Gcaud8301.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8301.t1
Unique NameGcaud8301.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1612_length_9489_cov_4.304852contigNODE_1612_length_9489_cov_4.304852:6387..7703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8301Gcaud8301Gracilaria caudata M_176_S67 malegeneNODE_1612_length_9489_cov_4.304852 6387..7703 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1.stop1Gcaud8301.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1612_length_9489_cov_4.304852 6387..6389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1.CDS1Gcaud8301.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1612_length_9489_cov_4.304852 6387..7703 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1.exon1Gcaud8301.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1612_length_9489_cov_4.304852 6387..7703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1.start1Gcaud8301.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1612_length_9489_cov_4.304852 7701..7703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1Gcaud8301.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1612_length_9489_cov_4.304852 6387..7703 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MSPLLLLSVLAFLQTQAQLVCNELNIFPHVVCEEFSGSQCASAAQFGCVT
IDNKTCALNPTLASANFCSDNRYPVTSFILSPNSSVEFRLTVNVDQSRVV
LFLIDASPSMREQLPEVVAELSLLAESLISELSASIEISIYAGEESFTSP
ASQMRLQAATNNITAVQEALAIIPDLQLSSGPRTLLQALHDNILSIVCGP
NVIIVVGNTPGREPPCRADDIREFVDRSNALRPDFCFAPGTTIPTASLVA
VSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVS
TCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRF
MLPVSTLLRDLDPPLPPGRGDDCGDRVVISSPELPMNIAALSFNTFPMAV
SLSHNACENGPFVCTLIIHLVRIALFRDEQRFLVRACL*
back to top

spliced messenger RNA

>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:6387..7703- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCTTTACTCCTTCTTTCCGTTTTGGCTTTCCTTCAAACACAAGC
TCAGCTAGTGTGCAATGAATTGAATATCTTTCCTCATGTAGTCTGCGAGG
AATTCTCTGGATCTCAATGCGCATCTGCCGCTCAGTTTGGATGTGTTACT
ATCGATAACAAAACATGTGCTCTCAATCCTACACTCGCTTCTGCAAACTT
TTGTTCCGATAACCGATACCCAGTCACTAGTTTCATTCTGTCACCCAACT
CATCGGTCGAGTTCAGGCTCACCGTCAATGTCGATCAATCTCGCGTCGTA
CTCTTTTTGATTGATGCCTCTCCATCAATGCGTGAACAACTTCCCGAAGT
GGTCGCGGAGTTATCACTTCTGGCGGAATCCTTGATTTCAGAACTTTCTG
CATCCATTGAGATCTCTATATACGCTGGAGAAGAATCGTTTACAAGTCCT
GCGTCACAGATGCGGTTGCAAGCCGCTACCAACAACATCACTGCTGTTCA
GGAAGCTCTTGCAATCATTCCAGATCTTCAACTCTCTTCGGGCCCTAGGA
CACTTCTTCAAGCCCTTCATGATAACATACTTTCCATCGTTTGTGGGCCT
AACGTAATTATTGTCGTGGGCAACACACCTGGTCGGGAACCACCATGTCG
AGCGGATGATATTCGAGAATTTGTGGACCGTTCTAATGCTCTTCGTCCTG
ACTTTTGCTTCGCCCCCGGGACAACTATTCCTACAGCATCCTTAGTGGCC
GTGAGCGTGGGAAGCCCTGGATTGAACGCCGCCTTGCCAGAGCCTTCCCA
ATGCCCAGTTCCTTCCTCAAGCGATCTCTATATGTGCCTGGACGCTGACG
AATGCGACCCTCCGGTCTTTAGCCCTCGCGAAGATTTCAGGTGTGTGTCA
ACTTGTGAGCCTGACCCTGTGGCTCCAGTAGCACCGGGACAGCTTTCAGC
AGTTGCAAGCATTGTGAACGGTTCAGTAGTGGAGGGGCTCACTGCTGCTT
CAGTATTCAATTCTGTGCAGCAGATTATCCAGTCAGACGCAATGCGATTT
ATGCTTCCGGTTAGTACACTGCTTCGCGATCTAGATCCTCCACTGCCGCC
GGGTAGGGGCGACGATTGCGGGGACCGAGTAGTGATAAGTTCGCCAGAGC
TTCCGATGAACATTGCTGCCCTTTCTTTCAATACCTTTCCTATGGCGGTT
TCTCTTTCGCACAATGCTTGCGAGAACGGGCCGTTTGTATGCACTTTGAT
CATTCATTTGGTTAGGATAGCTCTTTTCCGTGACGAACAAAGGTTTCTTG
TGAGGGCGTGTCTCTAA
back to top

