Gcaud2346.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2346.t1
Unique NameGcaud2346.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Homology
BLAST of Gcaud2346.t1 vs. uniprot
Match: R7QB24_CHOCR (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB24_CHOCR)

HSP 1 Score: 199 bits (506), Expect = 2.130e-62
Identity = 99/133 (74.44%), Postives = 115/133 (86.47%), Query Frame = 0
Query:   12 QTSPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREIRKAMAEAREKASPEVRKAIIEWPIPEEF 144
            +T+ SG  A KLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERL+VE+ YAD+P+GIFVIRGENVMLLGEVDE++EL +G SMKQV+E EIR+A+A  +E  +   R   +EWPIPEE+
Sbjct:   81 ETTQSGSGAIKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLTVEDSYADVPIGIFVIRGENVMLLGEVDEERELNVGSSMKQVTEPEIRRALAAIKEDRAARRRGEKVEWPIPEEY 213          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A507E1X1_9FUNG (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E1X1_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 1.690e-30
Identity = 57/104 (54.81%), Postives = 78/104 (75.00%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREIRKAMAEAREK 126
            LPG+ASL + +DK +LV LRD R   GWLRS+DQ+ANL+L +TVER  V + Y D+  GIFVIRGENV+LLGE+D++KE  L +S+K V   E+R+A  + +E+
Sbjct:    5 LPGSASLVDCVDKKILVILRDSRKLIGWLRSYDQFANLVLQDTVERTYVGDQYGDVYRGIFVIRGENVVLLGEIDKEKETALMKSLKNVPVAEVREAQKQEQER 108          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A1Z5L2V0_ORNMO (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L2V0_ORNMO)

HSP 1 Score: 113 bits (282), Expect = 8.830e-30
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0
Query:   14 SPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKE 101
            S + +  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y DIP GIF++RGENV+LLGE+DE++E
Sbjct:    2 SQNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDEERE 89          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A293MTH1_ORNER (U6 snRNA-associated Sm-like protein LSm1 (Fragment) n=3 Tax=Ornithodoros TaxID=6937 RepID=A0A293MTH1_ORNER)

HSP 1 Score: 113 bits (283), Expect = 1.530e-29
Identity = 62/127 (48.82%), Postives = 89/127 (70.08%), Query Frame = 0
Query:   14 SPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREI---RKAMAEAREKASPEVRKAIIE 137
            S + +  F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y DIP GIF++RGENV+LLGE+D++KE  +  ++++VS +EI   ++  AEA+++   +  KA  E
Sbjct:    2 SHNNMTLFYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVGKQYGDIPRGIFIVRGENVVLLGEIDQEKERLV--NLEEVSVQEILEVQRLEAEAKQERERQRAKAFKE 126          
BLAST of Gcaud2346.t1 vs. uniprot
Match: UPI00142558C8 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142558C8)

HSP 1 Score: 112 bits (281), Expect = 2.820e-29
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREIRKAMAEAREK 126
            LPG ASL E+LDK +LV LRDGR   G LRS DQ+ANL+L  T+ER+ V N Y DIP G+FVIRGENV+LLGE+D +K+ ++   +K+VS  EI +A  E + K
Sbjct:    7 LPGTASLIEELDKKLLVLLRDGRTLIGTLRSIDQFANLVLHKTIERIHVGNKYGDIPRGVFVIRGENVVLLGEIDSEKDPKV--ELKEVSIDEILEAQREEQVK 108          
BLAST of Gcaud2346.t1 vs. uniprot
Match: UPI000C75A328 (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75A328)

HSP 1 Score: 112 bits (280), Expect = 3.880e-29
Identity = 53/94 (56.38%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREI 116
            LPG A+L E+LDK ++V LRDGR   G+LRS DQ+ANL++ N +ER+ V++ Y DIP+G+FV+RGENV+LLGE++E++EL+    +KQVS +EI
Sbjct:    6 LPGTATLLEELDKKLMVLLRDGRTLIGYLRSVDQFANLVIHNCIERIHVKDEYGDIPLGVFVVRGENVVLLGEIEEKEELK--GKLKQVSLKEI 97          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A7S3GS20_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GS20_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.630e-29
Identity = 54/103 (52.43%), Postives = 79/103 (76.70%), Query Frame = 0
Query:   19 DAFKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREIRKAMA 121
            ++  LPGAASL EQ+D  +L+ LRDGRN  G LRSFDQY NLIL++T ER+  ++ Y DIP+G+F++RG+N++LLGEVDE KE    +++++VS  E+ + +A
Sbjct:    6 ESLYLPGAASLAEQIDTKILIVLRDGRNLVGILRSFDQYVNLILEDTYERVIFQDKYCDIPLGLFLVRGDNLILLGEVDEDKEA--SQNLEKVSPAELTELLA 106          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A6P7UPI0_IXOSC (U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=Ixodes TaxID=6944 RepID=A0A6P7UPI0_IXOSC)

