Gcaud2346.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2346.t1
Unique NameGcaud2346.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:31089..31523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004347944.1
Preferred nameLSM1
PFAMsLSM
Max annot lvl33154|Opisthokonta
KEGG koko:K12620
KEGG Pathwayko03018,map03018
KEGG ModuleM00397
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990124,GO:1990726,GO:1990904,GO:2000026
Evalue9.07e-28
EggNOG OGsKOG1782@1|root,KOG1782@2759|Eukaryota,3A6A1@33154|Opisthokonta
Descriptiondeadenylation-dependent decapping of nuclear-transcribed mRNA
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2346Gcaud2346Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 31089..31523 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1.stop1Gcaud2346.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 31089..31091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1.CDS1Gcaud2346.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 31089..31523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1.exon1Gcaud2346.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 31089..31523 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1.start1Gcaud2346.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 31521..31523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1Gcaud2346.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 31089..31523 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=145bp
MDDFASFKSASQTSPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQK
ELRLGESMKQVSEREIRKAMAEAREKASPEVRKAIIEWPIPEEF*
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spliced messenger RNA

>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:31089..31523- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATTTTGCATCTTTCAAGTCTGCGTCGCAGACATCTCCTTCGGG
CTTGGATGCATTCAAGCTCCCGGGAGCTGCAAGTTTATATGAGCAGCTAG
ATAAACTGGTGCTTGTCTGCCTAAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGGTCTTTTGATCAATACGCAAATCTAATTCTCGATAACACTGTCGA
GCGTCTCTCGGTTGAAAACCTGTACGCAGATATTCCAATGGGAATATTTG
TCATCCGAGGGGAAAATGTTATGCTTCTTGGTGAGGTAGATGAACAAAAA
GAATTAAGACTCGGAGAGTCAATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGCGGAAGCGAGAGAGAAAGCATCTCCAGAAGTAAGAAAAG
CGATAATTGAATGGCCTATACCAGAAGAGTTTTGA
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protein sequence of Gcaud2346.t1

>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MDDFASFKSASQTSPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQK
ELRLGESMKQVSEREIRKAMAEAREKASPEVRKAIIEWPIPEEF*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:31089..31523-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:31089..31523- (Gracilaria caudata M_176_S67 male)
ATGGACGATTTTGCATCTTTCAAGTCTGCGTCGCAGACATCTCCTTCGGG
CTTGGATGCATTCAAGCTCCCGGGAGCTGCAAGTTTATATGAGCAGCTAG
ATAAACTGGTGCTTGTCTGCCTAAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGGTCTTTTGATCAATACGCAAATCTAATTCTCGATAACACTGTCGA
GCGTCTCTCGGTTGAAAACCTGTACGCAGATATTCCAATGGGAATATTTG
TCATCCGAGGGGAAAATGTTATGCTTCTTGGTGAGGTAGATGAACAAAAA
GAATTAAGACTCGGAGAGTCAATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGCGGAAGCGAGAGAGAAAGCATCTCCAGAAGTAAGAAAAG
CGATAATTGAATGGCCTATACCAGAAGAGTTTTGA
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:31089..31523-

>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=435bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:31089..31523- (Gracilaria caudata M_176_S67 male)
ATGGACGATTTTGCATCTTTCAAGTCTGCGTCGCAGACATCTCCTTCGGG
CTTGGATGCATTCAAGCTCCCGGGAGCTGCAAGTTTATATGAGCAGCTAG
ATAAACTGGTGCTTGTCTGCCTAAGGGACGGAAGAAACTTTTTTGGTTGG
CTGAGGTCTTTTGATCAATACGCAAATCTAATTCTCGATAACACTGTCGA
GCGTCTCTCGGTTGAAAACCTGTACGCAGATATTCCAATGGGAATATTTG
TCATCCGAGGGGAAAATGTTATGCTTCTTGGTGAGGTAGATGAACAAAAA
GAATTAAGACTCGGAGAGTCAATGAAGCAGGTTTCAGAACGAGAGATCCG
AAAGGCAATGGCGGAAGCGAGAGAGAAAGCATCTCCAGAAGTAAGAAAAG
CGATAATTGAATGGCCTATACCAGAAGAGTTTTGA
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