protein sequence of Gcaud8301.t1

>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MSPLLLLSVLAFLQTQAQLVCNELNIFPHVVCEEFSGSQCASAAQFGCVT
IDNKTCALNPTLASANFCSDNRYPVTSFILSPNSSVEFRLTVNVDQSRVV
LFLIDASPSMREQLPEVVAELSLLAESLISELSASIEISIYAGEESFTSP
ASQMRLQAATNNITAVQEALAIIPDLQLSSGPRTLLQALHDNILSIVCGP
NVIIVVGNTPGREPPCRADDIREFVDRSNALRPDFCFAPGTTIPTASLVA
VSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVS
TCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRF
MLPVSTLLRDLDPPLPPGRGDDCGDRVVISSPELPMNIAALSFNTFPMAV
SLSHNACENGPFVCTLIIHLVRIALFRDEQRFLVRACL*
back to top

mRNA from alignment at NODE_1612_length_9489_cov_4.304852:6387..7703-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:6387..7703- (Gracilaria caudata M_176_S67 male)
ATGTCTCCTTTACTCCTTCTTTCCGTTTTGGCTTTCCTTCAAACACAAGC
TCAGCTAGTGTGCAATGAATTGAATATCTTTCCTCATGTAGTCTGCGAGG
AATTCTCTGGATCTCAATGCGCATCTGCCGCTCAGTTTGGATGTGTTACT
ATCGATAACAAAACATGTGCTCTCAATCCTACACTCGCTTCTGCAAACTT
TTGTTCCGATAACCGATACCCAGTCACTAGTTTCATTCTGTCACCCAACT
CATCGGTCGAGTTCAGGCTCACCGTCAATGTCGATCAATCTCGCGTCGTA
CTCTTTTTGATTGATGCCTCTCCATCAATGCGTGAACAACTTCCCGAAGT
GGTCGCGGAGTTATCACTTCTGGCGGAATCCTTGATTTCAGAACTTTCTG
CATCCATTGAGATCTCTATATACGCTGGAGAAGAATCGTTTACAAGTCCT
GCGTCACAGATGCGGTTGCAAGCCGCTACCAACAACATCACTGCTGTTCA
GGAAGCTCTTGCAATCATTCCAGATCTTCAACTCTCTTCGGGCCCTAGGA
CACTTCTTCAAGCCCTTCATGATAACATACTTTCCATCGTTTGTGGGCCT
AACGTAATTATTGTCGTGGGCAACACACCTGGTCGGGAACCACCATGTCG
AGCGGATGATATTCGAGAATTTGTGGACCGTTCTAATGCTCTTCGTCCTG
ACTTTTGCTTCGCCCCCGGGACAACTATTCCTACAGCATCCTTAGTGGCC
GTGAGCGTGGGAAGCCCTGGATTGAACGCCGCCTTGCCAGAGCCTTCCCA
ATGCCCAGTTCCTTCCTCAAGCGATCTCTATATGTGCCTGGACGCTGACG
AATGCGACCCTCCGGTCTTTAGCCCTCGCGAAGATTTCAGGTGTGTGTCA
ACTTGTGAGCCTGACCCTGTGGCTCCAGTAGCACCGGGACAGCTTTCAGC
AGTTGCAAGCATTGTGAACGGTTCAGTAGTGGAGGGGCTCACTGCTGCTT
CAGTATTCAATTCTGTGCAGCAGATTATCCAGTCAGACGCAATGCGATTT
ATGCTTCCGGTTAGTACACTGCTTCGCGATCTAGATCCTCCACTGCCGCC
GGGTAGGGGCGACGATTGCGGGGACCGAGTAGTGATAAGTTCGCCAGAGC
TTCCGATGAACATTGCTGCCCTTTCTTTCAATACCTTTCCTATGGCGGTT
TCTCTTTCGCACAATGCTTGCGAGAACGGGCCGTTTGTATGCACTTTGAT
CATTCATTTGGTTAGGATAGCTCTTTTCCGTGACGAACAAAGGTTTCTTG
TGAGGGCGTGTCTCTAA
back to top

