|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8258.t1.start1 | Gcaud8258.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1520_length_9983_cov_4.292357 4315..4317 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud8258.t1.stop1 | Gcaud8258.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1520_length_9983_cov_4.292357 6937..6939 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8258.t1 ID=Gcaud8258.t1|Name=Gcaud8258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=875bp MQPLTSESEVDPTPPAALLPPLYLNSARIRRIYESLRDDTIPLTPPSSTA TTPTPSPPPSPVHEPQLDPPDVPNTCDIEVAPPSDEQLGLPSAVNAALDD VPDAIKPLVLALWKAPDVAVLHGYSRSQAATALAHALNLHRAAGAARAVL VVPRIASAAKVWQQQLSASLDEVKVTTLRSVRAPRTTCLNSLRMEQYPGV VILADKSLKDPSCWNEVRQALRENRVVNAWDIVISEIRGGDSTLNLYHSP FRLVSDKQARSGMFVMCSDDVARVHKEQFSKHAVRDFVRTQLPSLSSLSE ESIWITPASIGNSASAAKKPTTPKPKSKWKQNQKARSQQLEDLRRKADAF VSELKNTPPTYRQIPSRLSDGELVRSPEVDHTPQLMTRTKRVPRSLSVPM NTSRTQKRAAAGRVPLQENRKPTIVKGEPQRRDGFQEIRRASPSQDVSTM RSNVSRTRRRSSLQDVQSRRPYDRRSISIVDLSDDDESDVEWHTPPSQVV APPFFSDDYNRSDDSSDEYEWKTAIASRRRSRRSVSRSAASRTKSRIARL SSERMQRSGEHRDAEFTPPSRLLRRSPCVLDEGLESPDTVPSTKVHDSEF SALGASAGSGRTGSGSRKVVRRRRASNERPLGRRRGPRRSVSAENLVDME ETSTPASSPIGTTRRHSSSRSYFASSRRDDVFGTSVRRNMPFVEIPDSDI EVIDVDPEVIDLCSDDDDSGHDGISPARGVDSERRRRVSLERTNMRTASF ESNDEGELSYGSSLILTGVTKYNPQPDSLPKPERQKYNRWLGMARKAEAR GPEGYEAAIKLYTKCLNVCDGDDHLTNRILSLTSETGLLSNKDFCEGRIT SVISKRARPLRRRLRRICSSDSSS* back to topspliced messenger RNA >Gcaud8258.t1 ID=Gcaud8258.t1|Name=Gcaud8258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2625bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:4315..6939+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGCCGCTTACTTCCGAAAGCGAGGTCGATCCCACTCCCCCCGCCGC TTTACTCCCGCCTCTCTATCTCAACTCAGCCCGAATCCGGAGGATTTATG AATCGCTCCGAGATGACACCATCCCCTTAACCCCGCCTTCGTCCACGGCC ACTACCCCCACCCCTTCCCCACCGCCATCGCCCGTTCACGAACCGCAGCT CGACCCGCCCGATGTGCCCAACACCTGCGATATTGAAGTTGCGCCGCCCT CGGACGAGCAGCTCGGACTGCCGTCAGCAGTTAATGCGGCTCTCGACGAT GTACCCGACGCGATTAAACCTCTCGTGCTGGCGCTTTGGAAGGCACCCGA TGTCGCTGTGCTTCACGGCTATTCCCGCTCCCAAGCTGCGACCGCTCTGG CACACGCGCTTAACTTACATCGAGCCGCCGGTGCAGCTCGCGCAGTTTTG GTCGTTCCACGCATTGCGTCCGCCGCCAAAGTATGGCAGCAACAACTCAG TGCGTCTCTTGACGAGGTGAAAGTTACTACCTTGCGTAGTGTGCGCGCGC CGCGCACAACATGTCTCAATTCTTTGCGCATGGAGCAGTACCCTGGCGTT