Gcaud8292.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8292.t1
Unique Name	Gcaud8292.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1668_length_9166_cov_4.693333	contig	NODE_1668_length_9166_cov_4.693333:5154..6506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	32264.tetur16g00110.1
PFAMs	DUF3504
Max annot lvl	33208\|Metazoa
Evalue	0.000267
EggNOG OGs	2CY9D@1\|root,2S2XV@2759\|Eukaryota,3A4FC@33154\|Opisthokonta,3BRU0@33208\|Metazoa,3D9Y7@33213\|Bilateria
Description	Domain of unknown function (DUF3504)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8292	Gcaud8292	Gracilaria caudata M_176_S67 male	gene	NODE_1668_length_9166_cov_4.693333 5154..6506 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8292.t1.start1	Gcaud8292.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1668_length_9166_cov_4.693333 5154..5156 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8292.t1.CDS1	Gcaud8292.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1668_length_9166_cov_4.693333 5154..6506 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8292.t1.exon1	Gcaud8292.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1668_length_9166_cov_4.693333 5154..6506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8292.t1.stop1	Gcaud8292.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1668_length_9166_cov_4.693333 6504..6506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8292.t1	Gcaud8292.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1668_length_9166_cov_4.693333 5154..6506 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+
coding sequence from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+

mRNA sequence

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=451bp
LAVLDDPKAPHWKRKNVTDRALPLTRFHLFTDERNVPVSHGFSSWEEWQL
KKVNNALIEFIAHYRIRVTNEELFPGTLKAYVAGIQRGFSSEWGFKFDFF
SGPIFSDERTGLKSALSNKIQERQEAGAVRRSHNNLSADDLKKLYASEML
SKSTPRGFITRIIFDLMLLTAFRKGEMWGLRMKNVSLVHRNGKQTFRVVG
RVGSRDGCSKTERGGLAMVNAKPKEIFIFDTDAYDGTLNAFQDIREYLDI
VKTYRLADDNFLAAVNYRAARRTSFFKKGYLGVNTIVTYLKDAFKVLGIR
GEGDLDHATVHSLRATVCSRLYAAGFDDASVALRTGHRDFRSLKSYHNLR
GEVGEQQQSAIFRETASARPESTRSSLQRTANLTGSSGEGGALVQVEEPS
SAVAVPQKRQRLGNSFAAIQSISGQVTVHVNNYYGELGSSGNEEVDDRAD
*

spliced messenger RNA

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGGTGTTGGACGATCCGAAAGCGCCGCACTGGAAGCGGAAGAACGT
CACAGATCGAGCTCTTCCGCTAACTCGTTTCCACCTATTCACAGATGAGC
GGAATGTTCCTGTTTCTCACGGATTCTCATCTTGGGAGGAATGGCAACTG
AAAAAGGTCAACAACGCTCTCATTGAATTTATTGCACATTATAGGATTCG
AGTCACAAATGAAGAACTTTTCCCTGGAACATTGAAAGCATACGTTGCCG
GAATCCAACGAGGATTCTCGTCAGAGTGGGGTTTCAAATTTGATTTCTTC
AGTGGCCCAATCTTTTCTGACGAGAGGACAGGTTTGAAATCAGCGTTGAG
CAACAAAATACAGGAACGTCAAGAAGCAGGTGCGGTTCGCAGAAGCCATA
ATAATTTAAGCGCGGATGACCTTAAGAAGTTGTACGCGTCAGAAATGCTT
TCTAAAAGTACCCCTCGGGGTTTCATCACAAGAATCATTTTCGACCTCAT
GCTTTTGACGGCCTTTCGTAAAGGCGAGATGTGGGGCCTGAGAATGAAAA
ATGTGTCTCTGGTACATCGGAACGGGAAGCAGACATTTAGAGTTGTCGGC
CGCGTAGGATCTCGCGATGGATGTTCGAAAACTGAACGTGGTGGCTTGGC
TATGGTTAATGCAAAGCCAAAGGAGATTTTTATCTTTGATACTGATGCGT
ACGACGGTACACTTAATGCATTTCAGGATATAAGAGAATATCTTGATATT
GTGAAGACTTACCGCCTGGCTGACGACAACTTTCTTGCGGCTGTCAACTA
CAGGGCTGCACGTCGTACTTCATTCTTCAAGAAGGGATATTTGGGGGTAA
ACACTATCGTTACGTATCTAAAAGATGCCTTTAAGGTGCTGGGTATTCGA
GGTGAAGGGGACTTGGATCATGCAACTGTGCACAGTCTTCGCGCTACAGT
TTGCAGTCGGCTGTACGCTGCTGGATTTGATGATGCAAGTGTTGCTCTAC
GGACTGGCCATCGAGATTTTCGTTCGTTGAAATCTTATCATAACTTAAGA
GGAGAAGTTGGAGAGCAACAGCAGTCGGCAATATTTCGGGAGACCGCTAG
TGCTCGTCCGGAGAGTACCAGGTCCTCACTGCAAAGAACTGCAAATCTAA
CAGGTTCTAGTGGAGAAGGAGGCGCGTTGGTTCAAGTCGAAGAACCCAGT
AGTGCGGTGGCTGTACCGCAAAAGCGCCAGCGACTGGGAAACTCTTTTGC
CGCGATTCAGAGCATATCTGGACAGGTTACTGTACATGTGAATAACTACT
ACGGAGAGTTGGGATCAAGTGGTAACGAAGAAGTGGACGACAGAGCCGAT
TGA

