDSTMVRYVTDAFKANKIVGVGERASMTMHGLRSTVITQLFRAGMGDS
VSLRYGHRDPRSFQSYTNLRGTLGKRQQEGILGNFQENPTKRMASVSKGD
AALSFGVRGSDEVCSEDKENCARNEVINLVEGEAVSTKFDAAVREPEVVL
PSFLRNHGHFSGNVTINVDYGVGAGKIARGGSEK*

spliced messenger RNA

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATCGCTCCATCGTGGACACAAACATCCGACGAAAGAGATAATGA
CAATGGCGATGGAGGCGAACTTCAACGTCAACCATTGCCCTCACTGAACG
TAATGGAGAACTGTCTTGACGACGACCCAATCGTCACGAGCAGCACCTCA
AACAATACCTCAGATGTCAGCTCCACCTTCCACGTTCCCCCGAAACCACC
GCTCCCGCCGCTTATCCCCGACTGCCGCGACAGTGAAAGCATCCCGACAT
CCAGCACCTCGAGAAGAACATCCAGCTTGAGCCCTACCGTTCGTCTCGCC
CCCACACCATCCCTACCACCACCTGCCGCCGCCATCGGCTCTGATCTTGG
GCAAACGCCCAGCGTCTGTCATAAAGACCCGTGCCTTTCTGAGGCTGCGG
CAAAGCTGTTAGGAAAGCATGTCCCCGACAACACACTACGCGCGAACAGC
ACAGCATTTTTCGCGTTCACCGAATTTGTGATCGAGGGGTTCAATCTATG
GATCTCAGAGAAGCAAATTGCTCTGAAGGACAGAAGCACTCCCCCGTGGA
AGAAGAAGTGTTTGCGTGAGGAAGCCGTTGGGCTAATATCGATTTGTTTG
TTTCGAACTGAAGACAGCTTCAGTCTACCGCAGAATACTTCTTTATGGAC
GGACAAACAGTTGCAGCGTCTCAACACGGTACTTATCGAATTTATGGCAA
CCAGGAAGAGCCAGCGGGAGGACAAAGATCTTAGCCCATCTACATTGAAG
TCGTATGTCGCAGGGCTGCAGCGTGCGCTGAAGGAAAGGTGGGGATATGA
TTTGAATCTCTTTAATGGAAGGGTATTCTCAGATCCACAGAAGGGCTTGG
TTACTGCGTTGGACAACAAAATTCGCCAGCAGCAAGCCCTGGGACACTGT
CGGAAGAGCCATAACCTCTTGTCCGAGAAGAATATCTACGATCTGTACGC
CTCTTTGGAGCTCTCCATGTCACACCCTCGCGTATATATTACGAGGATAA
TTTGTAATGTTGCAATCATGACTGCGTTCCGCAAAAGCGAGCTTCTGGAA
CTTCGAGTACAGGATGTTACCAAAGTAACAGAAGGTGAAGAAATGGTTAT
TCGCATTGTCGGGAGAATTGGCAGTCCGGACGGAGCTTCGAAGACGCAAT
CAGGTGGTCTGAAACGGTTGAATTCGAAGCCGAAGGAGGTCTATATTTGG
AATCGTAGCCAACTGAACGGTTCAGTCAATGTCTACGCGGAAGTTTCAGA
ATATCTCGAGTTGGTTAGCAAGATTCGCAAACCCCACGAGAAGATCTTTT
GCGCAGAGAACTACAAGGCGAAAGGTCGAGAAAATTTCTTCAAGGCACAG
AACATTAGTGACAGCACGATGGTACGCTATGTTACAGACGCTTTTAAGGC
CAACAAAATTGTTGGTGTAGGTGAACGTGCGTCTATGACGATGCATGGAT
TGAGGTCTACCGTAATCACGCAACTGTTCAGAGCTGGCATGGGCGATAGT
GTTTCTCTTAGATATGGACATCGCGATCCGAGGTCGTTTCAGTCGTATAC
TAATTTGCGTGGGACGCTCGGAAAGCGTCAACAGGAAGGTATCTTGGGGA
ACTTTCAGGAAAATCCTACAAAGCGAATGGCTTCCGTTTCTAAGGGTGAC
GCTGCGCTCAGTTTTGGTGTACGCGGAAGCGATGAAGTTTGTTCTGAAGA
TAAGGAGAACTGTGCTAGAAACGAAGTGATAAACTTGGTGGAAGGAGAAG
CTGTTTCTACGAAGTTTGATGCTGCTGTGCGGGAGCCTGAAGTTGTTTTG
CCTTCATTTCTGCGGAATCATGGACATTTTTCTGGGAACGTCACCATTAA
TGTGGACTATGGTGTGGGAGCTGGAAAGATCGCGCGCGGGGGAAGCGAGA
AGTGA

