Gcaud8262.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8262.t1
Unique Name	Gcaud8262.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_926_length_16078_cov_4.480515	contig	NODE_926_length_16078_cov_4.480515:8383..9621 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD12826
Max annot lvl	2903.EOD12826\|-
Evalue	1.08e-19
EggNOG OGs	2F143@1\|root,2T264@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8262	Gcaud8262	Gracilaria caudata M_176_S67 male	gene	NODE_926_length_16078_cov_4.480515 8383..9621 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8262.t1.start1	Gcaud8262.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_926_length_16078_cov_4.480515 8383..8385 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8262.t1.CDS1	Gcaud8262.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_926_length_16078_cov_4.480515 8383..9621 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8262.t1.exon1	Gcaud8262.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_926_length_16078_cov_4.480515 8383..9621 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8262.t1.stop1	Gcaud8262.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_926_length_16078_cov_4.480515 9619..9621 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8262.t1	Gcaud8262.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_926_length_16078_cov_4.480515 8383..9621 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+
coding sequence from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+

mRNA sequence

>Gcaud8262.t1 ID=Gcaud8262.t1|Name=Gcaud8262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MAPPSNPASQLSAPPTNGCLPKQDGVQFCVMIQCGRLAANAVSGNKYLAM
TPSSIDHAYATQRGQVVLLHLSAIMYSYWDAAPAGPSVFELASNHLPSDL
RQIFREQCASWGTHRLNAPFDEQMYVVEDGEHGSIVADYNMTKFYRVLGM
KISPAAALRRRGMELPVASCFTALPFRGHLVYDGLIFGGPNAILSKAKKR
TLIERCRAAKSAGTIISGFEVQPSPQRIPVSEACIQSMNRSQLREFVRQR
GGSVSDIAEKSDLVSQALSLSNKPAQSEGKHAGANKPERTREQQAQVDRL
KKLDKVTGLTLFRRLGYTEATNRGHVVTVLNGTSLSGSFHSKDLVPTATE
IMDELLKRAESKGSVSKTIAIDDKQTAEAVNLVTKPAGIHTGFYPPPSVE
EQTFSIMMSGAV*

spliced messenger RNA

>Gcaud8262.t1 ID=Gcaud8262.t1|Name=Gcaud8262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCTCCATCGAACCCAGCGTCTCAGCTTTCTGCCCCGCCGACCAA
CGGCTGCCTCCCCAAGCAAGACGGCGTACAGTTTTGCGTGATGATCCAAT
GTGGACGTCTTGCCGCCAACGCCGTATCCGGCAACAAATACCTAGCCATG
ACCCCCTCCTCCATTGACCATGCATACGCAACTCAGCGTGGCCAGGTCGT
CCTGCTTCATCTCTCCGCCATCATGTACAGCTACTGGGATGCCGCTCCGG
CCGGTCCGTCCGTCTTCGAGCTCGCCTCGAATCATCTGCCATCGGATCTG
CGTCAAATCTTTCGCGAGCAGTGTGCCTCATGGGGTACTCACCGTCTAAA
CGCGCCATTTGATGAGCAGATGTACGTCGTCGAGGATGGTGAACATGGGT
CCATTGTTGCGGATTACAACATGACCAAGTTCTACCGCGTGCTTGGCATG
AAGATATCACCGGCAGCAGCGCTGCGTCGAAGGGGCATGGAACTTCCGGT
CGCTTCATGCTTCACCGCCTTGCCGTTTCGTGGCCACCTCGTGTACGATG
GTCTCATTTTCGGGGGCCCGAATGCGATCCTCAGTAAGGCGAAGAAAAGA
ACGCTAATCGAACGTTGCCGCGCGGCCAAGTCTGCAGGCACAATCATTTC
TGGCTTTGAAGTGCAGCCTTCTCCTCAGAGAATCCCCGTCTCGGAGGCAT
GTATTCAAAGCATGAATCGAAGTCAGCTAAGGGAGTTTGTGCGCCAAAGA
GGTGGCTCTGTGTCTGATATTGCTGAGAAGTCGGATTTGGTTTCACAAGC
ACTATCGCTATCCAATAAGCCTGCACAGTCCGAAGGCAAACATGCCGGTG
CCAACAAGCCCGAGCGTACCAGAGAACAACAGGCCCAGGTCGATCGCCTG
AAAAAACTTGACAAGGTGACGGGTTTGACTTTGTTTAGACGGCTAGGGTA
TACCGAAGCAACCAATCGTGGACATGTGGTGACCGTTCTAAATGGCACTT
CTCTTTCAGGCTCGTTTCATTCAAAGGATTTAGTTCCCACTGCAACGGAA
ATAATGGACGAATTGCTGAAGAGGGCGGAATCAAAAGGCAGCGTTTCCAA
AACCATTGCGATTGACGATAAACAGACTGCTGAAGCTGTCAACTTAGTGA
CGAAACCGGCTGGAATCCATACGGGCTTCTATCCGCCTCCTAGCGTAGAG
GAGCAAACATTTAGCATAATGATGTCGGGCGCGGTGTAA

