Gcaud8301.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8301.t1
Unique NameGcaud8301.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length439
Homology
BLAST of Gcaud8301.t1 vs. uniprot
Match: A0A2V3IME3_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME3_9FLOR)

HSP 1 Score: 143 bits (360), Expect = 1.400e-34
Identity = 131/424 (30.90%), Postives = 193/424 (45.52%), Query Frame = 0
Query:   21 CNELNIFPHVVCEE--FS-----GSQCASAAQFGC----VTIDNKTCALNPTLASANFCSDNRYPVTSFILSPNSSVEFRLTVNV-DQSRVVLFLIDASPSMREQLPEVVAELSLLAESLISELSASIEISIYAGEESFTSPASQMRLQAATNNITAVQEALAIIPDLQLSSGPRTLLQALHDNILSIVCGPN------VIIVVGNTPGREPPCRADDIREFVDRSNALRPDFCFAPGTTIPTASLVAVSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVSTCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRFMLPVSTLLRDLDPPLPPGRG----------DDCGDRVVISSPELPMNIAALSFNTFPMAVSLSHNACENGPFVCTL 416
            C   N+FP V CE   FS     GS C+  AQFGC     +  +  CALNP +   N C +   PV S  L+  S V+F L +N+   S  V+ LID S S R  L  +  ELS     L    SA + +++Y  EES+      + L A T+ +    EAL  IP+     G RT + AL   + S V G N      +I+++G+ PGREP CR    R+ V                 +P++++++VS+GS GLN+ALP PS C    +   Y                           DP +P+A GQ   + +  NG VVE +TAAS+  +V  + +     +  P  + +R      P  RG          + CG++V + +  LP  I+A +  T  + V+L    C +GPF C +
Sbjct:   28 CRRKNVFPFVTCESKCFSYYPNFGSGCSQKAQFGCEYKKCSSSSYRCALNPAVEKDNPCPNGEVPVKSINLT--SFVDFNLAINLRGYSTDVVLLIDTSSSTRPHLKAIKNELSSFVRQLNG--SAKVGVAVYGSEESYDESGLSV-LSAVTDYVDPALEALESIPETV--DGTRTTITALK-TLSSSVAGLNLRGNKRIIVLIGDRPGREPDCRNGYNRDMV-----------------LPSSTMISVSLGSDGLNSALPAPSAC---MNGSYY---------------------------DP-SPIAVGQARDIVNRTNGEVVEIVTAASLLWAVDTVRRRPVYWYNRPPGSNIRVSSASFPLYRGPYTPPVQRYSNGCGNKVYLRTSGLPAFISAPAEVTASVHVALPKGVCIHGPFTCEI 395          
BLAST of Gcaud8301.t1 vs. uniprot
Match: A0A2V3IGI2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGI2_9FLOR)

HSP 1 Score: 93.2 bits (230), Expect = 5.540e-17
Identity = 123/445 (27.64%), Postives = 192/445 (43.15%), Query Frame = 0
Query:   21 CNELNIFPHVVCE-----EFSG---SQCASAAQFG-----CVTIDNKTCALNPTLASANFCSDNRYPVTSFILSPNSSVEFRLTVNVDQSRV-VLFLIDASPSMREQL----PEVVAELSLLAESLISELSASIEISIYAGEESFTSPASQMRLQAATNNIT-AVQ-----EALAIIPDLQLSSGPRTLLQALHDNILSIV---CGPNVIIVVGNTPGREPPCRAD--DIREFVDRSNALRPDFCFAPGTTIPTASLVAVSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVSTCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRFMLPVSTLLRDLDPPLPPGR-----GDDCGDRVVISSPE-LPMNIAALSFNTFPMAVSLSHNACENGPFVCTLIIHLVRIALFRDEQ 430
            C +   FPH+         F+G   S C  A+Q+G     C   ++  C+L   +A+ N C +   PV++  ++ N      L +NV +  + V+ L+DA  S RE++    P++V+ +  L      +++ +I IS+   EESF    + + LQ  TNN   AVQ     E L  IPD     GPR  L+ L  +I + V       ++++VG+T GREP C  D  D   F  R         F+ G      S+VAVS+G PGLNA LP  + C                     F+P              V  V   Q S +A++  G+ VEG  A ++  +V  + ++    F  P      D+  P P           C  RV  +S       +A     T  +++SL+++ C +GPF C      V ++ FR+ Q