protein sequence of Gcaud8292.t1

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
LAVLDDPKAPHWKRKNVTDRALPLTRFHLFTDERNVPVSHGFSSWEEWQL
KKVNNALIEFIAHYRIRVTNEELFPGTLKAYVAGIQRGFSSEWGFKFDFF
SGPIFSDERTGLKSALSNKIQERQEAGAVRRSHNNLSADDLKKLYASEML
SKSTPRGFITRIIFDLMLLTAFRKGEMWGLRMKNVSLVHRNGKQTFRVVG
RVGSRDGCSKTERGGLAMVNAKPKEIFIFDTDAYDGTLNAFQDIREYLDI
VKTYRLADDNFLAAVNYRAARRTSFFKKGYLGVNTIVTYLKDAFKVLGIR
GEGDLDHATVHSLRATVCSRLYAAGFDDASVALRTGHRDFRSLKSYHNLR
GEVGEQQQSAIFRETASARPESTRSSLQRTANLTGSSGEGGALVQVEEPS
SAVAVPQKRQRLGNSFAAIQSISGQVTVHVNNYYGELGSSGNEEVDDRAD
*

mRNA from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+ (Gracilaria caudata M_176_S67 male)
CTGGCGGTGTTGGACGATCCGAAAGCGCCGCACTGGAAGCGGAAGAACGT
CACAGATCGAGCTCTTCCGCTAACTCGTTTCCACCTATTCACAGATGAGC
GGAATGTTCCTGTTTCTCACGGATTCTCATCTTGGGAGGAATGGCAACTG
AAAAAGGTCAACAACGCTCTCATTGAATTTATTGCACATTATAGGATTCG
AGTCACAAATGAAGAACTTTTCCCTGGAACATTGAAAGCATACGTTGCCG
GAATCCAACGAGGATTCTCGTCAGAGTGGGGTTTCAAATTTGATTTCTTC
AGTGGCCCAATCTTTTCTGACGAGAGGACAGGTTTGAAATCAGCGTTGAG
CAACAAAATACAGGAACGTCAAGAAGCAGGTGCGGTTCGCAGAAGCCATA
ATAATTTAAGCGCGGATGACCTTAAGAAGTTGTACGCGTCAGAAATGCTT
TCTAAAAGTACCCCTCGGGGTTTCATCACAAGAATCATTTTCGACCTCAT
GCTTTTGACGGCCTTTCGTAAAGGCGAGATGTGGGGCCTGAGAATGAAAA
ATGTGTCTCTGGTACATCGGAACGGGAAGCAGACATTTAGAGTTGTCGGC
CGCGTAGGATCTCGCGATGGATGTTCGAAAACTGAACGTGGTGGCTTGGC
TATGGTTAATGCAAAGCCAAAGGAGATTTTTATCTTTGATACTGATGCGT
ACGACGGTACACTTAATGCATTTCAGGATATAAGAGAATATCTTGATATT
GTGAAGACTTACCGCCTGGCTGACGACAACTTTCTTGCGGCTGTCAACTA
CAGGGCTGCACGTCGTACTTCATTCTTCAAGAAGGGATATTTGGGGGTAA
ACACTATCGTTACGTATCTAAAAGATGCCTTTAAGGTGCTGGGTATTCGA
GGTGAAGGGGACTTGGATCATGCAACTGTGCACAGTCTTCGCGCTACAGT
TTGCAGTCGGCTGTACGCTGCTGGATTTGATGATGCAAGTGTTGCTCTAC
GGACTGGCCATCGAGATTTTCGTTCGTTGAAATCTTATCATAACTTAAGA
GGAGAAGTTGGAGAGCAACAGCAGTCGGCAATATTTCGGGAGACCGCTAG
TGCTCGTCCGGAGAGTACCAGGTCCTCACTGCAAAGAACTGCAAATCTAA
CAGGTTCTAGTGGAGAAGGAGGCGCGTTGGTTCAAGTCGAAGAACCCAGT
AGTGCGGTGGCTGTACCGCAAAAGCGCCAGCGACTGGGAAACTCTTTTGC
CGCGATTCAGAGCATATCTGGACAGGTTACTGTACATGTGAATAACTACT
ACGGAGAGTTGGGATCAAGTGGTAACGAAGAAGTGGACGACAGAGCCGAT
TGA

Coding sequence (CDS) from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1353bp|location=Sequence derived from alignment at NODE_1668_length_9166_cov_4.693333:5154..6506+ (Gracilaria caudata M_176_S67 male)
CTGGCGGTGTTGGACGATCCGAAAGCGCCGCACTGGAAGCGGAAGAACGT
CACAGATCGAGCTCTTCCGCTAACTCGTTTCCACCTATTCACAGATGAGC
GGAATGTTCCTGTTTCTCACGGATTCTCATCTTGGGAGGAATGGCAACTG
AAAAAGGTCAACAACGCTCTCATTGAATTTATTGCACATTATAGGATTCG
AGTCACAAATGAAGAACTTTTCCCTGGAACATTGAAAGCATACGTTGCCG
GAATCCAACGAGGATTCTCGTCAGAGTGGGGTTTCAAATTTGATTTCTTC
AGTGGCCCAATCTTTTCTGACGAGAGGACAGGTTTGAAATCAGCGTTGAG
CAACAAAATACAGGAACGTCAAGAAGCAGGTGCGGTTCGCAGAAGCCATA
ATAATTTAAGCGCGGATGACCTTAAGAAGTTGTACGCGTCAGAAATGCTT
TCTAAAAGTACCCCTCGGGGTTTCATCACAAGAATCATTTTCGACCTCAT
GCTTTTGACGGCCTTTCGTAAAGGCGAGATGTGGGGCCTGAGAATGAAAA
ATGTGTCTCTGGTACATCGGAACGGGAAGCAGACATTTAGAGTTGTCGGC
CGCGTAGGATCTCGCGATGGATGTTCGAAAACTGAACGTGGTGGCTTGGC
TATGGTTAATGCAAAGCCAAAGGAGATTTTTATCTTTGATACTGATGCGT
ACGACGGTACACTTAATGCATTTCAGGATATAAGAGAATATCTTGATATT
GTGAAGACTTACCGCCTGGCTGACGACAACTTTCTTGCGGCTGTCAACTA
CAGGGCTGCACGTCGTACTTCATTCTTCAAGAAGGGATATTTGGGGGTAA
ACACTATCGTTACGTATCTAAAAGATGCCTTTAAGGTGCTGGGTATTCGA
GGTGAAGGGGACTTGGATCATGCAACTGTGCACAGTCTTCGCGCTACAGT
TTGCAGTCGGCTGTACGCTGCTGGATTTGATGATGCAAGTGTTGCTCTAC
GGACTGGCCATCGAGATTTTCGTTCGTTGAAATCTTATCATAACTTAAGA
GGAGAAGTTGGAGAGCAACAGCAGTCGGCAATATTTCGGGAGACCGCTAG
TGCTCGTCCGGAGAGTACCAGGTCCTCACTGCAAAGAACTGCAAATCTAA
CAGGTTCTAGTGGAGAAGGAGGCGCGTTGGTTCAAGTCGAAGAACCCAGT
AGTGCGGTGGCTGTACCGCAAAAGCGCCAGCGACTGGGAAACTCTTTTGC
CGCGATTCAGAGCATATCTGGACAGGTTACTGTACATGTGAATAACTACT
ACGGAGAGTTGGGATCAAGTGGTAACGAAGAAGTGGACGACAGAGCCGAT
TGA