GTGATTCTTGCAGATAAGTCTTTGAAGGACCCCTCTTGTTGGAATGAAGT TCGACAAGCTCTAAGGGAAAACCGAGTTGTCAATGCGTGGGACATTGTTA TATCAGAGATTCGTGGCGGTGATTCCACTCTGAACCTGTATCATTCTCCA TTTCGATTGGTTTCCGATAAGCAGGCCCGTTCGGGCATGTTCGTCATGTG CTCTGATGATGTTGCCCGTGTTCACAAAGAACAGTTTTCAAAGCATGCCG TTCGCGATTTTGTTCGGACTCAACTGCCTTCTTTGTCGTCCCTGAGTGAA GAATCAATTTGGATCACTCCCGCGTCTATTGGGAACAGTGCCTCTGCTGC GAAGAAGCCGACTACTCCGAAGCCGAAGTCGAAATGGAAGCAGAACCAAA AGGCCAGATCACAACAGCTTGAGGACTTGCGACGAAAAGCAGATGCGTTT GTTTCGGAGCTGAAGAACACACCACCAACTTATCGGCAAATACCGTCAAG GCTATCTGATGGAGAGCTTGTGCGTAGCCCCGAGGTTGATCATACGCCGC AATTGATGACTCGCACGAAAAGAGTGCCCAGGAGCCTTTCTGTGCCTATG AACACTTCACGTACACAAAAACGAGCCGCAGCTGGACGAGTACCGCTGCA GGAGAACAGAAAACCAACAATTGTCAAGGGGGAACCTCAGAGGAGAGATG GCTTTCAAGAGATTCGACGAGCATCCCCTTCGCAAGATGTATCTACGATG CGATCAAACGTTTCCCGAACTCGACGACGGTCCTCACTTCAGGATGTTCA ATCTCGTCGCCCTTATGACCGGCGTTCCATCAGTATTGTTGATCTCTCCG ATGACGACGAATCAGATGTTGAATGGCATACGCCACCAAGCCAAGTTGTC GCTCCACCTTTCTTTTCGGACGATTATAACAGAAGCGATGACTCATCAGA CGAATATGAGTGGAAGACCGCAATTGCTTCTCGCCGAAGGTCGAGGAGAA GCGTGAGTCGCAGCGCAGCGAGTCGAACTAAGAGCCGCATCGCTCGCCTT TCATCTGAGCGTATGCAGCGGAGCGGTGAACACCGTGACGCTGAATTCAC TCCACCCAGTCGCCTGTTAAGGAGATCTCCATGCGTACTGGATGAAGGCC TCGAGAGTCCAGATACTGTTCCATCCACAAAAGTTCATGACAGCGAATTT AGTGCACTGGGTGCTTCTGCAGGATCTGGGAGGACGGGATCTGGTAGTAG GAAGGTGGTGCGAAGACGACGAGCTTCAAATGAAAGGCCTCTTGGTAGGA GACGTGGTCCCCGACGATCAGTAAGCGCGGAGAACTTGGTTGACATGGAA GAAACATCAACTCCGGCCAGTTCCCCAATTGGAACTACCAGGCGCCATAG CAGCAGTCGTTCGTACTTTGCTTCAAGTCGTCGAGATGACGTTTTTGGAA CAAGCGTGAGAAGAAACATGCCATTTGTTGAGATCCCCGACAGCGACATT GAGGTCATTGATGTTGACCCCGAGGTGATTGATTTGTGCTCTGATGATGA CGACAGCGGGCATGACGGAATCTCTCCCGCTCGCGGCGTGGATTCGGAAA GGAGGCGTCGAGTTTCTTTGGAACGCACAAACATGCGTACAGCAAGTTTC GAAAGTAATGACGAAGGGGAGCTTAGCTATGGTTCATCTCTCATTTTGAC AGGTGTGACCAAGTATAATCCTCAACCAGATTCACTGCCTAAACCCGAGC GACAGAAGTATAATCGATGGCTAGGGATGGCAAGAAAGGCTGAAGCCCGT GGCCCGGAGGGATATGAGGCAGCAATCAAACTGTATACAAAATGTCTTAA CGTATGTGATGGAGATGATCATCTTACCAACAGGATTCTGTCCCTTACCA GCGAAACCGGGCTTCTGTCGAATAAGGACTTCTGCGAAGGTCGGATAACC TCAGTAATTTCAAAGAGAGCCCGTCCCCTGAGACGTCGTCTTAGGCGCAT TTGTAGCAGTGATAGTAGCAGTTAG back to topprotein sequence of Gcaud8258.t1 >Gcaud8258.t1 ID=Gcaud8258.t1|Name=Gcaud8258.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=875bp
