Gcaud8309.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8309.t1
Unique NameGcaud8309.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length635
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud8309.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002104Integrase, catalytic domainPFAMPF00589Phage_integrasecoord: 309..519
e-value: 1.2E-10
score: 41.5
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 304..519
e-value: 2.4E-15
score: 58.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..60
NoneNo IPR availableCDDcd00397DNA_BRE_Ccoord: 332..517
e-value: 5.09433E-11
score: 59.8011
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 315..521

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_790_length_17954_cov_4.439568contigNODE_790_length_17954_cov_4.439568:11102..13006 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8309.t1Gcaud8309.t1Gracilaria caudata M_176_S67 malemRNANODE_790_length_17954_cov_4.439568 11102..13006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8309.t1 ID=Gcaud8309.t1|Name=Gcaud8309.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=635bp
MIIAPSWTQTSDERDNDNGDGGELQRQPLPSLNVMENCLDDDPIVTSSTS
NNTSDVSSTFHVPPKPPLPPLIPDCRDSESIPTSSTSRRTSSLSPTVRLA
PTPSLPPPAAAIGSDLGQTPSVCHKDPCLSEAAAKLLGKHVPDNTLRANS
TAFFAFTEFVIEGFNLWISEKQIALKDRSTPPWKKKCLREEAVGLISICL
FRTEDSFSLPQNTSLWTDKQLQRLNTVLIEFMATRKSQREDKDLSPSTLK
SYVAGLQRALKERWGYDLNLFNGRVFSDPQKGLVTALDNKIRQQQALGHC
RKSHNLLSEKNIYDLYASLELSMSHPRVYITRIICNVAIMTAFRKSELLE
LRVQDVTKVTEGEEMVIRIVGRIGSPDGASKTQSGGLKRLNSKPKEVYIW
NRSQLNGSVNVYAEVSEYLELVSKIRKPHEKIFCAENYKAKGRENFFKAQ
NISDSTMVRYVTDAFKANKIVGVGERASMTMHGLRSTVITQLFRAGMGDS
VSLRYGHRDPRSFQSYTNLRGTLGKRQQEGILGNFQENPTKRMASVSKGD
AALSFGVRGSDEVCSEDKENCARNEVINLVEGEAVSTKFDAAVREPEVVL
PSFLRNHGHFSGNVTINVDYGVGAGKIARGGSEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002104Integrase_catalytic
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz