Gcaud8292.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8292.t1
Unique NameGcaud8292.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length451
Homology
BLAST of Gcaud8292.t1 vs. uniprot
Match: A0A2V3IZA2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZA2_9FLOR)

HSP 1 Score: 345 bits (885), Expect = 1.170e-109
Identity = 178/362 (49.17%), Postives = 243/362 (67.13%), Query Frame = 0
Query:    5 DDPKAPHWKRKNVTDRALP-----LTRFHLFTDERNVPVSHGFSSWEEWQLKKVNNALIEFIAHYRIRVTNEELFPGTLKAYVAGIQRGFSSEWGFKFDFFSGPIFSDERTGLKSALSNKIQERQEAGAVRRSHNNLSADDLKKLYASEMLSKSTPRGFITRIIFDLMLLTAFRKGEMWGLRMKNVSLVHRNGKQTFRVVGRVGSRDGCSKTERGGLAMVNAKPKEIFIFDTDAYDGTLNAFQDIREYLDIVKTYRLADDNFLAAVNYRAARRTSFFKKGYLGVNTIVTYLKDAFKVLGIRGEGDLDHATVHSLRATVCSRLYAAGFDDASVALRTGHRDFRSLKSYHNLRGEVGEQQQSAI 361
            +DP +P  K+++V  +        LTR HLF D  N+ V+     W  +QL+ +N ALIE+IAH R   T +EL   TLK YVAGIQR F SEWGF+F FFSGP+FSD+  G+ +AL NK++ERQ AG++ RS N LS +D+KKLY+S +LSK TPRGFITRIIF L L+T+ RK E+W LRMK+V+L    G++ +++VG  G+  G S+T+  G A+VN+KPKE++I +T+   G +N F+D+ EY+ IV T R  +D+FLA+VNY A  R  FF++G LG+++I  Y+K+A +VLGI GEG  DH TV  LR TV S L  +   + S       R+ R+LK  HN RG +G QQQ  I
Sbjct:  161 EDPSSPKRKKQSVQAQXXXXXXXRLTRMHLFRDTNNLSVADNHRDWSMFQLQNINAALIEYIAHVRNARTGKELAANTLKVYVAGIQRVFESEWGFQFKFFSGPVFSDKNKGIVTALGNKVRERQAAGSIIRSRNTLSKEDIKKLYSSAVLSKQTPRGFITRIIFGLALMTSLRKRELWALRMKDVTLCVEQGEKVWKIVGCNGTSGGASETQARGWALVNSKPKEVYIRNTEHLGGLVNIFKDVEEYMQIVTTMRGPEDHFLASVNYTAIDRRKFFRRGNLGIHSIANYVKEACEVLGIVGEGVNDHVTVDGLRETVISNLADSDHGELS-------RESRTLKDKHNHRGNLGRQQQMTI 515          
The following BLAST results are available for this feature:
BLAST of Gcaud8292.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZA2_9FLOR1.170e-10949.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 133..353
e-value: 1.3E-16
score: 62.8
IPR002104Integrase, catalytic domainPFAMPF00589Phage_integrasecoord: 283..348
e-value: 1.1E-6
score: 28.5
IPR002104Integrase, catalytic domainPROSITEPS51898TYR_RECOMBINASEcoord: 131..363
score: 17.124081
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 365..389
NoneNo IPR availableCDDcd00397DNA_BRE_Ccoord: 140..346
e-value: 1.61872E-13
score: 66.3495
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 135..352

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1668_length_9166_cov_4.693333contigNODE_1668_length_9166_cov_4.693333:5154..6506 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8292.t1Gcaud8292.t1Gracilaria caudata M_176_S67 malemRNANODE_1668_length_9166_cov_4.693333 5154..6506 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8292.t1 ID=Gcaud8292.t1|Name=Gcaud8292.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
LAVLDDPKAPHWKRKNVTDRALPLTRFHLFTDERNVPVSHGFSSWEEWQL
KKVNNALIEFIAHYRIRVTNEELFPGTLKAYVAGIQRGFSSEWGFKFDFF
SGPIFSDERTGLKSALSNKIQERQEAGAVRRSHNNLSADDLKKLYASEML
SKSTPRGFITRIIFDLMLLTAFRKGEMWGLRMKNVSLVHRNGKQTFRVVG
RVGSRDGCSKTERGGLAMVNAKPKEIFIFDTDAYDGTLNAFQDIREYLDI
VKTYRLADDNFLAAVNYRAARRTSFFKKGYLGVNTIVTYLKDAFKVLGIR
GEGDLDHATVHSLRATVCSRLYAAGFDDASVALRTGHRDFRSLKSYHNLR
GEVGEQQQSAIFRETASARPESTRSSLQRTANLTGSSGEGGALVQVEEPS
SAVAVPQKRQRLGNSFAAIQSISGQVTVHVNNYYGELGSSGNEEVDDRAD
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR002104Integrase_catalytic
IPR011010DNA_brk_join_enz