MQPLTSESEVDPTPPAALLPPLYLNSARIRRIYESLRDDTIPLTPPSSTA TTPTPSPPPSPVHEPQLDPPDVPNTCDIEVAPPSDEQLGLPSAVNAALDD VPDAIKPLVLALWKAPDVAVLHGYSRSQAATALAHALNLHRAAGAARAVL VVPRIASAAKVWQQQLSASLDEVKVTTLRSVRAPRTTCLNSLRMEQYPGV VILADKSLKDPSCWNEVRQALRENRVVNAWDIVISEIRGGDSTLNLYHSP FRLVSDKQARSGMFVMCSDDVARVHKEQFSKHAVRDFVRTQLPSLSSLSE ESIWITPASIGNSASAAKKPTTPKPKSKWKQNQKARSQQLEDLRRKADAF VSELKNTPPTYRQIPSRLSDGELVRSPEVDHTPQLMTRTKRVPRSLSVPM NTSRTQKRAAAGRVPLQENRKPTIVKGEPQRRDGFQEIRRASPSQDVSTM RSNVSRTRRRSSLQDVQSRRPYDRRSISIVDLSDDDESDVEWHTPPSQVV APPFFSDDYNRSDDSSDEYEWKTAIASRRRSRRSVSRSAASRTKSRIARL SSERMQRSGEHRDAEFTPPSRLLRRSPCVLDEGLESPDTVPSTKVHDSEF SALGASAGSGRTGSGSRKVVRRRRASNERPLGRRRGPRRSVSAENLVDME ETSTPASSPIGTTRRHSSSRSYFASSRRDDVFGTSVRRNMPFVEIPDSDI EVIDVDPEVIDLCSDDDDSGHDGISPARGVDSERRRRVSLERTNMRTASF ESNDEGELSYGSSLILTGVTKYNPQPDSLPKPERQKYNRWLGMARKAEAR GPEGYEAAIKLYTKCLNVCDGDDHLTNRILSLTSETGLLSNKDFCEGRIT SVISKRARPLRRRLRRICSSDSSS* back to topmRNA from alignment at NODE_1520_length_9983_cov_4.292357:4315..6939+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8258.t1 ID=Gcaud8258.t1|Name=Gcaud8258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2625bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:4315..6939+ (Gracilaria caudata M_176_S67 male) ATGCAGCCGCTTACTTCCGAAAGCGAGGTCGATCCCACTCCCCCCGCCGC
TTTACTCCCGCCTCTCTATCTCAACTCAGCCCGAATCCGGAGGATTTATG
AATCGCTCCGAGATGACACCATCCCCTTAACCCCGCCTTCGTCCACGGCC
ACTACCCCCACCCCTTCCCCACCGCCATCGCCCGTTCACGAACCGCAGCT
CGACCCGCCCGATGTGCCCAACACCTGCGATATTGAAGTTGCGCCGCCCT
CGGACGAGCAGCTCGGACTGCCGTCAGCAGTTAATGCGGCTCTCGACGAT
GTACCCGACGCGATTAAACCTCTCGTGCTGGCGCTTTGGAAGGCACCCGA
TGTCGCTGTGCTTCACGGCTATTCCCGCTCCCAAGCTGCGACCGCTCTGG
CACACGCGCTTAACTTACATCGAGCCGCCGGTGCAGCTCGCGCAGTTTTG
GTCGTTCCACGCATTGCGTCCGCCGCCAAAGTATGGCAGCAACAACTCAG
TGCGTCTCTTGACGAGGTGAAAGTTACTACCTTGCGTAGTGTGCGCGCGC
CGCGCACAACATGTCTCAATTCTTTGCGCATGGAGCAGTACCCTGGCGTT
GTGATTCTTGCAGATAAGTCTTTGAAGGACCCCTCTTGTTGGAATGAAGT
TCGACAAGCTCTAAGGGAAAACCGAGTTGTCAATGCGTGGGACATTGTTA
TATCAGAGATTCGTGGCGGTGATTCCACTCTGAACCTGTATCATTCTCCA
TTTCGATTGGTTTCCGATAAGCAGGCCCGTTCGGGCATGTTCGTCATGTG
CTCTGATGATGTTGCCCGTGTTCACAAAGAACAGTTTTCAAAGCATGCCG
TTCGCGATTTTGTTCGGACTCAACTGCCTTCTTTGTCGTCCCTGAGTGAA
GAATCAATTTGGATCACTCCCGCGTCTATTGGGAACAGTGCCTCTGCTGC
GAAGAAGCCGACTACTCCGAAGCCGAAGTCGAAATGGAAGCAGAACCAAA
AGGCCAGATCACAACAGCTTGAGGACTTGCGACGAAAAGCAGATGCGTTT
GTTTCGGAGCTGAAGAACACACCACCAACTTATCGGCAAATACCGTCAAG