Coding sequence (CDS) from alignment at NODE_1612_length_9489_cov_4.304852:6387..7703-

>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_1612_length_9489_cov_4.304852:6387..7703- (Gracilaria caudata M_176_S67 male)
ATGTCTCCTTTACTCCTTCTTTCCGTTTTGGCTTTCCTTCAAACACAAGC
TCAGCTAGTGTGCAATGAATTGAATATCTTTCCTCATGTAGTCTGCGAGG
AATTCTCTGGATCTCAATGCGCATCTGCCGCTCAGTTTGGATGTGTTACT
ATCGATAACAAAACATGTGCTCTCAATCCTACACTCGCTTCTGCAAACTT
TTGTTCCGATAACCGATACCCAGTCACTAGTTTCATTCTGTCACCCAACT
CATCGGTCGAGTTCAGGCTCACCGTCAATGTCGATCAATCTCGCGTCGTA
CTCTTTTTGATTGATGCCTCTCCATCAATGCGTGAACAACTTCCCGAAGT
GGTCGCGGAGTTATCACTTCTGGCGGAATCCTTGATTTCAGAACTTTCTG
CATCCATTGAGATCTCTATATACGCTGGAGAAGAATCGTTTACAAGTCCT
GCGTCACAGATGCGGTTGCAAGCCGCTACCAACAACATCACTGCTGTTCA
GGAAGCTCTTGCAATCATTCCAGATCTTCAACTCTCTTCGGGCCCTAGGA
CACTTCTTCAAGCCCTTCATGATAACATACTTTCCATCGTTTGTGGGCCT
AACGTAATTATTGTCGTGGGCAACACACCTGGTCGGGAACCACCATGTCG
AGCGGATGATATTCGAGAATTTGTGGACCGTTCTAATGCTCTTCGTCCTG
ACTTTTGCTTCGCCCCCGGGACAACTATTCCTACAGCATCCTTAGTGGCC
GTGAGCGTGGGAAGCCCTGGATTGAACGCCGCCTTGCCAGAGCCTTCCCA
ATGCCCAGTTCCTTCCTCAAGCGATCTCTATATGTGCCTGGACGCTGACG
AATGCGACCCTCCGGTCTTTAGCCCTCGCGAAGATTTCAGGTGTGTGTCA
ACTTGTGAGCCTGACCCTGTGGCTCCAGTAGCACCGGGACAGCTTTCAGC
AGTTGCAAGCATTGTGAACGGTTCAGTAGTGGAGGGGCTCACTGCTGCTT
CAGTATTCAATTCTGTGCAGCAGATTATCCAGTCAGACGCAATGCGATTT
ATGCTTCCGGTTAGTACACTGCTTCGCGATCTAGATCCTCCACTGCCGCC
GGGTAGGGGCGACGATTGCGGGGACCGAGTAGTGATAAGTTCGCCAGAGC
TTCCGATGAACATTGCTGCCCTTTCTTTCAATACCTTTCCTATGGCGGTT
TCTCTTTCGCACAATGCTTGCGAGAACGGGCCGTTTGTATGCACTTTGAT
CATTCATTTGGTTAGGATAGCTCTTTTCCGTGACGAACAAAGGTTTCTTG
TGAGGGCGTGTCTCTAA
back to top