protein sequence of Gcaud8262.t1

>Gcaud8262.t1 ID=Gcaud8262.t1|Name=Gcaud8262.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MAPPSNPASQLSAPPTNGCLPKQDGVQFCVMIQCGRLAANAVSGNKYLAM
TPSSIDHAYATQRGQVVLLHLSAIMYSYWDAAPAGPSVFELASNHLPSDL
RQIFREQCASWGTHRLNAPFDEQMYVVEDGEHGSIVADYNMTKFYRVLGM
KISPAAALRRRGMELPVASCFTALPFRGHLVYDGLIFGGPNAILSKAKKR
TLIERCRAAKSAGTIISGFEVQPSPQRIPVSEACIQSMNRSQLREFVRQR
GGSVSDIAEKSDLVSQALSLSNKPAQSEGKHAGANKPERTREQQAQVDRL
KKLDKVTGLTLFRRLGYTEATNRGHVVTVLNGTSLSGSFHSKDLVPTATE
IMDELLKRAESKGSVSKTIAIDDKQTAEAVNLVTKPAGIHTGFYPPPSVE
EQTFSIMMSGAV*

mRNA from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8262.t1 ID=Gcaud8262.t1|Name=Gcaud8262.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+ (Gracilaria caudata M_176_S67 male)
ATGGCCCCTCCATCGAACCCAGCGTCTCAGCTTTCTGCCCCGCCGACCAA
CGGCTGCCTCCCCAAGCAAGACGGCGTACAGTTTTGCGTGATGATCCAAT
GTGGACGTCTTGCCGCCAACGCCGTATCCGGCAACAAATACCTAGCCATG
ACCCCCTCCTCCATTGACCATGCATACGCAACTCAGCGTGGCCAGGTCGT
CCTGCTTCATCTCTCCGCCATCATGTACAGCTACTGGGATGCCGCTCCGG
CCGGTCCGTCCGTCTTCGAGCTCGCCTCGAATCATCTGCCATCGGATCTG
CGTCAAATCTTTCGCGAGCAGTGTGCCTCATGGGGTACTCACCGTCTAAA
CGCGCCATTTGATGAGCAGATGTACGTCGTCGAGGATGGTGAACATGGGT
CCATTGTTGCGGATTACAACATGACCAAGTTCTACCGCGTGCTTGGCATG
AAGATATCACCGGCAGCAGCGCTGCGTCGAAGGGGCATGGAACTTCCGGT
CGCTTCATGCTTCACCGCCTTGCCGTTTCGTGGCCACCTCGTGTACGATG
GTCTCATTTTCGGGGGCCCGAATGCGATCCTCAGTAAGGCGAAGAAAAGA
ACGCTAATCGAACGTTGCCGCGCGGCCAAGTCTGCAGGCACAATCATTTC
TGGCTTTGAAGTGCAGCCTTCTCCTCAGAGAATCCCCGTCTCGGAGGCAT
GTATTCAAAGCATGAATCGAAGTCAGCTAAGGGAGTTTGTGCGCCAAAGA
GGTGGCTCTGTGTCTGATATTGCTGAGAAGTCGGATTTGGTTTCACAAGC
ACTATCGCTATCCAATAAGCCTGCACAGTCCGAAGGCAAACATGCCGGTG
CCAACAAGCCCGAGCGTACCAGAGAACAACAGGCCCAGGTCGATCGCCTG
AAAAAACTTGACAAGGTGACGGGTTTGACTTTGTTTAGACGGCTAGGGTA
TACCGAAGCAACCAATCGTGGACATGTGGTGACCGTTCTAAATGGCACTT
CTCTTTCAGGCTCGTTTCATTCAAAGGATTTAGTTCCCACTGCAACGGAA
ATAATGGACGAATTGCTGAAGAGGGCGGAATCAAAAGGCAGCGTTTCCAA
AACCATTGCGATTGACGATAAACAGACTGCTGAAGCTGTCAACTTAGTGA
CGAAACCGGCTGGAATCCATACGGGCTTCTATCCGCCTCCTAGCGTAGAG
GAGCAAACATTTAGCATAATGATGTCGGGCGCGGTGTAA