GCTATCTGATGGAGAGCTTGTGCGTAGCCCCGAGGTTGATCATACGCCGC
AATTGATGACTCGCACGAAAAGAGTGCCCAGGAGCCTTTCTGTGCCTATG
AACACTTCACGTACACAAAAACGAGCCGCAGCTGGACGAGTACCGCTGCA
GGAGAACAGAAAACCAACAATTGTCAAGGGGGAACCTCAGAGGAGAGATG
GCTTTCAAGAGATTCGACGAGCATCCCCTTCGCAAGATGTATCTACGATG
CGATCAAACGTTTCCCGAACTCGACGACGGTCCTCACTTCAGGATGTTCA
ATCTCGTCGCCCTTATGACCGGCGTTCCATCAGTATTGTTGATCTCTCCG
ATGACGACGAATCAGATGTTGAATGGCATACGCCACCAAGCCAAGTTGTC
GCTCCACCTTTCTTTTCGGACGATTATAACAGAAGCGATGACTCATCAGA
CGAATATGAGTGGAAGACCGCAATTGCTTCTCGCCGAAGGTCGAGGAGAA
GCGTGAGTCGCAGCGCAGCGAGTCGAACTAAGAGCCGCATCGCTCGCCTT
TCATCTGAGCGTATGCAGCGGAGCGGTGAACACCGTGACGCTGAATTCAC
TCCACCCAGTCGCCTGTTAAGGAGATCTCCATGCGTACTGGATGAAGGCC
TCGAGAGTCCAGATACTGTTCCATCCACAAAAGTTCATGACAGCGAATTT
AGTGCACTGGGTGCTTCTGCAGGATCTGGGAGGACGGGATCTGGTAGTAG
GAAGGTGGTGCGAAGACGACGAGCTTCAAATGAAAGGCCTCTTGGTAGGA
GACGTGGTCCCCGACGATCAGTAAGCGCGGAGAACTTGGTTGACATGGAA
GAAACATCAACTCCGGCCAGTTCCCCAATTGGAACTACCAGGCGCCATAG
CAGCAGTCGTTCGTACTTTGCTTCAAGTCGTCGAGATGACGTTTTTGGAA
CAAGCGTGAGAAGAAACATGCCATTTGTTGAGATCCCCGACAGCGACATT
GAGGTCATTGATGTTGACCCCGAGGTGATTGATTTGTGCTCTGATGATGA
CGACAGCGGGCATGACGGAATCTCTCCCGCTCGCGGCGTGGATTCGGAAA
GGAGGCGTCGAGTTTCTTTGGAACGCACAAACATGCGTACAGCAAGTTTC
GAAAGTAATGACGAAGGGGAGCTTAGCTATGGTTCATCTCTCATTTTGAC
AGGTGTGACCAAGTATAATCCTCAACCAGATTCACTGCCTAAACCCGAGC
GACAGAAGTATAATCGATGGCTAGGGATGGCAAGAAAGGCTGAAGCCCGT
GGCCCGGAGGGATATGAGGCAGCAATCAAACTGTATACAAAATGTCTTAA
CGTATGTGATGGAGATGATCATCTTACCAACAGGATTCTGTCCCTTACCA
GCGAAACCGGGCTTCTGTCGAATAAGGACTTCTGCGAAGGTCGGATAACC
TCAGTAATTTCAAAGAGAGCCCGTCCCCTGAGACGTCGTCTTAGGCGCAT
TTGTAGCAGTGATAGTAGCAGTTAG back to topCoding sequence (CDS) from alignment at NODE_1520_length_9983_cov_4.292357:4315..6939+ >Gcaud8258.t1 ID=Gcaud8258.t1|Name=Gcaud8258.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2625bp|location=Sequence derived from alignment at NODE_1520_length_9983_cov_4.292357:4315..6939+ (Gracilaria caudata M_176_S67 male) ATGCAGCCGCTTACTTCCGAAAGCGAGGTCGATCCCACTCCCCCCGCCGC TTTACTCCCGCCTCTCTATCTCAACTCAGCCCGAATCCGGAGGATTTATG AATCGCTCCGAGATGACACCATCCCCTTAACCCCGCCTTCGTCCACGGCC ACTACCCCCACCCCTTCCCCACCGCCATCGCCCGTTCACGAACCGCAGCT CGACCCGCCCGATGTGCCCAACACCTGCGATATTGAAGTTGCGCCGCCCT CGGACGAGCAGCTCGGACTGCCGTCAGCAGTTAATGCGGCTCTCGACGAT GTACCCGACGCGATTAAACCTCTCGTGCTGGCGCTTTGGAAGGCACCCGA TGTCGCTGTGCTTCACGGCTATTCCCGCTCCCAAGCTGCGACCGCTCTGG