Gcaud2420.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2420.t1
Unique NameGcaud2420.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Homology
BLAST of Gcaud2420.t1 vs. uniprot
Match: R7QCS3_CHOCR (40S ribosomal protein S9 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QCS3_CHOCR)

HSP 1 Score: 329 bits (844), Expect = 2.750e-113
Identity = 168/178 (94.38%), Postives = 173/178 (97.19%), Query Frame = 0
Query:    1 MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIAR 178
            M NYRNTSKTYRTPRRP+EKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTL+EKDPRR+FEG ALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLI+QRHIRVGKQLVNVPSF VRVDSQKHIDF+L SPFGGGRPGRVKRRAI R
Sbjct:    1 MVNYRNTSKTYRTPRRPFEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLDEKDPRRVFEGTALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIRQRHIRVGKQLVNVPSFMVRVDSQKHIDFSLNSPFGGGRPGRVKRRAIER 178          
BLAST of Gcaud2420.t1 vs. uniprot
Match: UPI001E1D7E10 (LOW QUALITY PROTEIN: 40S ribosomal protein S9-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7E10)

HSP 1 Score: 299 bits (766), Expect = 5.170e-101
Identity = 155/193 (80.31%), Postives = 167/193 (86.53%), Query Frame = 0
Query:    1 MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIARRXXXXXXXXXDEDDE 193
            M ++R  S T+RTPRRP+EKERLD+ELQL G YG RNKRE+WRVQ VLSKIRSAARELLTLEEKDPRR+F G ALLRRLTRLGLLDE++QALDYVLSLK+QDFLERRLQ QV KLGLAKSIHHAR LIKQRHIRVGKQLVNVPSF VR+DSQKHIDFAL SPFGGGRPGRVKRRAIA R         + DDE
Sbjct:    1 MPDHRKYSTTFRTPRRPFEKERLDNELQLVGMYGXRNKREVWRVQFVLSKIRSAARELLTLEEKDPRRVFXGFALLRRLTRLGLLDETKQALDYVLSLKIQDFLERRLQKQVFKLGLAKSIHHARVLIKQRHIRVGKQLVNVPSFMVRIDSQKHIDFALNSPFGGGRPGRVKRRAIANRKGGGGDGGAEMDDE 193          
BLAST of Gcaud2420.t1 vs. uniprot
Match: M2W800_GALSU (40S ribosomal protein S9e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W800_GALSU)

HSP 1 Score: 295 bits (756), Expect = 7.040e-100
Identity = 148/174 (85.06%), Postives = 163/174 (93.68%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAI 176
            NYR  SKTYRTPRRP+EKERLD+EL+L G+YGLRNKRE+WRV+  LSKIR+AAR+LLTLEEKDPRRIFEGNALLRRLTR GLLDE+RQ+LD+VLSLKVQD LERRLQTQV+KLGLAKSIHHAR LI+QRHIRVGKQLVNVPSF VRVDSQKHIDF+L SPFGGGRPGRVKRR +
Sbjct:    4 NYRTCSKTYRTPRRPFEKERLDAELKLVGEYGLRNKRELWRVEFALSKIRAAARDLLTLEEKDPRRIFEGNALLRRLTRFGLLDETRQSLDHVLSLKVQDLLERRLQTQVLKLGLAKSIHHARVLIRQRHIRVGKQLVNVPSFMVRVDSQKHIDFSLDSPFGGGRPGRVKRRKL 177          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A5J4YNF5_PORPP (40S ribosomal protein S9-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNF5_PORPP)

HSP 1 Score: 289 bits (740), Expect = 1.860e-97
Identity = 146/171 (85.38%), Postives = 159/171 (92.98%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKR 173
            +YRN SKT RTPRRP+EKERLD ELQ+ GKYGL+NKRE+WRVQ+VLSKIRSAAR+LLTLE +DP+RIFEG ALLRRLTRLGLLDE+ QALDYVLSLKV DFLERRLQTQV KLGLAKSIHHAR LI+QRH+RVGKQLVNVPSF VRVDSQKHIDFAL+SPFGGG PGRVKR
Sbjct:    4 DYRNRSKTSRTPRRPFEKERLDQELQIVGKYGLKNKREVWRVQMVLSKIRSAARDLLTLEPEDPKRIFEGRALLRRLTRLGLLDENNQALDYVLSLKVNDFLERRLQTQVFKLGLAKSIHHARVLIRQRHVRVGKQLVNVPSFLVRVDSQKHIDFALSSPFGGGPPGRVKR 174          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A7S1TGT7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGT7_9RHOD)