HSP 1 Score: 111 bits (278), Expect = 7.560e-29
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKE 101
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y DIP GIFV+RG+NV+LLGE+DE KE
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHKTIERIHVRKQYGDIPRGIFVVRGDNVVLLGEIDEAKE 84          
BLAST of Gcaud2346.t1 vs. uniprot
Match: L7M3M9_RHIPC (U6 snRNA-associated Sm-like protein LSm1 n=13 Tax=Ixodidae TaxID=6939 RepID=L7M3M9_RHIPC)

HSP 1 Score: 111 bits (278), Expect = 7.560e-29
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 0
Query:   21 FKLPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKE 101
            F LPG ASL E+LDK +LV LRDGR   G+LRS DQ+ANL+L  T+ER+ V   Y DIP GIFVIRG+NV+LLGE+DE KE
Sbjct:    4 FYLPGTASLLEELDKKLLVFLRDGRTLIGYLRSIDQFANLVLHQTIERIHVGRQYGDIPRGIFVIRGDNVVLLGEIDEDKE 84          
BLAST of Gcaud2346.t1 vs. uniprot
Match: A0A7R8D4X3_LEPSM (U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8D4X3_LEPSM)

HSP 1 Score: 111 bits (277), Expect = 1.170e-28
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 0
Query:   23 LPGAASLYEQLDKLVLVCLRDGRNFFGWLRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQKELRLGESMKQVSEREIRKA 119
            LPG AS+ E+LDK ++V LRDGR   G LRS DQYANL+L   +ER+ V N Y DIP GIFV+RGENV+LLGE+DE +E      +++VS  EI +A
Sbjct:    6 LPGTASIMEELDKKLMVLLRDGRTLIGILRSVDQYANLVLHRAIERIHVGNDYGDIPRGIFVVRGENVVLLGEIDEVRESEANSKLREVSLEEILEA 102          
The following BLAST results are available for this feature:
BLAST of Gcaud2346.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QB24_CHOCR2.130e-6274.44U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=C... [more]
A0A507E1X1_9FUNG1.690e-3054.81U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
A0A1Z5L2V0_ORNMO8.830e-3059.09U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
A0A293MTH1_ORNER1.530e-2948.82U6 snRNA-associated Sm-like protein LSm1 (Fragment... [more]
UPI00142558C82.820e-2956.73U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
UPI000C75A3283.880e-2956.38U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A7S3GS20_9STRA4.630e-2952.43U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=S... [more]
A0A6P7UPI0_IXOSC7.560e-2964.20U6 snRNA-associated Sm-like protein LSm1 n=4 Tax=I... [more]
L7M3M9_RHIPC7.560e-2965.43U6 snRNA-associated Sm-like protein LSm1 n=13 Tax=... [more]
A0A7R8D4X3_LEPSM1.170e-2856.70U6 snRNA-associated Sm-like protein LSm1 n=3 Tax=L... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..95
e-value: 6.5E-15
score: 65.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 29..94
e-value: 1.7E-15
score: 56.4
NoneNo IPR availableGENE3D2.30.30.100coord: 26..136
e-value: 1.8E-30
score: 107.2
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 22..127
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 22..127
IPR034104Sm-like protein Lsm1CDDcd01728LSm1coord: 23..96
e-value: 3.78051E-39
score: 124.936
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 29..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:31089..31523 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2346.t1Gcaud2346.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 31089..31523 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2346.t1 ID=Gcaud2346.t1|Name=Gcaud2346.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MDDFASFKSASQTSPSGLDAFKLPGAASLYEQLDKLVLVCLRDGRNFFGW
LRSFDQYANLILDNTVERLSVENLYADIPMGIFVIRGENVMLLGEVDEQK
ELRLGESMKQVSEREIRKAMAEAREKASPEVRKAIIEWPIPEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034104Lsm1
IPR010920LSM_dom_sf