Gcaud8244.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8244.t1
Unique Name	Gcaud8244.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:14012..15259 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	121225.PHUM559310-PA
Preferred name	WDR12
PFAMs	NLE,WD40
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14863,ko:K15456
GOs	GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008150,GO:0008152,GO:0008283,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0023052,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070545,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	2.92e-19
EggNOG OGs	KOG0313@1\|root,KOG0313@2759\|Eukaryota,38BM0@33154\|Opisthokonta,3BDJS@33208\|Metazoa,3CVCD@33213\|Bilateria,41TUR@6656\|Arthropoda,3SH1S@50557\|Insecta,3E8RV@33342\|Paraneoptera
Description	Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
COG category	Z
BRITE	ko00000,ko03009,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8244	Gcaud8244	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 14012..15259 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8244.t1.start1	Gcaud8244.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 14012..14014 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8244.t1.CDS1	Gcaud8244.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 14012..15259 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8244.t1.exon1	Gcaud8244.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 14012..15259 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8244.t1.stop1	Gcaud8244.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 15257..15259 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8244.t1	Gcaud8244.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 14012..15259 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+

mRNA sequence

>Gcaud8244.t1 ID=Gcaud8244.t1|Name=Gcaud8244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=416bp
MGGPTATSSSRALQVRFKSGVEQEAYKAAHNALLQVPAHFGRKSLRTVIH
TLLNLPEEDKPDFHFLIDGIPLRTTLEKFLERRNLSFEHTITLTYYLPIL
DPSSKGDKTISESWISSLDADANCRVLAGLFSGRVSILHHDKIILNESNF
SEPHKAPVKDVRWLRDDYFLTVSSDETACVWRFNGDDAQIVSRMDTNETN
PASFSAASVKQETNIAALGCVDGSIWLTQDCLDGVSEPSETKKRKNVPSI
SASRVTDGNLCVSGLTWRENEIISVGWDGFTNVFCAETCMKKTTIPSGGK
ALTAVATVQNGDFCVVSAMDGAIRMIDGRSGNGVVGACGKRDAHRGIVTD
VIADEMLVVSTGVDGCVKFWDRRSLLSPQKTVRSDGKLFAVDVVKGENIS
VFAAGQTGAVLRLEV*

spliced messenger RNA

>Gcaud8244.t1 ID=Gcaud8244.t1|Name=Gcaud8244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGCCCAACCGCAACTTCGTCTTCAAGAGCATTGCAGGTTCGCTT
CAAGAGTGGAGTTGAACAGGAAGCCTATAAAGCAGCACATAATGCGTTGC
TGCAAGTCCCAGCTCACTTTGGCCGCAAATCCTTAAGAACTGTGATACAC
ACATTGCTCAATCTTCCCGAAGAAGACAAGCCAGACTTCCACTTTTTAAT
CGATGGCATTCCATTACGCACTACCCTCGAGAAGTTTCTTGAACGAAGAA
ACTTGTCCTTCGAACACACTATCACTCTCACGTACTACCTTCCAATCTTA
GACCCGAGTTCCAAAGGCGACAAAACTATATCGGAAAGTTGGATTTCTTC
GCTTGATGCAGATGCGAACTGTCGCGTGCTTGCAGGCTTGTTTTCCGGTC
GAGTTTCAATACTACACCACGATAAAATCATTCTCAACGAATCTAACTTC
TCCGAACCTCACAAAGCTCCAGTCAAAGATGTGCGATGGCTCCGTGATGA
CTACTTTCTAACAGTTTCGTCAGATGAAACAGCGTGTGTGTGGCGGTTCA
ATGGCGATGATGCGCAGATTGTCTCTCGTATGGATACCAACGAAACAAAC
CCAGCCTCATTTTCGGCAGCGAGTGTTAAACAAGAGACCAACATCGCTGC
ATTGGGCTGCGTGGACGGTTCAATTTGGTTGACTCAAGATTGCTTGGACG
GCGTGAGCGAACCATCCGAGACAAAGAAAAGGAAGAACGTACCCAGCATT
TCTGCTAGTAGGGTAACGGATGGTAATCTATGCGTCAGCGGACTAACATG
GCGCGAAAATGAAATCATTTCCGTCGGTTGGGATGGATTCACGAACGTCT
TCTGCGCAGAAACATGCATGAAGAAGACAACAATTCCGAGCGGAGGAAAG
GCATTGACAGCAGTAGCGACAGTACAGAATGGGGATTTCTGTGTAGTAAG
TGCAATGGACGGAGCAATACGCATGATTGATGGAAGATCAGGGAATGGAG
TGGTAGGTGCTTGCGGCAAACGAGATGCACATCGGGGAATTGTCACAGAT
GTCATTGCTGACGAGATGTTAGTGGTGAGTACTGGTGTAGATGGGTGTGT
AAAGTTTTGGGATCGAAGAAGTTTGTTAAGTCCGCAAAAAACGGTGCGTT
CGGACGGCAAGCTGTTCGCGGTAGATGTAGTGAAAGGAGAAAACATATCC
GTGTTTGCCGCTGGACAAACTGGAGCTGTGCTTAGACTTGAGGTGTAA