HSP 1 Score: 288 bits (736), Expect = 7.300e-97
Identity = 150/191 (78.53%), Postives = 166/191 (86.91%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIARRXXXXXXXXXDEDDE 193
            +YR  SKT RTPRRP+EKERLD+ELQL GKYGLRNKRE+WRV L LS+IRS+AR LLTLEEK+PRRIFEG+A+LRRLTRLGLLDE RQ+LDYVLSLKVQDFLERRLQTQV +LGLAKSIHHAR LI QRHIRVGKQ+VNVPSF VR DSQKHIDF+L+SPFGGGRPGRVKRR +  +         DEDDE
Sbjct:    4 DYRRYSKTSRTPRRPFEKERLDAELQLVGKYGLRNKREVWRVLLALSRIRSSARSLLTLEEKNPRRIFEGSAMLRRLTRLGLLDEKRQSLDYVLSLKVQDFLERRLQTQVFELGLAKSIHHARVLINQRHIRVGKQMVNVPSFLVRTDSQKHIDFSLSSPFGGGRPGRVKRRNMRSKGKVGG----DEDDE 190          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A1X6NYN7_PORUM (Ribosomal_S4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYN7_PORUM)

HSP 1 Score: 283 bits (725), Expect = 3.830e-95
Identity = 143/191 (74.87%), Postives = 166/191 (86.91%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIARRXXXXXXXXXDEDDE 193
            +YRN SKT RTPRRP+EKERLDSEL+  G+YGLRNKRE+WRVQLVLSK+R+ AR LLTL+EKDPRR+FEG ALLRRLTRLG+LDE +QALDYVLSL V++FLERRLQTQV +LGLAKS+HHAR +I QRHIRVGKQLVNVPSF VR+DSQKHIDFAL SP+GGGRPGRV+RRA+  +         DED++
Sbjct:    4 DYRNYSKTSRTPRRPFEKERLDSELETVGQYGLRNKREVWRVQLVLSKMRTTARTLLTLDEKDPRRMFEGAALLRRLTRLGVLDEKKQALDYVLSLNVKEFLERRLQTQVFRLGLAKSMHHARVIIHQRHIRVGKQLVNVPSFLVRMDSQKHIDFALHSPYGGGRPGRVRRRALRNKAKKKESGGDDEDED 194          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A7J7IPL0_9RHOD (40S ribosomal protein S9 n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7J7IPL0_9RHOD)

HSP 1 Score: 280 bits (715), Expect = 1.190e-93
Identity = 145/189 (76.72%), Postives = 160/189 (84.66%), Query Frame = 0
Query:    3 NYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIARRXXXXXXXXXDED 191
            +YRN SK Y+TPRRP+EKERLD+EL++ G+YGLRNKRE+WRVQ  LSKIR+AARELLT +EKD RRI EG ALLRRLTR GLLD+++Q L+YVLSLKVQDFLERRLQTQV KLGLAKSIHHAR LI QRHIRVGKQLV VPSF VRVDSQKHIDFA TSPFGGGRPGRVKRR + R          DED
Sbjct:    4 SYRNCSKVYKTPRRPFEKERLDAELKICGEYGLRNKREVWRVQYALSKIRAAARELLTKDEKDERRIVEGAALLRRLTRYGLLDQTQQDLNYVLSLKVQDFLERRLQTQVFKLGLAKSIHHARVLILQRHIRVGKQLVTVPSFMVRVDSQKHIDFAPTSPFGGGRPGRVKRRRLRREAGGGAGDGEDED 192          
BLAST of Gcaud2420.t1 vs. uniprot
Match: E9D4L0_COCPS (40S ribosomal protein S9 n=8 Tax=Onygenales TaxID=33183 RepID=E9D4L0_COCPS)

HSP 1 Score: 278 bits (711), Expect = 4.520e-93
Identity = 137/172 (79.65%), Postives = 157/172 (91.28%), Query Frame = 0
Query:    5 RNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAI 176
            R+ SKTY+ PRRPYE  RLDSEL++ G+YGLRNKRE+WRVQL LSKIR AARELLTLEEKDP+R+FEGNAL+RRL R+G+LDESR  LDYVL+LKV+DFLERRLQTQV +LGLAKSIHHAR LI+QRHIRVGKQ+VNVPSF VR+DSQKHIDFALTSP GGGRPGRV+R+ +
Sbjct:    4 RSYSKTYKVPRRPYESARLDSELKMVGEYGLRNKREVWRVQLTLSKIRRAARELLTLEEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKVEDFLERRLQTQVYRLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFIVRLDSQKHIDFALTSPLGGGRPGRVRRKKM 175          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A7S0Q8A1_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0Q8A1_9EUKA)