Coding sequence (CDS) from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+

>Gcaud8262.t1 ID=Gcaud8262.t1|Name=Gcaud8262.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_926_length_16078_cov_4.480515:8383..9621+ (Gracilaria caudata M_176_S67 male)
ATGGCCCCTCCATCGAACCCAGCGTCTCAGCTTTCTGCCCCGCCGACCAA
CGGCTGCCTCCCCAAGCAAGACGGCGTACAGTTTTGCGTGATGATCCAAT
GTGGACGTCTTGCCGCCAACGCCGTATCCGGCAACAAATACCTAGCCATG
ACCCCCTCCTCCATTGACCATGCATACGCAACTCAGCGTGGCCAGGTCGT
CCTGCTTCATCTCTCCGCCATCATGTACAGCTACTGGGATGCCGCTCCGG
CCGGTCCGTCCGTCTTCGAGCTCGCCTCGAATCATCTGCCATCGGATCTG
CGTCAAATCTTTCGCGAGCAGTGTGCCTCATGGGGTACTCACCGTCTAAA
CGCGCCATTTGATGAGCAGATGTACGTCGTCGAGGATGGTGAACATGGGT
CCATTGTTGCGGATTACAACATGACCAAGTTCTACCGCGTGCTTGGCATG
AAGATATCACCGGCAGCAGCGCTGCGTCGAAGGGGCATGGAACTTCCGGT
CGCTTCATGCTTCACCGCCTTGCCGTTTCGTGGCCACCTCGTGTACGATG
GTCTCATTTTCGGGGGCCCGAATGCGATCCTCAGTAAGGCGAAGAAAAGA
ACGCTAATCGAACGTTGCCGCGCGGCCAAGTCTGCAGGCACAATCATTTC
TGGCTTTGAAGTGCAGCCTTCTCCTCAGAGAATCCCCGTCTCGGAGGCAT
GTATTCAAAGCATGAATCGAAGTCAGCTAAGGGAGTTTGTGCGCCAAAGA
GGTGGCTCTGTGTCTGATATTGCTGAGAAGTCGGATTTGGTTTCACAAGC
ACTATCGCTATCCAATAAGCCTGCACAGTCCGAAGGCAAACATGCCGGTG
CCAACAAGCCCGAGCGTACCAGAGAACAACAGGCCCAGGTCGATCGCCTG
AAAAAACTTGACAAGGTGACGGGTTTGACTTTGTTTAGACGGCTAGGGTA
TACCGAAGCAACCAATCGTGGACATGTGGTGACCGTTCTAAATGGCACTT
CTCTTTCAGGCTCGTTTCATTCAAAGGATTTAGTTCCCACTGCAACGGAA
ATAATGGACGAATTGCTGAAGAGGGCGGAATCAAAAGGCAGCGTTTCCAA
AACCATTGCGATTGACGATAAACAGACTGCTGAAGCTGTCAACTTAGTGA
CGAAACCGGCTGGAATCCATACGGGCTTCTATCCGCCTCCTAGCGTAGAG
GAGCAAACATTTAGCATAATGATGTCGGGCGCGGTGTAA