protein sequence of Gcaud8244.t1

>Gcaud8244.t1 ID=Gcaud8244.t1|Name=Gcaud8244.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=416bp
MGGPTATSSSRALQVRFKSGVEQEAYKAAHNALLQVPAHFGRKSLRTVIH
TLLNLPEEDKPDFHFLIDGIPLRTTLEKFLERRNLSFEHTITLTYYLPIL
DPSSKGDKTISESWISSLDADANCRVLAGLFSGRVSILHHDKIILNESNF
SEPHKAPVKDVRWLRDDYFLTVSSDETACVWRFNGDDAQIVSRMDTNETN
PASFSAASVKQETNIAALGCVDGSIWLTQDCLDGVSEPSETKKRKNVPSI
SASRVTDGNLCVSGLTWRENEIISVGWDGFTNVFCAETCMKKTTIPSGGK
ALTAVATVQNGDFCVVSAMDGAIRMIDGRSGNGVVGACGKRDAHRGIVTD
VIADEMLVVSTGVDGCVKFWDRRSLLSPQKTVRSDGKLFAVDVVKGENIS
VFAAGQTGAVLRLEV*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8244.t1 ID=Gcaud8244.t1|Name=Gcaud8244.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+ (Gracilaria caudata M_176_S67 male)
ATGGGAGGCCCAACCGCAACTTCGTCTTCAAGAGCATTGCAGGTTCGCTT
CAAGAGTGGAGTTGAACAGGAAGCCTATAAAGCAGCACATAATGCGTTGC
TGCAAGTCCCAGCTCACTTTGGCCGCAAATCCTTAAGAACTGTGATACAC
ACATTGCTCAATCTTCCCGAAGAAGACAAGCCAGACTTCCACTTTTTAAT
CGATGGCATTCCATTACGCACTACCCTCGAGAAGTTTCTTGAACGAAGAA
ACTTGTCCTTCGAACACACTATCACTCTCACGTACTACCTTCCAATCTTA
GACCCGAGTTCCAAAGGCGACAAAACTATATCGGAAAGTTGGATTTCTTC
GCTTGATGCAGATGCGAACTGTCGCGTGCTTGCAGGCTTGTTTTCCGGTC
GAGTTTCAATACTACACCACGATAAAATCATTCTCAACGAATCTAACTTC
TCCGAACCTCACAAAGCTCCAGTCAAAGATGTGCGATGGCTCCGTGATGA
CTACTTTCTAACAGTTTCGTCAGATGAAACAGCGTGTGTGTGGCGGTTCA
ATGGCGATGATGCGCAGATTGTCTCTCGTATGGATACCAACGAAACAAAC
CCAGCCTCATTTTCGGCAGCGAGTGTTAAACAAGAGACCAACATCGCTGC
ATTGGGCTGCGTGGACGGTTCAATTTGGTTGACTCAAGATTGCTTGGACG
GCGTGAGCGAACCATCCGAGACAAAGAAAAGGAAGAACGTACCCAGCATT
TCTGCTAGTAGGGTAACGGATGGTAATCTATGCGTCAGCGGACTAACATG
GCGCGAAAATGAAATCATTTCCGTCGGTTGGGATGGATTCACGAACGTCT
TCTGCGCAGAAACATGCATGAAGAAGACAACAATTCCGAGCGGAGGAAAG
GCATTGACAGCAGTAGCGACAGTACAGAATGGGGATTTCTGTGTAGTAAG
TGCAATGGACGGAGCAATACGCATGATTGATGGAAGATCAGGGAATGGAG
TGGTAGGTGCTTGCGGCAAACGAGATGCACATCGGGGAATTGTCACAGAT
GTCATTGCTGACGAGATGTTAGTGGTGAGTACTGGTGTAGATGGGTGTGT
AAAGTTTTGGGATCGAAGAAGTTTGTTAAGTCCGCAAAAAACGGTGCGTT
CGGACGGCAAGCTGTTCGCGGTAGATGTAGTGAAAGGAGAAAACATATCC
GTGTTTGCCGCTGGACAAACTGGAGCTGTGCTTAGACTTGAGGTGTAA