protein sequence of Gcaud8309.t1

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MIIAPSWTQTSDERDNDNGDGGELQRQPLPSLNVMENCLDDDPIVTSSTS
NNTSDVSSTFHVPPKPPLPPLIPDCRDSESIPTSSTSRRTSSLSPTVRLA
PTPSLPPPAAAIGSDLGQTPSVCHKDPCLSEAAAKLLGKHVPDNTLRANS
TAFFAFTEFVIEGFNLWISEKQIALKDRSTPPWKKKCLREEAVGLISICL
FRTEDSFSLPQNTSLWTDKQLQRLNTVLIEFMATRKSQREDKDLSPSTLK
SYVAGLQRALKERWGYDLNLFNGRVFSDPQKGLVTALDNKIRQQQALGHC
RKSHNLLSEKNIYDLYASLELSMSHPRVYITRIICNVAIMTAFRKSELLE
LRVQDVTKVTEGEEMVIRIVGRIGSPDGASKTQSGGLKRLNSKPKEVYIW
NRSQLNGSVNVYAEVSEYLELVSKIRKPHEKIFCAENYKAKGRENFFKAQ
NISDSTMVRYVTDAFKANKIVGVGERASMTMHGLRSTVITQLFRAGMGDS
VSLRYGHRDPRSFQSYTNLRGTLGKRQQEGILGNFQENPTKRMASVSKGD
AALSFGVRGSDEVCSEDKENCARNEVINLVEGEAVSTKFDAAVREPEVVL
PSFLRNHGHFSGNVTINVDYGVGAGKIARGGSEK*

mRNA from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+ (Gracilaria caudata M_176_S67 male)
ATGATTATCGCTCCATCGTGGACACAAACATCCGACGAAAGAGATAATGA
CAATGGCGATGGAGGCGAACTTCAACGTCAACCATTGCCCTCACTGAACG
TAATGGAGAACTGTCTTGACGACGACCCAATCGTCACGAGCAGCACCTCA
AACAATACCTCAGATGTCAGCTCCACCTTCCACGTTCCCCCGAAACCACC
GCTCCCGCCGCTTATCCCCGACTGCCGCGACAGTGAAAGCATCCCGACAT
CCAGCACCTCGAGAAGAACATCCAGCTTGAGCCCTACCGTTCGTCTCGCC
CCCACACCATCCCTACCACCACCTGCCGCCGCCATCGGCTCTGATCTTGG
GCAAACGCCCAGCGTCTGTCATAAAGACCCGTGCCTTTCTGAGGCTGCGG
CAAAGCTGTTAGGAAAGCATGTCCCCGACAACACACTACGCGCGAACAGC
ACAGCATTTTTCGCGTTCACCGAATTTGTGATCGAGGGGTTCAATCTATG
GATCTCAGAGAAGCAAATTGCTCTGAAGGACAGAAGCACTCCCCCGTGGA
AGAAGAAGTGTTTGCGTGAGGAAGCCGTTGGGCTAATATCGATTTGTTTG
TTTCGAACTGAAGACAGCTTCAGTCTACCGCAGAATACTTCTTTATGGAC
GGACAAACAGTTGCAGCGTCTCAACACGGTACTTATCGAATTTATGGCAA
CCAGGAAGAGCCAGCGGGAGGACAAAGATCTTAGCCCATCTACATTGAAG
TCGTATGTCGCAGGGCTGCAGCGTGCGCTGAAGGAAAGGTGGGGATATGA
TTTGAATCTCTTTAATGGAAGGGTATTCTCAGATCCACAGAAGGGCTTGG
TTACTGCGTTGGACAACAAAATTCGCCAGCAGCAAGCCCTGGGACACTGT
CGGAAGAGCCATAACCTCTTGTCCGAGAAGAATATCTACGATCTGTACGC
CTCTTTGGAGCTCTCCATGTCACACCCTCGCGTATATATTACGAGGATAA
TTTGTAATGTTGCAATCATGACTGCGTTCCGCAAAAGCGAGCTTCTGGAA
CTTCGAGTACAGGATGTTACCAAAGTAACAGAAGGTGAAGAAATGGTTAT
TCGCATTGTCGGGAGAATTGGCAGTCCGGACGGAGCTTCGAAGACGCAAT
CAGGTGGTCTGAAACGGTTGAATTCGAAGCCGAAGGAGGTCTATATTTGG
AATCGTAGCCAACTGAACGGTTCAGTCAATGTCTACGCGGAAGTTTCAGA
ATATCTCGAGTTGGTTAGCAAGATTCGCAAACCCCACGAGAAGATCTTTT
GCGCAGAGAACTACAAGGCGAAAGGTCGAGAAAATTTCTTCAAGGCACAG
AACATTAGTGACAGCACGATGGTACGCTATGTTACAGACGCTTTTAAGGC
CAACAAAATTGTTGGTGTAGGTGAACGTGCGTCTATGACGATGCATGGAT
TGAGGTCTACCGTAATCACGCAACTGTTCAGAGCTGGCATGGGCGATAGT
GTTTCTCTTAGATATGGACATCGCGATCCGAGGTCGTTTCAGTCGTATAC
TAATTTGCGTGGGACGCTCGGAAAGCGTCAACAGGAAGGTATCTTGGGGA
ACTTTCAGGAAAATCCTACAAAGCGAATGGCTTCCGTTTCTAAGGGTGAC
GCTGCGCTCAGTTTTGGTGTACGCGGAAGCGATGAAGTTTGTTCTGAAGA
TAAGGAGAACTGTGCTAGAAACGAAGTGATAAACTTGGTGGAAGGAGAAG
CTGTTTCTACGAAGTTTGATGCTGCTGTGCGGGAGCCTGAAGTTGTTTTG
CCTTCATTTCTGCGGAATCATGGACATTTTTCTGGGAACGTCACCATTAA
TGTGGACTATGGTGTGGGAGCTGGAAAGATCGCGCGCGGGGGAAGCGAGA
AGTGA