HSP 1 Score: 278 bits (710), Expect = 8.730e-93
Identity = 139/174 (79.89%), Postives = 158/174 (90.80%), Query Frame = 0
Query:    4 YRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRRAIA 177
            YRN SKT++TPRRP+EKERLD EL+L G+YGLRNKRE+WRVQ  L+KIR AAR LLTL+EKD +R+FEG ALLRRLTRLGLLDE++Q LD+VL LK+QDFLERRLQTQV KLGLAKSIHHAR LI+QRHIRVGKQ+VNVPSF VR+DSQKHIDFALTSPFGGGR GRVKR+ +A
Sbjct:    7 YRNYSKTFKTPRRPFEKERLDQELKLIGEYGLRNKREVWRVQFQLAKIRHAARTLLTLDEKDAKRLFEGAALLRRLTRLGLLDETKQKLDFVLGLKIQDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRIDSQKHIDFALTSPFGGGRFGRVKRKHLA 180          
BLAST of Gcaud2420.t1 vs. uniprot
Match: A0A0H2SFL3_9AGAM (40S ribosomal protein S9 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2SFL3_9AGAM)

HSP 1 Score: 277 bits (709), Expect = 9.760e-93
Identity = 134/170 (78.82%), Postives = 158/170 (92.94%), Query Frame = 0
Query:    5 RNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSKIRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKVQDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVDSQKHIDFALTSPFGGGRPGRVKRR 174
            RN SKTY+ PRRP+E  RLD+E++LAG+YGLRNKREIWR+ LVLSKIR AARELL LEEKDP+R+FEGNAL+RRL R+G+LDE+R+ LDYVL+LK++DFLERRLQTQV KLGLAKSIHHAR L++QRHIRVGKQ+VNVPSF VR+DSQ+HIDFALTSP+GGGRPGRVKR+
Sbjct:    6 RNHSKTYKVPRRPFESARLDAEMKLAGEYGLRNKREIWRISLVLSKIRRAARELLKLEEKDPKRLFEGNALIRRLVRIGVLDETRRRLDYVLALKIEDFLERRLQTQVFKLGLAKSIHHARVLVRQRHIRVGKQIVNVPSFVVRLDSQRHIDFALTSPYGGGRPGRVKRK 175          
The following BLAST results are available for this feature:
BLAST of Gcaud2420.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QCS3_CHOCR2.750e-11394.3840S ribosomal protein S9 n=2 Tax=Rhodymeniophycida... [more]
UPI001E1D7E105.170e-10180.31LOW QUALITY PROTEIN: 40S ribosomal protein S9-like... [more]
M2W800_GALSU7.040e-10085.0640S ribosomal protein S9e n=1 Tax=Galdieria sulphu... [more]
A0A5J4YNF5_PORPP1.860e-9785.3840S ribosomal protein S9-1 n=1 Tax=Porphyridium pu... [more]
A0A7S1TGT7_9RHOD7.300e-9778.53Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NYN7_PORUM3.830e-9574.87Ribosomal_S4 domain-containing protein n=1 Tax=Por... [more]
A0A7J7IPL0_9RHOD1.190e-9376.7240S ribosomal protein S9 n=3 Tax=cellular organism... [more]
E9D4L0_COCPS4.520e-9379.6540S ribosomal protein S9 n=8 Tax=Onygenales TaxID=... [more]
A0A7S0Q8A1_9EUKA8.730e-9379.89Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A0H2SFL3_9AGAM9.760e-9378.8240S ribosomal protein S9 n=1 Tax=Schizopora parado... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 5..105
e-value: 4.2E-22
score: 89.4
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 10..61
e-value: 7.9E-6
score: 26.7
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 106..170
e-value: 3.5E-4
score: 29.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 106..149
e-value: 8.1E-11
score: 41.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 106..150
e-value: 1.98184E-7
score: 44.5478
IPR005710Ribosomal protein S4/S9, eukaryotic/archaealTIGRFAMTIGR01018TIGR01018coord: 2..163
e-value: 1.7E-66
score: 221.1
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 105..160
e-value: 1.4E-12
score: 49.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..193
NoneNo IPR availablePANTHERPTHR11831:SF540S RIBOSOMAL PROTEIN S9coord: 9..191
NoneNo IPR availablePROSITEPS50889S4coord: 106..180
score: 10.484679
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 9..157
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 9..191
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 104..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_295_length_31939_cov_4.445679contigNODE_295_length_31939_cov_4.445679:13962..14660 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2420.t1Gcaud2420.t1Gracilaria caudata M_176_S67 malemRNANODE_295_length_31939_cov_4.445679 13962..14660 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2420.t1 ID=Gcaud2420.t1|Name=Gcaud2420.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MTNYRNTSKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGAGEDEDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR005710Ribosomal_S4/S9_euk/arc
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9
IPR018079Ribosomal_S4_CS