CACACGCGCTTAACTTACATCGAGCCGCCGGTGCAGCTCGCGCAGTTTTG GTCGTTCCACGCATTGCGTCCGCCGCCAAAGTATGGCAGCAACAACTCAG TGCGTCTCTTGACGAGGTGAAAGTTACTACCTTGCGTAGTGTGCGCGCGC CGCGCACAACATGTCTCAATTCTTTGCGCATGGAGCAGTACCCTGGCGTT GTGATTCTTGCAGATAAGTCTTTGAAGGACCCCTCTTGTTGGAATGAAGT TCGACAAGCTCTAAGGGAAAACCGAGTTGTCAATGCGTGGGACATTGTTA TATCAGAGATTCGTGGCGGTGATTCCACTCTGAACCTGTATCATTCTCCA TTTCGATTGGTTTCCGATAAGCAGGCCCGTTCGGGCATGTTCGTCATGTG CTCTGATGATGTTGCCCGTGTTCACAAAGAACAGTTTTCAAAGCATGCCG TTCGCGATTTTGTTCGGACTCAACTGCCTTCTTTGTCGTCCCTGAGTGAA GAATCAATTTGGATCACTCCCGCGTCTATTGGGAACAGTGCCTCTGCTGC GAAGAAGCCGACTACTCCGAAGCCGAAGTCGAAATGGAAGCAGAACCAAA AGGCCAGATCACAACAGCTTGAGGACTTGCGACGAAAAGCAGATGCGTTT GTTTCGGAGCTGAAGAACACACCACCAACTTATCGGCAAATACCGTCAAG GCTATCTGATGGAGAGCTTGTGCGTAGCCCCGAGGTTGATCATACGCCGC AATTGATGACTCGCACGAAAAGAGTGCCCAGGAGCCTTTCTGTGCCTATG AACACTTCACGTACACAAAAACGAGCCGCAGCTGGACGAGTACCGCTGCA GGAGAACAGAAAACCAACAATTGTCAAGGGGGAACCTCAGAGGAGAGATG GCTTTCAAGAGATTCGACGAGCATCCCCTTCGCAAGATGTATCTACGATG CGATCAAACGTTTCCCGAACTCGACGACGGTCCTCACTTCAGGATGTTCA ATCTCGTCGCCCTTATGACCGGCGTTCCATCAGTATTGTTGATCTCTCCG ATGACGACGAATCAGATGTTGAATGGCATACGCCACCAAGCCAAGTTGTC GCTCCACCTTTCTTTTCGGACGATTATAACAGAAGCGATGACTCATCAGA CGAATATGAGTGGAAGACCGCAATTGCTTCTCGCCGAAGGTCGAGGAGAA GCGTGAGTCGCAGCGCAGCGAGTCGAACTAAGAGCCGCATCGCTCGCCTT TCATCTGAGCGTATGCAGCGGAGCGGTGAACACCGTGACGCTGAATTCAC TCCACCCAGTCGCCTGTTAAGGAGATCTCCATGCGTACTGGATGAAGGCC TCGAGAGTCCAGATACTGTTCCATCCACAAAAGTTCATGACAGCGAATTT AGTGCACTGGGTGCTTCTGCAGGATCTGGGAGGACGGGATCTGGTAGTAG GAAGGTGGTGCGAAGACGACGAGCTTCAAATGAAAGGCCTCTTGGTAGGA GACGTGGTCCCCGACGATCAGTAAGCGCGGAGAACTTGGTTGACATGGAA GAAACATCAACTCCGGCCAGTTCCCCAATTGGAACTACCAGGCGCCATAG CAGCAGTCGTTCGTACTTTGCTTCAAGTCGTCGAGATGACGTTTTTGGAA CAAGCGTGAGAAGAAACATGCCATTTGTTGAGATCCCCGACAGCGACATT GAGGTCATTGATGTTGACCCCGAGGTGATTGATTTGTGCTCTGATGATGA CGACAGCGGGCATGACGGAATCTCTCCCGCTCGCGGCGTGGATTCGGAAA GGAGGCGTCGAGTTTCTTTGGAACGCACAAACATGCGTACAGCAAGTTTC GAAAGTAATGACGAAGGGGAGCTTAGCTATGGTTCATCTCTCATTTTGAC AGGTGTGACCAAGTATAATCCTCAACCAGATTCACTGCCTAAACCCGAGC GACAGAAGTATAATCGATGGCTAGGGATGGCAAGAAAGGCTGAAGCCCGT GGCCCGGAGGGATATGAGGCAGCAATCAAACTGTATACAAAATGTCTTAA CGTATGTGATGGAGATGATCATCTTACCAACAGGATTCTGTCCCTTACCA GCGAAACCGGGCTTCTGTCGAATAAGGACTTCTGCGAAGGTCGGATAACC TCAGTAATTTCAAAGAGAGCCCGTCCCCTGAGACGTCGTCTTAGGCGCAT TTGTAGCAGTGATAGTAGCAGTTAG back to top
|