Sbjct:   23 CRQDFFFPHITSPFGCTGNFTGFQVSDCLVASQWGYEFSPCGE-ESFACSLKREIAANNSCPNAELPVSTVRVNLNRPTFVSLGINVPRPTLDVILLLDAVSSTRERIIALKPQIVSFIRQL-----EDVAENIHISVSGTEESFDQRGTSV-LQRTTNNFAEAVQSLDEFERLPPIPD-----GPRASLRFLLPSITNTVGFRSEQQIVVLVGDTSGREPTCVFDRFDRTSFPSR---------FSGGQF----SVVAVSIGDPGLNAPLPTQAPCTR-------------------FTPF-------------VEAVTANQASTIANLTQGAFVEGFDADTLLQTVMNVSRNAPGNFGQPTGF---DISVPQPFSNFRRPFPSVCDGRVQFNSTMGNRFFLAGPLETTVQLSISLANSGCMDGPFQCP-----VTVSAFRNNQ 402          
BLAST of Gcaud8301.t1 vs. uniprot
Match: A0A2V3IEV7_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEV7_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 6.250e-10
Identity = 85/350 (24.29%), Postives = 145/350 (41.43%), Query Frame = 0
Query:   75 VTSFILSPNSSVEFRLTVNVD-QSRVVLFLIDASPSMREQLPEVVAELSLLAESLISELSASIEISIYAGEESFTSPASQMRLQAATNNITAVQEALAIIPDLQLSSGPRTLLQALHDNI--------LSIVCGPNVIIVVGNTPGREPPCRADDIREFVDRSNALRPD-FCFAPGTTIPTASLVAVSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVSTCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRFMLPVSTLLRDLDPPLPPGRGDDCGDRVVISSPELPMNIAALSFNTFPMAVSLSHNACENGPFVC 414
            V +  L  +  ++  L +NV   ++ ++ L+DAS S R +L  V  +L     +L      ++ ++ Y GE         + L+A T+++    EAL  IP +  + GPRT + A+   +        L +     +I++VG+TPGREP CR           + ++ D   F+   T     ++ V++ SPGLNAALP P+ C   +S+ +                 +  R   T E + ++ V   +L      +  +   GL       SV     +    +  P S   R +           C DRV+I    +P         T  +++SL    C+ GPF C
Sbjct:    2 VNNVTLRHHFPIDISLDINVPGDTQDIVMLVDASQSTRAKLNNVKEQLKSFVRTLGDV--GNVSVAFYGGESDMGETGYSVALKA-TSDVNRAAEALDNIPIV--ADGPRTSITAMWSIMQHQDGTIPLGLFANRRIIVLVGDTPGREPECR-----------HGIKSDRMSFSSQRT----RVMVVNLASPGLNAALPAPAACGYITSAAI--------------PEGQGTRLADTSEGELISQVTSSKLRESILKLRMNAANGLHGKGSHISVLSKTYTYT-EYTCPSSFCARTITT-------KGCDDRVIIRKSNIPDFAHGPVQMTGKISLSLPAGICQRGPFYC 309          
The following BLAST results are available for this feature:
BLAST of Gcaud8301.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IME3_9FLOR1.400e-3430.90VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IGI2_9FLOR5.540e-1727.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IEV7_9FLOR6.250e-1024.29VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..438
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1612_length_9489_cov_4.304852contigNODE_1612_length_9489_cov_4.304852:6387..7703 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8301.t1Gcaud8301.t1Gracilaria caudata M_176_S67 malemRNANODE_1612_length_9489_cov_4.304852 6387..7703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8301.t1 ID=Gcaud8301.t1|Name=Gcaud8301.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MSPLLLLSVLAFLQTQAQLVCNELNIFPHVVCEEFSGSQCASAAQFGCVT
IDNKTCALNPTLASANFCSDNRYPVTSFILSPNSSVEFRLTVNVDQSRVV
LFLIDASPSMREQLPEVVAELSLLAESLISELSASIEISIYAGEESFTSP
ASQMRLQAATNNITAVQEALAIIPDLQLSSGPRTLLQALHDNILSIVCGP
NVIIVVGNTPGREPPCRADDIREFVDRSNALRPDFCFAPGTTIPTASLVA
VSVGSPGLNAALPEPSQCPVPSSSDLYMCLDADECDPPVFSPREDFRCVS
TCEPDPVAPVAPGQLSAVASIVNGSVVEGLTAASVFNSVQQIIQSDAMRF
MLPVSTLLRDLDPPLPPGRGDDCGDRVVISSPELPMNIAALSFNTFPMAV
SLSHNACENGPFVCTLIIHLVRIALFRDEQRFLVRACL*
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