Coding sequence (CDS) from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1905bp|location=Sequence derived from alignment at NODE_790_length_17954_cov_4.439568:11102..13006+ (Gracilaria caudata M_176_S67 male)
ATGATTATCGCTCCATCGTGGACACAAACATCCGACGAAAGAGATAATGA
CAATGGCGATGGAGGCGAACTTCAACGTCAACCATTGCCCTCACTGAACG
TAATGGAGAACTGTCTTGACGACGACCCAATCGTCACGAGCAGCACCTCA
AACAATACCTCAGATGTCAGCTCCACCTTCCACGTTCCCCCGAAACCACC
GCTCCCGCCGCTTATCCCCGACTGCCGCGACAGTGAAAGCATCCCGACAT
CCAGCACCTCGAGAAGAACATCCAGCTTGAGCCCTACCGTTCGTCTCGCC
CCCACACCATCCCTACCACCACCTGCCGCCGCCATCGGCTCTGATCTTGG
GCAAACGCCCAGCGTCTGTCATAAAGACCCGTGCCTTTCTGAGGCTGCGG
CAAAGCTGTTAGGAAAGCATGTCCCCGACAACACACTACGCGCGAACAGC
ACAGCATTTTTCGCGTTCACCGAATTTGTGATCGAGGGGTTCAATCTATG
GATCTCAGAGAAGCAAATTGCTCTGAAGGACAGAAGCACTCCCCCGTGGA
AGAAGAAGTGTTTGCGTGAGGAAGCCGTTGGGCTAATATCGATTTGTTTG
TTTCGAACTGAAGACAGCTTCAGTCTACCGCAGAATACTTCTTTATGGAC
GGACAAACAGTTGCAGCGTCTCAACACGGTACTTATCGAATTTATGGCAA
CCAGGAAGAGCCAGCGGGAGGACAAAGATCTTAGCCCATCTACATTGAAG
TCGTATGTCGCAGGGCTGCAGCGTGCGCTGAAGGAAAGGTGGGGATATGA
TTTGAATCTCTTTAATGGAAGGGTATTCTCAGATCCACAGAAGGGCTTGG
TTACTGCGTTGGACAACAAAATTCGCCAGCAGCAAGCCCTGGGACACTGT
CGGAAGAGCCATAACCTCTTGTCCGAGAAGAATATCTACGATCTGTACGC
CTCTTTGGAGCTCTCCATGTCACACCCTCGCGTATATATTACGAGGATAA
TTTGTAATGTTGCAATCATGACTGCGTTCCGCAAAAGCGAGCTTCTGGAA
CTTCGAGTACAGGATGTTACCAAAGTAACAGAAGGTGAAGAAATGGTTAT
TCGCATTGTCGGGAGAATTGGCAGTCCGGACGGAGCTTCGAAGACGCAAT
CAGGTGGTCTGAAACGGTTGAATTCGAAGCCGAAGGAGGTCTATATTTGG
AATCGTAGCCAACTGAACGGTTCAGTCAATGTCTACGCGGAAGTTTCAGA
ATATCTCGAGTTGGTTAGCAAGATTCGCAAACCCCACGAGAAGATCTTTT
GCGCAGAGAACTACAAGGCGAAAGGTCGAGAAAATTTCTTCAAGGCACAG
AACATTAGTGACAGCACGATGGTACGCTATGTTACAGACGCTTTTAAGGC
CAACAAAATTGTTGGTGTAGGTGAACGTGCGTCTATGACGATGCATGGAT
TGAGGTCTACCGTAATCACGCAACTGTTCAGAGCTGGCATGGGCGATAGT
GTTTCTCTTAGATATGGACATCGCGATCCGAGGTCGTTTCAGTCGTATAC
TAATTTGCGTGGGACGCTCGGAAAGCGTCAACAGGAAGGTATCTTGGGGA
ACTTTCAGGAAAATCCTACAAAGCGAATGGCTTCCGTTTCTAAGGGTGAC
GCTGCGCTCAGTTTTGGTGTACGCGGAAGCGATGAAGTTTGTTCTGAAGA
TAAGGAGAACTGTGCTAGAAACGAAGTGATAAACTTGGTGGAAGGAGAAG
CTGTTTCTACGAAGTTTGATGCTGCTGTGCGGGAGCCTGAAGTTGTTTTG
CCTTCATTTCTGCGGAATCATGGACATTTTTCTGGGAACGTCACCATTAA
TGTGGACTATGGTGTGGGAGCTGGAAAGATCGCGCGCGGGGGAAGCGAGA
AGTGA