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+

>Gcaud8244.t1 ID=Gcaud8244.t1|Name=Gcaud8244.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1248bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:14012..15259+ (Gracilaria caudata M_176_S67 male)
ATGGGAGGCCCAACCGCAACTTCGTCTTCAAGAGCATTGCAGGTTCGCTT
CAAGAGTGGAGTTGAACAGGAAGCCTATAAAGCAGCACATAATGCGTTGC
TGCAAGTCCCAGCTCACTTTGGCCGCAAATCCTTAAGAACTGTGATACAC
ACATTGCTCAATCTTCCCGAAGAAGACAAGCCAGACTTCCACTTTTTAAT
CGATGGCATTCCATTACGCACTACCCTCGAGAAGTTTCTTGAACGAAGAA
ACTTGTCCTTCGAACACACTATCACTCTCACGTACTACCTTCCAATCTTA
GACCCGAGTTCCAAAGGCGACAAAACTATATCGGAAAGTTGGATTTCTTC
GCTTGATGCAGATGCGAACTGTCGCGTGCTTGCAGGCTTGTTTTCCGGTC
GAGTTTCAATACTACACCACGATAAAATCATTCTCAACGAATCTAACTTC
TCCGAACCTCACAAAGCTCCAGTCAAAGATGTGCGATGGCTCCGTGATGA
CTACTTTCTAACAGTTTCGTCAGATGAAACAGCGTGTGTGTGGCGGTTCA
ATGGCGATGATGCGCAGATTGTCTCTCGTATGGATACCAACGAAACAAAC
CCAGCCTCATTTTCGGCAGCGAGTGTTAAACAAGAGACCAACATCGCTGC
ATTGGGCTGCGTGGACGGTTCAATTTGGTTGACTCAAGATTGCTTGGACG
GCGTGAGCGAACCATCCGAGACAAAGAAAAGGAAGAACGTACCCAGCATT
TCTGCTAGTAGGGTAACGGATGGTAATCTATGCGTCAGCGGACTAACATG
GCGCGAAAATGAAATCATTTCCGTCGGTTGGGATGGATTCACGAACGTCT
TCTGCGCAGAAACATGCATGAAGAAGACAACAATTCCGAGCGGAGGAAAG
GCATTGACAGCAGTAGCGACAGTACAGAATGGGGATTTCTGTGTAGTAAG
TGCAATGGACGGAGCAATACGCATGATTGATGGAAGATCAGGGAATGGAG
TGGTAGGTGCTTGCGGCAAACGAGATGCACATCGGGGAATTGTCACAGAT
GTCATTGCTGACGAGATGTTAGTGGTGAGTACTGGTGTAGATGGGTGTGT
AAAGTTTTGGGATCGAAGAAGTTTGTTAAGTCCGCAAAAAACGGTGCGTT
CGGACGGCAAGCTGTTCGCGGTAGATGTAGTGAAAGGAGAAAACATATCC
GTGTTTGCCGCTGGACAAACTGGAGCTGTGCTTAGACTTGAGGTGTAA