Gcaud2420.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2420.t1
Unique Name	Gcaud2420.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:13962..14660 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708491.1
Preferred name	RPS9
PFAMs	Ribosomal_S4,S4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02997,ko:K17675
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006417,GO:0006450,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071944,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1990904,GO:2000112
Evalue	4.09e-99
EggNOG OGs	COG0522@1\|root,KOG3301@2759\|Eukaryota
EC	3.6.4.13
Description	positive regulation of translational fidelity
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2420	Gcaud2420	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 13962..14660 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1	Gcaud2420.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 13962..14660 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1.stop1	Gcaud2420.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 13962..13964 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1.CDS1	Gcaud2420.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 13962..14524 -
Gcaud2420.t1.CDS2	Gcaud2420.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 14642..14660 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1.exon1	Gcaud2420.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 13962..14524 -
Gcaud2420.t1.exon2	Gcaud2420.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 14642..14660 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1.intron1	Gcaud2420.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_295_length_31939_cov_4.445679 14525..14641 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2420.t1.start1	Gcaud2420.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 14658..14660 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:13962..14660-
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:13962..14660-

mRNA sequence

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGAGEDEDDE*

spliced messenger RNA

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:13962..14660- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACTATCGTAACACCTCGAAGACATATCGTACTCCTCGTCGACC
GTACGAGAAGGAGCGTCTTGACTCGGAGCTTCAACTCGCCGGAAAGTACG
GTCTCCGCAACAAGCGTGAAATCTGGCGCGTCCAGCTCGTGCTGTCCAAG
ATCCGATCTGCTGCTCGTGAGCTGCTCACCCTAGAGGAGAAGGATCCGCG
TCGTATTTTCGAGGGCAATGCACTTTTACGTCGTCTCACTCGTCTTGGGC
TCTTGGACGAATCGCGACAAGCTCTCGATTACGTGCTTTCTCTCAAGGTT
CAAGATTTCTTGGAGCGTCGCCTACAGACTCAGGTTGTCAAGCTTGGTCT
TGCTAAGTCCATTCACCATGCTCGATGCTTGATCAAGCAGCGTCACATCC
GTGTCGGCAAGCAGCTTGTGAACGTTCCTTCCTTCACCGTGCGAGTTGAT
TCGCAGAAGCATATTGACTTTGCTCTTACTTCTCCGTTTGGTGGTGGACG
ACCTGGTCGTGTCAAGCGCAGGGCAATTGCAAGGCGTAAGAGCAGCGGTG
GCGGCGCTGGCGAAGATGAAGATGACGAGTAA

protein sequence of Gcaud2420.t1

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGAGEDEDDE*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:13962..14660-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:13962..14660- (Gracilaria caudata M_176_S67 male)
ATGACGAACTATCGTAACAGTAAGTTCTCCGCCATCTGAAACCCGTTTGT
GATCTTGACTACAATTAGCTGGGTACGATTCGTTACCACTCACACTGACT
CGCTTCTATGAATCGTTTGTGGTTTTGGCACCTAAGCCTCGAAGACATAT
CGTACTCCTCGTCGACCGTACGAGAAGGAGCGTCTTGACTCGGAGCTTCA
ACTCGCCGGAAAGTACGGTCTCCGCAACAAGCGTGAAATCTGGCGCGTCC
AGCTCGTGCTGTCCAAGATCCGATCTGCTGCTCGTGAGCTGCTCACCCTA
GAGGAGAAGGATCCGCGTCGTATTTTCGAGGGCAATGCACTTTTACGTCG
TCTCACTCGTCTTGGGCTCTTGGACGAATCGCGACAAGCTCTCGATTACG
TGCTTTCTCTCAAGGTTCAAGATTTCTTGGAGCGTCGCCTACAGACTCAG
GTTGTCAAGCTTGGTCTTGCTAAGTCCATTCACCATGCTCGATGCTTGAT
CAAGCAGCGTCACATCCGTGTCGGCAAGCAGCTTGTGAACGTTCCTTCCT
TCACCGTGCGAGTTGATTCGCAGAAGCATATTGACTTTGCTCTTACTTCT
CCGTTTGGTGGTGGACGACCTGGTCGTGTCAAGCGCAGGGCAATTGCAAG
GCGTAAGAGCAGCGGTGGCGGCGCTGGCGAAGATGAAGATGACGAGTAA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:13962..14660-

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:13962..14660- (Gracilaria caudata M_176_S67 male)
ATGACGAACTATCGTAACACCTCGAAGACATATCGTACTCCTCGTCGACC
GTACGAGAAGGAGCGTCTTGACTCGGAGCTTCAACTCGCCGGAAAGTACG
GTCTCCGCAACAAGCGTGAAATCTGGCGCGTCCAGCTCGTGCTGTCCAAG
ATCCGATCTGCTGCTCGTGAGCTGCTCACCCTAGAGGAGAAGGATCCGCG
TCGTATTTTCGAGGGCAATGCACTTTTACGTCGTCTCACTCGTCTTGGGC
TCTTGGACGAATCGCGACAAGCTCTCGATTACGTGCTTTCTCTCAAGGTT
CAAGATTTCTTGGAGCGTCGCCTACAGACTCAGGTTGTCAAGCTTGGTCT
TGCTAAGTCCATTCACCATGCTCGATGCTTGATCAAGCAGCGTCACATCC
GTGTCGGCAAGCAGCTTGTGAACGTTCCTTCCTTCACCGTGCGAGTTGAT
TCGCAGAAGCATATTGACTTTGCTCTTACTTCTCCGTTTGGTGGTGGACG
ACCTGGTCGTGTCAAGCGCAGGGCAATTGCAAGGCGTAAGAGCAGCGGTG
GCGGCGCTGGCGAAGATGAAGATGACGAGTAA